RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 A0A1B0GUV1 79 aa13.5□□□□□ -0.25
PCF11-203ENST00000530304 H0YGX0 51 aa13.5□□□□□ -0.25
PCF11-203ENST00000530304 SDIM1Q6ZPB5 146 aa13.5□□□□□ -0.25
PCF11-203ENST00000530304 LINC00643Q86TS7 51 aa13.5□□□□□ -0.25
PCF11-203ENST00000530304 SS18Q15532 418 aa13.49□□□□□ -0.25
PCF11-203ENST00000530304 IMUPQ9GZP8 106 aa13.49□□□□□ -0.25
PCF11-203ENST00000530304 A0A096LPF7 62 aa13.48□□□□□ -0.25
PCF11-203ENST00000530304 ATP5G1P05496 136 aa13.48□□□□□ -0.25
PCF11-203ENST00000530304 KRTAP10-3P60369 221 aa13.48□□□□□ -0.25
PCF11-203ENST00000530304 CLPSL2Q6UWE3 100 aa13.48□□□□□ -0.25
PCF11-203ENST00000530304 OR13C6PQ8NH95 151 aa13.48□□□□□ -0.25
PCF11-203ENST00000530304 X6R8D5 127 aa13.48□□□□□ -0.25
PCF11-203ENST00000530304 GAGE2AQ6NT46 116 aa13.48□□□□□ -0.25
PCF11-203ENST00000530304 FN1P02751 2386 aaKnown RBP13.48□□□□□ -0.25
PCF11-203ENST00000530304 PRO0255Q9UI72 69 aa13.47□□□□□ -0.25
PCF11-203ENST00000530304 C9orf129Q5T035 196 aaKnown RBP13.46□□□□□ -0.25
PCF11-203ENST00000530304 Q8IZM0 81 aa13.46□□□□□ -0.25
PCF11-203ENST00000530304 LECT2O14960 151 aa13.45□□□□□ -0.26
PCF11-203ENST00000530304 LINC00482Q8N8I6 264 aa13.45□□□□□ -0.26
PCF11-203ENST00000530304 FAM236AA0A1B0GUQ0 79 aa13.44□□□□□ -0.26
PCF11-203ENST00000530304 FAM236BA0A1B0GV22 79 aa13.44□□□□□ -0.26
PCF11-203ENST00000530304 LY6G6DO95868 133 aa13.43□□□□□ -0.26
PCF11-203ENST00000530304 ITPR2Q14571 2701 aa13.43□□□□□ -0.26
PCF11-203ENST00000530304 SMIM9A6NGZ8 99 aa13.43□□□□□ -0.26
PCF11-203ENST00000530304 NBEAL2Q6ZNJ1 2754 aa13.42□□□□□ -0.26
PCF11-203ENST00000530304 GCN1Q92616 2671 aaKnown RBP13.42□□□□□ -0.26
PCF11-203ENST00000530304 C14orf132Q9NPU4 83 aa13.42□□□□□ -0.26
PCF11-203ENST00000530304 SMR3AQ99954 134 aa13.41□□□□□ -0.26
PCF11-203ENST00000530304 LINC00269Q8N2A0 174 aa13.41□□□□□ -0.26
PCF11-203ENST00000530304 LINC01561Q8N1V8 128 aa13.4□□□□□ -0.26
PCF11-203ENST00000530304 OBSCN-AS1Q96MR7 158 aa13.4□□□□□ -0.26
PCF11-203ENST00000530304 SLPIP03973 132 aa13.4□□□□□ -0.26
PCF11-203ENST00000530304 PRR3P79522 188 aaKnown RBP13.39□□□□□ -0.27
PCF11-203ENST00000530304 DEFB4AO15263 64 aa13.38□□□□□ -0.27
PCF11-203ENST00000530304 LYRM9A8MSI8 78 aa13.37□□□□□ -0.27
PCF11-203ENST00000530304 KIAA0087Q14695 138 aa13.37□□□□□ -0.27
PCF11-203ENST00000530304 CD164L2Q6UWJ8 174 aa13.37□□□□□ -0.27
PCF11-203ENST00000530304 SPATA3Q8NHX4 192 aa13.37□□□□□ -0.27
PCF11-203ENST00000530304 CXCL5P42830 114 aa13.37□□□□□ -0.27
PCF11-203ENST00000530304 Q8N3U1 123 aa13.37□□□□□ -0.27
PCF11-203ENST00000530304 KLK5Q9Y337 293 aaPredicted RBP13.37□□□□□ -0.27
PCF11-203ENST00000530304 NCR3O14931 201 aa13.36□□□□□ -0.27
PCF11-203ENST00000530304 IGLV10-54A0A075B6I4 117 aa13.36□□□□□ -0.27
PCF11-203ENST00000530304 CHCHD10Q8WYQ3 142 aaPredicted RBP13.36□□□□□ -0.27
PCF11-203ENST00000530304 NANOS2P60321 138 aaKnown RBP13.35□□□□□ -0.27
PCF11-203ENST00000530304 ANGP03950 147 aaKnown RBP13.35□□□□□ -0.27
PCF11-203ENST00000530304 DEFB135Q30KP9 77 aa13.35□□□□□ -0.27
PCF11-203ENST00000530304 SMIM20Q8N5G0 67 aa13.35□□□□□ -0.27
PCF11-203ENST00000530304 ORMDL1Q9P0S3 153 aa13.35□□□□□ -0.27
PCF11-203ENST00000530304 CFAP161Q6P656 301 aa13.34□□□□□ -0.27
PCF11-203ENST00000530304 REG3AQ06141 175 aa13.34□□□□□ -0.27
PCF11-203ENST00000530304 COX17Q14061 63 aa13.34□□□□□ -0.27
PCF11-203ENST00000530304 HIVEP2P31629 2446 aa13.33□□□□□ -0.28
PCF11-203ENST00000530304 VWFP04275 2813 aa13.32□□□□□ -0.28
PCF11-203ENST00000530304 NDUFC2O95298 119 aa13.32□□□□□ -0.28
PCF11-203ENST00000530304 C9orf116Q5BN46 136 aaPredicted RBP13.32□□□□□ -0.28
PCF11-203ENST00000530304 LINC00846Q9NV44 126 aa13.32□□□□□ -0.28
PCF11-203ENST00000530304 IGHV4-28A0A0C4DH34 117 aa13.31□□□□□ -0.28
PCF11-203ENST00000530304 C3orf56Q8N813 242 aa13.31□□□□□ -0.28
PCF11-203ENST00000530304 C9orf66Q5T8R8 295 aa13.3□□□□□ -0.28
PCF11-203ENST00000530304 LINC00167Q96N53 147 aa13.3□□□□□ -0.28
PCF11-203ENST00000530304 DAD1P61803 113 aa13.29□□□□□ -0.28
PCF11-203ENST00000530304 Q8N814 137 aa13.29□□□□□ -0.28
PCF11-203ENST00000530304 TMEM126AQ9H061 195 aa13.29□□□□□ -0.28
PCF11-203ENST00000530304 A0A1B0GX51 115 aa13.28□□□□□ -0.28
PCF11-203ENST00000530304 UNC79Q9P2D8 2635 aa13.27□□□□□ -0.29
PCF11-203ENST00000530304 Q8NDZ9 215 aa13.26□□□□□ -0.29
PCF11-203ENST00000530304 CELA1Q9UNI1 258 aa13.26□□□□□ -0.29
PCF11-203ENST00000530304 APOC4P55056 127 aa13.26□□□□□ -0.29
PCF11-203ENST00000530304 C3orf22Q8N5N4 141 aa13.26□□□□□ -0.29
PCF11-203ENST00000530304 IGKV3D-7A0A0C4DH55 119 aa13.25□□□□□ -0.29
PCF11-203ENST00000530304 J3QKU1 62 aa13.25□□□□□ -0.29
PCF11-203ENST00000530304 HIST1H4AP62805 103 aaKnown RBP13.25□□□□□ -0.29
PCF11-203ENST00000530304 Q6JHZ5 121 aa13.24□□□□□ -0.29
PCF11-203ENST00000530304 TMEM256-PLSCR3K7ERE1 68 aa13.24□□□□□ -0.29
PCF11-203ENST00000530304 CCKP06307 115 aa13.24□□□□□ -0.29
PCF11-203ENST00000530304 UQCRQO14949 82 aa13.23□□□□□ -0.29
PCF11-203ENST00000530304 C6orf223Q8N319 242 aa13.23□□□□□ -0.29
PCF11-203ENST00000530304 Q8NAQ8 132 aa13.23□□□□□ -0.29
PCF11-203ENST00000530304 C6orf99Q4VX62 202 aa13.23□□□□□ -0.29
PCF11-203ENST00000530304 C10orf25Q5T742 122 aa13.23□□□□□ -0.29
PCF11-203ENST00000530304 JMJD7-PLA2G4BH0Y9G9 81 aa13.22□□□□□ -0.29
PCF11-203ENST00000530304 UNQ6190/PRO20217Q6UXQ8 127 aa13.22□□□□□ -0.29
PCF11-203ENST00000530304 FASNP49327 2511 aaKnown RBP13.22□□□□□ -0.29
PCF11-203ENST00000530304 C9orf153Q5TBE3 101 aa13.22□□□□□ -0.29
PCF11-203ENST00000530304 HELZ2Q9BYK8 2649 aaKnown RBP13.21□□□□□ -0.3
PCF11-203ENST00000530304 HTN3P15516 51 aa13.21□□□□□ -0.3
PCF11-203ENST00000530304 S100A7L2Q5SY68 101 aa13.21□□□□□ -0.3
PCF11-203ENST00000530304 LINC00526Q96FQ7 95 aa13.21□□□□□ -0.3
PCF11-203ENST00000530304 MIFP14174 115 aa13.2□□□□□ -0.3
PCF11-203ENST00000530304 SPAG11BQ08648 103 aa13.2□□□□□ -0.3
PCF11-203ENST00000530304 LELP1Q5T871 98 aa13.2□□□□□ -0.3
PCF11-203ENST00000530304 ATOX1O00244 68 aa13.19□□□□□ -0.3
PCF11-203ENST00000530304 SPART-AS1P0CW21 52 aa13.18□□□□□ -0.3
PCF11-203ENST00000530304 COX7CP15954 63 aa13.18□□□□□ -0.3
PCF11-203ENST00000530304 C2orf48Q96LS8 159 aa13.18□□□□□ -0.3
PCF11-203ENST00000530304 CYSRT1A8MQ03 144 aa13.17□□□□□ -0.3
PCF11-203ENST00000530304 KLK12Q9UKR0 248 aa13.17□□□□□ -0.3
PCF11-203ENST00000530304 A0A087WVE0 104 aa13.17□□□□□ -0.3
PCF11-203ENST00000530304 RPL18AQ02543 176 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms