RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 IGHV3-16A0A0C4DH30 117 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 IGHV3-23P01764 117 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 CCL4P13236 92 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 C1orf64Q8NEQ6 169 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 CCL17Q92583 94 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 LIMD2Q9BT23 127 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 OCR1Q9BZK8 76 aa4.06□□□□□ -1.76
CD44-225ENST00000527326 COL6A6A6NMZ7 2263 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 FREM2Q5SZK8 3169 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 LOC100131303A0A0U1RQF7 123 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 LCE6AA0A183 80 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 TRBV6-4A0A1B0GX49 114 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 K7EQG2 157 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 PSCAO43653 123 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 Q5VV11 94 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 IGFL3Q6UXB1 125 aa4.05□□□□□ -1.76
CD44-225ENST00000527326 MALRD1Q5VYJ5 2156 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 POLEQ07864 2286 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 IGHV3-66A0A0C4DH42 116 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 A8MUN3 132 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 C16orf90A8MZG2 172 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 LY6HO94772 140 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 PLA2G2AP14555 144 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 RNASE13Q5GAN3 156 aaKnown RBP4.04□□□□□ -1.76
CD44-225ENST00000527326 LINC00242Q5T6M2 205 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 NTM-AS1Q6ZSK4 140 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 Q6ZTI0 123 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 CNEP1R1Q8N9A8 125 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 NKAPP1Q8N9T2 125 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 ASXL3Q9C0F0 2248 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 PIEZO2Q9H5I5 2752 aa4.04□□□□□ -1.76
CD44-225ENST00000527326 SVILO95425 2214 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 DOCK10Q96BY6 2186 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 APC2O95996 2303 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 HCG22E2RYF7 251 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 CHKB-CPT1BH3BT56 60 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 PRB1P04280 392 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 CCL18P55774 89 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 LINC00158P58513 81 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 ELOF1P60002 83 aaKnown RBP4.03□□□□□ -1.76
CD44-225ENST00000527326 DEFB114Q30KQ6 69 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 Q75L30 129 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 PRR26Q8N8Z3 221 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 SPATA3Q8NHX4 192 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 COX7B2Q8TF08 81 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 LINC00467Q9BRT7 94 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 HIGD2AQ9BW72 106 aa4.03□□□□□ -1.76
CD44-225ENST00000527326 CFAP46Q8IYW2 2715 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 ARFGEF3Q5TH69 2177 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.02□□□□□ -1.77
CD44-225ENST00000527326 IGHV3OR16-12A0A075B7B8 117 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 IGHV3OR16-8A0A075B7F1 116 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 K7EQD1 137 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 NDUFB1O75438 58 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 COX6A2Q02221 97 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 LYPD2Q6UXB3 125 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 ZNF843Q8N446 348 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 DEFB119Q8N690 84 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 SPTSSBQ8NFR3 76 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 DPM3Q9P2X0 92 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 PTPN13Q12923 2485 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 LAMA1P25391 3075 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 ANKRD17O75179 2603 aaKnown RBP4.02□□□□□ -1.77
CD44-225ENST00000527326 TEX15Q9BXT5 2789 aa4.02□□□□□ -1.77
CD44-225ENST00000527326 ZGRF1Q86YA3 2104 aa4.01□□□□□ -1.77
CD44-225ENST00000527326 KALRNO60229 2985 aa4.01□□□□□ -1.77
CD44-225ENST00000527326 IGHV7-81A0A0B4J1V7 117 aa4.01□□□□□ -1.77
CD44-225ENST00000527326 IGHV3-35A0A0C4DH35 117 aa4.01□□□□□ -1.77
CD44-225ENST00000527326 IGHV4-31P0DP07 118 aa4.01□□□□□ -1.77
CD44-225ENST00000527326 COX7A1P24310 79 aa4.01□□□□□ -1.77
CD44-225ENST00000527326 ZCCHC13Q8WW36 166 aaKnown RBP4.01□□□□□ -1.77
CD44-225ENST00000527326 CDC42SE1Q9NRR8 79 aa4.01□□□□□ -1.77
CD44-225ENST00000527326 PTPRQQ9UMZ3 2332 aa4□□□□□ -1.77
CD44-225ENST00000527326 IGHV3OR16-13A0A075B7E8 117 aa4□□□□□ -1.77
CD44-225ENST00000527326 IGHV3-74A0A0B4J1X5 117 aa4□□□□□ -1.77
CD44-225ENST00000527326 LY6G6EA0A0G2JKS1 128 aa4□□□□□ -1.77
CD44-225ENST00000527326 ODF3BA8MYP8 253 aa4□□□□□ -1.77
CD44-225ENST00000527326 NDUFA4O00483 81 aa4□□□□□ -1.77
CD44-225ENST00000527326 IGKV4-1P06312 121 aa4□□□□□ -1.77
CD44-225ENST00000527326 IGHV4-38-2P0DP08 117 aa4□□□□□ -1.77
CD44-225ENST00000527326 MINOS1Q5TGZ0 78 aa4□□□□□ -1.77
CD44-225ENST00000527326 U3KQA8 63 aa4□□□□□ -1.77
CD44-225ENST00000527326 COL12A1Q99715 3063 aa4□□□□□ -1.77
CD44-225ENST00000527326 SPTA1P02549 2419 aa4□□□□□ -1.77
CD44-225ENST00000527326 ARHGAP32A7KAX9 2087 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 MUC4Q99102 2169 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 ABCA12Q86UK0 2595 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 IGHV3-49A0A0A0MS15 119 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 LOC101927531A0A1B0GV80 90 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 LRCOL1A6NCL2 159 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 SERTAD4-AS1Q5TG53 156 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 LINC00575Q6W349 94 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 MUC7Q8TAX7 377 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 Q9BRP9 147 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 RELNP78509 3460 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 DOPEY1Q5JWR5 2465 aa3.99□□□□□ -1.77
CD44-225ENST00000527326 A6NED7 52 aa3.98□□□□□ -1.77
CD44-225ENST00000527326 ASB16-AS1Q495Z4 193 aa3.98□□□□□ -1.77
CD44-225ENST00000527326 Q8N9P0 234 aaPredicted RBP3.98□□□□□ -1.77
CD44-225ENST00000527326 PRR15LQ9BU68 103 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms