RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MAP1LC3AQ9H492 121 aa13.85□□□□□ -0.19
CPSF1-202ENST00000527827 LAMTOR2Q9Y2Q5 125 aa13.85□□□□□ -0.19
CPSF1-202ENST00000527827 RPL28P46779 137 aaKnown RBP13.84□□□□□ -0.19
CPSF1-202ENST00000527827 IGIPA6NJ69 53 aa13.83□□□□□ -0.2
CPSF1-202ENST00000527827 BCE1O60756 84 aa13.83□□□□□ -0.2
CPSF1-202ENST00000527827 LCE2AQ5TA79 106 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-202ENST00000527827 NPSP0C0P6 89 aa13.82□□□□□ -0.2
CPSF1-202ENST00000527827 CRYGAP11844 174 aa13.82□□□□□ -0.2
CPSF1-202ENST00000527827 TYMSOSQ8TAI1 123 aa13.82□□□□□ -0.2
CPSF1-202ENST00000527827 CDKN2A-AS1Q9UH64 79 aa13.82□□□□□ -0.2
CPSF1-202ENST00000527827 FAT4Q6V0I7 4981 aa13.82□□□□□ -0.2
CPSF1-202ENST00000527827 F8VRH5 84 aa13.81□□□□□ -0.2
CPSF1-202ENST00000527827 ORMDL2Q53FV1 153 aa13.8□□□□□ -0.2
CPSF1-202ENST00000527827 HERVK_113P63121 156 aa13.79□□□□□ -0.2
CPSF1-202ENST00000527827 LINC00167Q96N53 147 aa13.79□□□□□ -0.2
CPSF1-202ENST00000527827 ANAPC11Q9NYG5 84 aa13.79□□□□□ -0.2
CPSF1-202ENST00000527827 RPL37AP8A6NKH3 93 aa13.77□□□□□ -0.21
CPSF1-202ENST00000527827 SEC11AP67812 179 aa13.76□□□□□ -0.21
CPSF1-202ENST00000527827 KRTAP13-2Q52LG2 175 aa13.76□□□□□ -0.21
CPSF1-202ENST00000527827 K7EMI3 77 aa13.75□□□□□ -0.21
CPSF1-202ENST00000527827 CXCL5P42830 114 aa13.75□□□□□ -0.21
CPSF1-202ENST00000527827 GEMIN7Q9H840 131 aaKnown RBP13.75□□□□□ -0.21
CPSF1-202ENST00000527827 KRTAP13-1Q8IUC0 172 aa13.74□□□□□ -0.21
CPSF1-202ENST00000527827 RETNLBQ9BQ08 111 aa13.73□□□□□ -0.21
CPSF1-202ENST00000527827 GAGE10A6NGK3 116 aa13.72□□□□□ -0.21
CPSF1-202ENST00000527827 PAPPA-AS1Q5QFB9 102 aa13.72□□□□□ -0.21
CPSF1-202ENST00000527827 TIMM17AQ99595 171 aa13.72□□□□□ -0.21
CPSF1-202ENST00000527827 NXT2Q9NPJ8 142 aaKnown RBP13.72□□□□□ -0.21
CPSF1-202ENST00000527827 SMIM1B2RUZ4 78 aa13.71□□□□□ -0.21
CPSF1-202ENST00000527827 IGLV5-37A0A075B6J1 123 aa13.7□□□□□ -0.22
CPSF1-202ENST00000527827 TOMM6Q96B49 74 aa13.7□□□□□ -0.22
CPSF1-202ENST00000527827 COX7B2Q8TF08 81 aa13.69□□□□□ -0.22
CPSF1-202ENST00000527827 PDZD11Q5EBL8 140 aa13.68□□□□□ -0.22
CPSF1-202ENST00000527827 MUC17Q685J3 4493 aa13.68□□□□□ -0.22
CPSF1-202ENST00000527827 UBE2AP49459 152 aa13.67□□□□□ -0.22
CPSF1-202ENST00000527827 FAM229BQ4G0N7 80 aa13.67□□□□□ -0.22
CPSF1-202ENST00000527827 LINC00304Q8N9R0 145 aa13.67□□□□□ -0.22
CPSF1-202ENST00000527827 ANAPC16Q96DE5 110 aa13.67□□□□□ -0.22
CPSF1-202ENST00000527827 G0S2P27469 103 aa13.66□□□□□ -0.22
CPSF1-202ENST00000527827 PNRC1Q12796 327 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-202ENST00000527827 IGLV5-45A0A087WSX0 123 aa13.65□□□□□ -0.22
CPSF1-202ENST00000527827 MT-ND4LP03901 98 aa13.65□□□□□ -0.22
CPSF1-202ENST00000527827 ERASQ7Z444 233 aa13.65□□□□□ -0.22
CPSF1-202ENST00000527827 A0A1B0GVG6 124 aa13.64□□□□□ -0.23
CPSF1-202ENST00000527827 TINCRA0A1B0GVN0 87 aa13.64□□□□□ -0.23
CPSF1-202ENST00000527827 RAB5BP61020 215 aa13.64□□□□□ -0.23
CPSF1-202ENST00000527827 TPRXLQ17RH7 258 aa13.64□□□□□ -0.23
CPSF1-202ENST00000527827 NKAPP1Q8N9T2 125 aa13.64□□□□□ -0.23
CPSF1-202ENST00000527827 SCO1O75880 301 aa13.63□□□□□ -0.23
CPSF1-202ENST00000527827 ADCYAP1P18509 176 aa13.63□□□□□ -0.23
CPSF1-202ENST00000527827 SCGB3A1Q96QR1 104 aa13.63□□□□□ -0.23
CPSF1-202ENST00000527827 CDIP1Q9H305 208 aa13.62□□□□□ -0.23
CPSF1-202ENST00000527827 IGKV2-28A0A075B6P5 120 aa13.61□□□□□ -0.23
CPSF1-202ENST00000527827 IGKV2D-28P01615 120 aa13.61□□□□□ -0.23
CPSF1-202ENST00000527827 SPINK8P0C7L1 97 aa13.6□□□□□ -0.23
CPSF1-202ENST00000527827 KIAA1644Q3SXP7 199 aa13.6□□□□□ -0.23
CPSF1-202ENST00000527827 IGLV7-46A0A075B6I9 117 aa13.59□□□□□ -0.23
CPSF1-202ENST00000527827 KRTAP9-6A0A140TA67 174 aa13.59□□□□□ -0.23
CPSF1-202ENST00000527827 IGKV2D-26A0A0A0MRZ7 120 aa13.58□□□□□ -0.24
CPSF1-202ENST00000527827 PRLHP81277 87 aa13.58□□□□□ -0.24
CPSF1-202ENST00000527827 CST9LQ9H4G1 147 aa13.58□□□□□ -0.24
CPSF1-202ENST00000527827 CTAG1AP78358 180 aa13.55□□□□□ -0.24
CPSF1-202ENST00000527827 TMEM126AQ9H061 195 aa13.54□□□□□ -0.24
CPSF1-202ENST00000527827 TMEM238C9JI98 176 aa13.53□□□□□ -0.24
CPSF1-202ENST00000527827 ATP5LO75964 103 aa13.53□□□□□ -0.24
CPSF1-202ENST00000527827 VPREB1P12018 145 aa13.53□□□□□ -0.24
CPSF1-202ENST00000527827 FAM19A1Q7Z5A9 133 aa13.53□□□□□ -0.24
CPSF1-202ENST00000527827 LINC01546A6NGU7 62 aa13.52□□□□□ -0.25
CPSF1-202ENST00000527827 PFN2P35080 140 aa13.52□□□□□ -0.25
CPSF1-202ENST00000527827 MRPL18Q9H0U6 180 aaKnown RBP13.52□□□□□ -0.25
CPSF1-202ENST00000527827 PMVKQ15126 192 aa13.51□□□□□ -0.25
CPSF1-202ENST00000527827 C3orf22Q8N5N4 141 aa13.51□□□□□ -0.25
CPSF1-202ENST00000527827 LINC01549A6NIU2 74 aa13.5□□□□□ -0.25
CPSF1-202ENST00000527827 PLEKHB2Q96CS7 222 aa13.5□□□□□ -0.25
CPSF1-202ENST00000527827 PPDPFQ9H3Y8 114 aa13.5□□□□□ -0.25
CPSF1-202ENST00000527827 M0R378 163 aa13.49□□□□□ -0.25
CPSF1-202ENST00000527827 SND1-IT1Q9HBX3 110 aa13.49□□□□□ -0.25
CPSF1-202ENST00000527827 IGLV5-39A0A0G2JS06 123 aa13.48□□□□□ -0.25
CPSF1-202ENST00000527827 H3BRM9 83 aa13.48□□□□□ -0.25
CPSF1-202ENST00000527827 Q8NDZ9 215 aa13.47□□□□□ -0.25
CPSF1-202ENST00000527827 CBLN2Q8IUK8 224 aa13.45□□□□□ -0.26
CPSF1-202ENST00000527827 ERG28Q9UKR5 140 aa13.45□□□□□ -0.26
CPSF1-202ENST00000527827 IGLC3P0DOY3 106 aa13.44□□□□□ -0.26
CPSF1-202ENST00000527827 RPL24P83731 157 aaKnown RBP13.44□□□□□ -0.26
CPSF1-202ENST00000527827 TRAV9-1A0A075B6T8 112 aa13.42□□□□□ -0.26
CPSF1-202ENST00000527827 RAB14P61106 215 aa13.42□□□□□ -0.26
CPSF1-202ENST00000527827 GNB1LQ9BYB4 327 aa13.42□□□□□ -0.26
CPSF1-202ENST00000527827 ZNF22P17026 224 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-202ENST00000527827 COX17Q14061 63 aa13.41□□□□□ -0.26
CPSF1-202ENST00000527827 SPAG11AQ6PDA7 123 aa13.41□□□□□ -0.26
CPSF1-202ENST00000527827 ZNF625Q96I27 306 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-202ENST00000527827 HIGD2AQ9BW72 106 aa13.41□□□□□ -0.26
CPSF1-202ENST00000527827 FA2HQ7L5A8 372 aa13.4□□□□□ -0.26
CPSF1-202ENST00000527827 SPRR4Q96PI1 79 aa13.39□□□□□ -0.27
CPSF1-202ENST00000527827 FP248Q71RG6 208 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-202ENST00000527827 SMCO4Q9NRQ5 59 aa13.37□□□□□ -0.27
CPSF1-202ENST00000527827 A0A096LNJ9 63 aa13.36□□□□□ -0.27
CPSF1-202ENST00000527827 NDUFA6P56556 154 aa13.36□□□□□ -0.27
CPSF1-202ENST00000527827 KRTAP13-3Q3SY46 172 aa13.35□□□□□ -0.27
CPSF1-202ENST00000527827 ASB16-AS1Q495Z4 193 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms