RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SMIM13P0DJ93 91 aa5.71□□□□□ -1.5
SF3A1-210ENST00000498259 ZNF625Q96I27 306 aaPredicted RBP5.71□□□□□ -1.5
SF3A1-210ENST00000498259 SPAG11BQ08648 103 aa5.7□□□□□ -1.5
SF3A1-210ENST00000498259 WWC2-AS2Q96NR7 200 aa5.7□□□□□ -1.5
SF3A1-210ENST00000498259 LINC00158P58513 81 aa5.69□□□□□ -1.5
SF3A1-210ENST00000498259 Q8N3U1 123 aa5.69□□□□□ -1.5
SF3A1-210ENST00000498259 TENM3Q9P273 2699 aa5.68□□□□□ -1.5
SF3A1-210ENST00000498259 C14orf177Q52M58 125 aa5.68□□□□□ -1.5
SF3A1-210ENST00000498259 RAB37Q96AX2 223 aa5.68□□□□□ -1.5
SF3A1-210ENST00000498259 C2orf48Q96LS8 159 aa5.68□□□□□ -1.5
SF3A1-210ENST00000498259 Q9HAA7 133 aa5.68□□□□□ -1.5
SF3A1-210ENST00000498259 ERG28Q9UKR5 140 aa5.68□□□□□ -1.5
SF3A1-210ENST00000498259 TRBV30A0A0K0K1B3 111 aa5.67□□□□□ -1.5
SF3A1-210ENST00000498259 EREGO14944 169 aa5.67□□□□□ -1.5
SF3A1-210ENST00000498259 PSCAO43653 123 aa5.67□□□□□ -1.5
SF3A1-210ENST00000498259 LYRM7Q5U5X0 104 aa5.67□□□□□ -1.5
SF3A1-210ENST00000498259 NHP2Q9NX24 153 aaKnown RBP5.67□□□□□ -1.5
SF3A1-210ENST00000498259 GVQW2A0A096LPI5 108 aaPredicted RBP5.66□□□□□ -1.5
SF3A1-210ENST00000498259 C3orf84H3BNL1 204 aa5.66□□□□□ -1.5
SF3A1-210ENST00000498259 MUSTN1Q8IVN3 82 aa5.66□□□□□ -1.5
SF3A1-210ENST00000498259 CAMK2N2Q96S95 79 aa5.66□□□□□ -1.5
SF3A1-210ENST00000498259 PKIGQ9Y2B9 76 aa5.66□□□□□ -1.5
SF3A1-210ENST00000498259 A0A0B4J2C4 111 aa5.65□□□□□ -1.5
SF3A1-210ENST00000498259 PFN2P35080 140 aa5.65□□□□□ -1.5
SF3A1-210ENST00000498259 FXYD2P54710 66 aa5.65□□□□□ -1.5
SF3A1-210ENST00000498259 KIAA0087Q14695 138 aa5.65□□□□□ -1.5
SF3A1-210ENST00000498259 LINC00308Q8TCZ7 52 aa5.65□□□□□ -1.5
SF3A1-210ENST00000498259 NTN5Q8WTR8 489 aaPredicted RBP5.65□□□□□ -1.5
SF3A1-210ENST00000498259 LITAFQ99732 161 aa5.65□□□□□ -1.5
SF3A1-210ENST00000498259 PRO1854Q9UHT4 67 aa5.65□□□□□ -1.5
SF3A1-210ENST00000498259 MEGF8Q7Z7M0 2845 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 TRAV13-2A0A0B4J235 113 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 NBDYA0A0U1RRE5 68 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 A0A1B0GWB2 263 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 A4D1N5 150 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 C9orf118A6NHY6 69 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 RNF151Q2KHN1 245 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 ADAMTSL4-AS1Q5T5F5 129 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 KRTAP26-1Q6PEX3 210 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 MIR7-3HGQ8N6C7 128 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 COL7A1Q02388 2944 aa5.64□□□□□ -1.51
SF3A1-210ENST00000498259 A0A0U1RRA0 63 aa5.63□□□□□ -1.51
SF3A1-210ENST00000498259 COX6CP09669 75 aa5.63□□□□□ -1.51
SF3A1-210ENST00000498259 FABP2P12104 132 aa5.63□□□□□ -1.51
SF3A1-210ENST00000498259 SYCNQ0VAF6 134 aa5.63□□□□□ -1.51
SF3A1-210ENST00000498259 C2orf82Q6UX34 121 aa5.63□□□□□ -1.51
SF3A1-210ENST00000498259 CBY1Q9Y3M2 126 aa5.63□□□□□ -1.51
SF3A1-210ENST00000498259 HUWE1Q7Z6Z7 4374 aaKnown RBP5.63□□□□□ -1.51
SF3A1-210ENST00000498259 NDUFC2O95298 119 aa5.62□□□□□ -1.51
SF3A1-210ENST00000498259 CFC1BP0CG36 223 aa5.62□□□□□ -1.51
SF3A1-210ENST00000498259 CFC1P0CG37 223 aa5.62□□□□□ -1.51
SF3A1-210ENST00000498259 UNQ6190/PRO20217Q6UXQ8 127 aa5.62□□□□□ -1.51
SF3A1-210ENST00000498259 GTF2H5Q6ZYL4 71 aa5.62□□□□□ -1.51
SF3A1-210ENST00000498259 SND1-IT1Q9HBX3 110 aa5.62□□□□□ -1.51
SF3A1-210ENST00000498259 STAB2Q8WWQ8 2551 aa5.62□□□□□ -1.51
SF3A1-210ENST00000498259 LOC107984156A0A0G2JMH3 177 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 USP17L23D6RBM5 183 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 TAX1BP3O14907 124 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 VAMP3Q15836 100 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 Q1RN00 199 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 HIGD2BQ4VC39 106 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 ARL17AQ8IVW1 177 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 DAND5Q8N907 189 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 C15orf56Q8N910 161 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 CARD19Q96LW7 228 aa5.61□□□□□ -1.51
SF3A1-210ENST00000498259 NDUFC2-KCTD14E9PQ53 114 aa5.6□□□□□ -1.51
SF3A1-210ENST00000498259 H3BUT2 72 aa5.6□□□□□ -1.51
SF3A1-210ENST00000498259 PSMB2P49721 201 aa5.6□□□□□ -1.51
SF3A1-210ENST00000498259 NPC2P61916 151 aa5.6□□□□□ -1.51
SF3A1-210ENST00000498259 PGPEP1Q9NXJ5 209 aa5.6□□□□□ -1.51
SF3A1-210ENST00000498259 DNHD1Q96M86 4753 aa5.59□□□□□ -1.51
SF3A1-210ENST00000498259 TRBV20-1A0A075B6N2 111 aa5.59□□□□□ -1.51
SF3A1-210ENST00000498259 SCGB1C2P0DMR2 95 aa5.59□□□□□ -1.51
SF3A1-210ENST00000498259 CASC10Q5T4H9 136 aa5.59□□□□□ -1.51
SF3A1-210ENST00000498259 C6orf223Q8N319 242 aa5.59□□□□□ -1.51
SF3A1-210ENST00000498259 DNAH9Q9NYC9 4486 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 A0A1B0GV90 55 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 A0A1W2PPM0 123 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 GAGE10A6NGK3 116 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 K7ERJ3 54 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 SNCGO76070 127 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 LY6G6CO95867 125 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 TLX1NBP0CAT3 122 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 Q6ZRU5 148 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 TMEM126AQ9H061 195 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 C6orf48Q9UBA6 75 aa5.58□□□□□ -1.52
SF3A1-210ENST00000498259 TRBV10-2A0A0K0K1G8 114 aa5.57□□□□□ -1.52
SF3A1-210ENST00000498259 CNBPP62633 177 aaKnown RBP5.57□□□□□ -1.52
SF3A1-210ENST00000498259 C10orf25Q5T742 122 aa5.57□□□□□ -1.52
SF3A1-210ENST00000498259 LINC00526Q96FQ7 95 aa5.57□□□□□ -1.52
SF3A1-210ENST00000498259 LOC107984640A0A0U1RRK4 108 aa5.56□□□□□ -1.52
SF3A1-210ENST00000498259 RPL13AP40429 203 aaKnown RBP5.56□□□□□ -1.52
SF3A1-210ENST00000498259 S100A7L2Q5SY68 101 aa5.56□□□□□ -1.52
SF3A1-210ENST00000498259 C1orf134Q5TEV5 83 aa5.56□□□□□ -1.52
SF3A1-210ENST00000498259 OR13C6PQ8NH95 151 aa5.56□□□□□ -1.52
SF3A1-210ENST00000498259 SPCS1Q9Y6A9 102 aa5.56□□□□□ -1.52
SF3A1-210ENST00000498259 H7C2G1 150 aa5.55□□□□□ -1.52
SF3A1-210ENST00000498259 LCE2BO14633 110 aa5.55□□□□□ -1.52
SF3A1-210ENST00000498259 TSPAN13O95857 204 aa5.55□□□□□ -1.52
SF3A1-210ENST00000498259 UBE2V1Q13404 147 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms