RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 LYPD5Q6UWN5 251 aa7.53□□□□□ -1.2
LIMCH1-205ENST00000503057 CCDC179H3BU77 68 aa7.52□□□□□ -1.2
LIMCH1-205ENST00000503057 LOC107984640A0A0U1RRK4 108 aa7.52□□□□□ -1.21
LIMCH1-205ENST00000503057 NOTCH2Q04721 2471 aa7.52□□□□□ -1.21
LIMCH1-205ENST00000503057 FAM19A1Q7Z5A9 133 aa7.52□□□□□ -1.21
LIMCH1-205ENST00000503057 TRBV10-3A0A0K0K1G6 114 aa7.52□□□□□ -1.21
LIMCH1-205ENST00000503057 COX7CP15954 63 aa7.51□□□□□ -1.21
LIMCH1-205ENST00000503057 Q6ZTC4 211 aa7.51□□□□□ -1.21
LIMCH1-205ENST00000503057 HIGD2AQ9BW72 106 aa7.51□□□□□ -1.21
LIMCH1-205ENST00000503057 LITAFQ99732 161 aa7.51□□□□□ -1.21
LIMCH1-205ENST00000503057 C6orf223Q8N319 242 aa7.5□□□□□ -1.21
LIMCH1-205ENST00000503057 SCXQ7RTU7 201 aa7.5□□□□□ -1.21
LIMCH1-205ENST00000503057 C2orf48Q96LS8 159 aa7.5□□□□□ -1.21
LIMCH1-205ENST00000503057 X6R8D5 127 aa7.5□□□□□ -1.21
LIMCH1-205ENST00000503057 FAM19A3Q7Z5A8 133 aa7.5□□□□□ -1.21
LIMCH1-205ENST00000503057 C20orf197Q8N268 126 aa7.5□□□□□ -1.21
LIMCH1-205ENST00000503057 PRRC2CQ9Y520 2896 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-205ENST00000503057 CELA1Q9UNI1 258 aa7.49□□□□□ -1.21
LIMCH1-205ENST00000503057 SPTBN4Q9H254 2564 aa7.49□□□□□ -1.21
LIMCH1-205ENST00000503057 SONP18583 2426 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-205ENST00000503057 SOSTDC1Q6X4U4 206 aa7.49□□□□□ -1.21
LIMCH1-205ENST00000503057 MYO9AB2RTY4 2548 aa7.49□□□□□ -1.21
LIMCH1-205ENST00000503057 NDUFC2-KCTD14E9PQ53 114 aa7.48□□□□□ -1.21
LIMCH1-205ENST00000503057 CHD8Q9HCK8 2581 aa7.48□□□□□ -1.21
LIMCH1-205ENST00000503057 LINC00575Q6W349 94 aa7.48□□□□□ -1.21
LIMCH1-205ENST00000503057 WFDC9Q8NEX5 89 aa7.48□□□□□ -1.21
LIMCH1-205ENST00000503057 WFDC10BQ8IUB3 73 aa7.48□□□□□ -1.21
LIMCH1-205ENST00000503057 ZNF575Q86XF7 245 aa7.47□□□□□ -1.21
LIMCH1-205ENST00000503057 DOPEY1Q5JWR5 2465 aa7.47□□□□□ -1.21
LIMCH1-205ENST00000503057 FAM236DA0A1B0GTK5 79 aa7.47□□□□□ -1.21
LIMCH1-205ENST00000503057 FAM236CP0DP71 79 aa7.47□□□□□ -1.21
LIMCH1-205ENST00000503057 TRBV7-7A0A0K0K1E9 115 aa7.47□□□□□ -1.21
LIMCH1-205ENST00000503057 RPL37AP8A6NKH3 93 aa7.47□□□□□ -1.21
LIMCH1-205ENST00000503057 CDH23Q9H251 3354 aa7.46□□□□□ -1.21
LIMCH1-205ENST00000503057 C3orf84H3BNL1 204 aa7.46□□□□□ -1.21
LIMCH1-205ENST00000503057 C2CD3Q4AC94 2353 aa7.46□□□□□ -1.22
LIMCH1-205ENST00000503057 PPDPFQ9H3Y8 114 aa7.46□□□□□ -1.22
LIMCH1-205ENST00000503057 NDUFC1O43677 76 aa7.45□□□□□ -1.22
LIMCH1-205ENST00000503057 USP9XQ93008 2570 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-205ENST00000503057 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-205ENST00000503057 MYO18BQ8IUG5 2567 aa7.45□□□□□ -1.22
LIMCH1-205ENST00000503057 A0A0C4DFX4 3053 aa7.45□□□□□ -1.22
LIMCH1-205ENST00000503057 H0Y9J4 135 aa7.44□□□□□ -1.22
LIMCH1-205ENST00000503057 ANKRD17O75179 2603 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-205ENST00000503057 H3BNG1 76 aa7.44□□□□□ -1.22
LIMCH1-205ENST00000503057 ATP5EP56381 51 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-205ENST00000503057 CSNK1G2-AS1Q8NCQ2 148 aa7.44□□□□□ -1.22
LIMCH1-205ENST00000503057 LAMA2P24043 3122 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-205ENST00000503057 FAM218AQ96MZ4 157 aa7.43□□□□□ -1.22
LIMCH1-205ENST00000503057 ZNF462Q96JM2 2506 aa7.43□□□□□ -1.22
LIMCH1-205ENST00000503057 MUC4Q99102 2169 aa7.43□□□□□ -1.22
LIMCH1-205ENST00000503057 UNC80Q8N2C7 3258 aa7.42□□□□□ -1.22
LIMCH1-205ENST00000503057 PRB2P02812 416 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-205ENST00000503057 Q6ZRU5 148 aa7.42□□□□□ -1.22
LIMCH1-205ENST00000503057 LINC00846Q9NV44 126 aa7.42□□□□□ -1.22
LIMCH1-205ENST00000503057 USP9YO00507 2555 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-205ENST00000503057 LINC00474Q9P2X8 69 aa7.41□□□□□ -1.22
LIMCH1-205ENST00000503057 PKD1L2Q7Z442 2459 aa7.41□□□□□ -1.22
LIMCH1-205ENST00000503057 A0A087WVE0 104 aa7.41□□□□□ -1.22
LIMCH1-205ENST00000503057 PRYO14603 147 aa7.41□□□□□ -1.22
LIMCH1-205ENST00000503057 Q8NAQ8 132 aa7.41□□□□□ -1.22
LIMCH1-205ENST00000503057 LINC01556Q5JQF7 62 aa7.4□□□□□ -1.22
LIMCH1-205ENST00000503057 REG3GQ6UW15 175 aa7.4□□□□□ -1.22
LIMCH1-205ENST00000503057 TRAV7A0A075B6U4 112 aa7.4□□□□□ -1.23
LIMCH1-205ENST00000503057 CHKB-CPT1BH3BT56 60 aa7.38□□□□□ -1.23
LIMCH1-205ENST00000503057 C6orf48Q9UBA6 75 aa7.38□□□□□ -1.23
LIMCH1-205ENST00000503057 PLAC8L1A1L4L8 177 aa7.38□□□□□ -1.23
LIMCH1-205ENST00000503057 GIG44P09565 113 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-205ENST00000503057 C4orf48Q5BLP8 95 aa7.38□□□□□ -1.23
LIMCH1-205ENST00000503057 C1orf137Q5JT78 98 aa7.38□□□□□ -1.23
LIMCH1-205ENST00000503057 ZNF706Q9Y5V0 76 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-205ENST00000503057 ABCA12Q86UK0 2595 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 TRBV7-6A0A0J9YX20 115 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 KRTAP1-3Q8IUG1 177 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 C19orf73Q9NVV2 129 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 ABCA2Q9BZC7 2435 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 ESRGQ1W209 222 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 MRPL55Q7Z7F7 128 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 TLN2Q9Y4G6 2542 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 NUPR2A6NF83 97 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 SNURFQ9Y675 71 aa7.37□□□□□ -1.23
LIMCH1-205ENST00000503057 C5orf47Q569G3 176 aa7.36□□□□□ -1.23
LIMCH1-205ENST00000503057 A0A096LNI7 61 aa7.36□□□□□ -1.23
LIMCH1-205ENST00000503057 Q6ZVQ6 151 aa7.36□□□□□ -1.23
LIMCH1-205ENST00000503057 C10orf25Q5T742 122 aa7.36□□□□□ -1.23
LIMCH1-205ENST00000503057 Q8N3U1 123 aa7.35□□□□□ -1.23
LIMCH1-205ENST00000503057 SVIPQ8NHG7 77 aa7.35□□□□□ -1.23
LIMCH1-205ENST00000503057 GVQW2A0A096LPI5 108 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-205ENST00000503057 CXCL6P80162 114 aa7.34□□□□□ -1.23
LIMCH1-205ENST00000503057 LINC00612Q8N6U2 182 aa7.34□□□□□ -1.23
LIMCH1-205ENST00000503057 LINC01547P58512 204 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-205ENST00000503057 ELOF1P60002 83 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-205ENST00000503057 IGKV4-1P06312 121 aa7.33□□□□□ -1.24
LIMCH1-205ENST00000503057 EIF4EBP3O60516 100 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-205ENST00000503057 PRUNE2Q8WUY3 3088 aa7.32□□□□□ -1.24
LIMCH1-205ENST00000503057 M0R2N4 97 aa7.32□□□□□ -1.24
LIMCH1-205ENST00000503057 LRRK2Q5S007 2527 aa7.31□□□□□ -1.24
LIMCH1-205ENST00000503057 LOC110117498A0A087WWA1 95 aa7.31□□□□□ -1.24
LIMCH1-205ENST00000503057 POLQO75417 2590 aa7.31□□□□□ -1.24
LIMCH1-205ENST00000503057 C7orf33Q8WU49 177 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms