RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 NACAE9PAV3 2078 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 CELSR2Q9HCU4 2923 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 IGHV6-1A0A0B4J1U7 121 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 IGLV2-8P01709 118 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 ZNF702PQ9H963 129 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 PRO0461Q9UI25 63 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 IGHV1-3A0A0C4DH29 117 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 NREPQ16612 68 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 DIRC1Q969H9 104 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 SMIM2Q9BVW6 85 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 ARHGAP21Q5T5U3 1957 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 IGLV5-52A0A0A0MRZ9 124 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 IGLV3-32A0A0A0MS00 114 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 RSPO1Q2MKA7 263 aaPredicted RBP3.73□□□□□ -1.81
USP54-216ENST00000498143 FGF23Q9GZV9 251 aaPredicted RBP3.73□□□□□ -1.81
USP54-216ENST00000498143 IGLV3-9A0A075B6K5 115 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 KRTAP17-1Q9BYP8 105 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 EML6Q6ZMW3 1958 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 A0A096LNT2 108 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 LY6LH3BQJ8 138 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 C9orf47Q6ZRZ4 202 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 WFDC10AQ9H1F0 79 aa3.73□□□□□ -1.81
USP54-216ENST00000498143 FAM223BA6NKX1 122 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 NDPQ00604 133 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 GPHB5Q86YW7 130 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 IGHV4-4A0A075B6R2 117 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 IGKV2-40A0A087WW87 121 aaPredicted RBP3.72□□□□□ -1.81
USP54-216ENST00000498143 IGKV2D-40P01614 121 aaPredicted RBP3.72□□□□□ -1.81
USP54-216ENST00000498143 PRR4Q16378 134 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 Q5VSD8 79 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 KRTAP16-1A8MUX0 517 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 TMEM14BQ9NUH8 114 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 OTOGQ6ZRI0 2925 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 TENM1Q9UKZ4 2725 aa3.72□□□□□ -1.81
USP54-216ENST00000498143 SRRM2Q9UQ35 2752 aaKnown RBP3.72□□□□□ -1.81
USP54-216ENST00000498143 IGHV3-73A0A0B4J1V6 119 aa3.71□□□□□ -1.81
USP54-216ENST00000498143 C19orf71A6NCJ1 209 aa3.71□□□□□ -1.81
USP54-216ENST00000498143 A6NDX4 124 aa3.71□□□□□ -1.81
USP54-216ENST00000498143 GNRH2O43555 120 aa3.71□□□□□ -1.81
USP54-216ENST00000498143 MUC3AQ02505 3323 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 H7C423 109 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 IGLV3-1P01715 115 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 LINC00158P58513 81 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 EIF4EBP1Q13541 118 aaPredicted RBP3.71□□□□□ -1.82
USP54-216ENST00000498143 ARTNQ5T4W7 220 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 URB1-AS1Q96HZ7 61 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 LINC00474Q9P2X8 69 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 IGKV3-20P01619 116 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 TMEM14CQ9P0S9 112 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 TRGV2A0A075B6R0 118 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 A0A087WVE0 104 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 Q8N1X5 172 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 KIAA1549Q9HCM3 1950 aa3.71□□□□□ -1.82
USP54-216ENST00000498143 UBE2D1P51668 147 aa3.7□□□□□ -1.82
USP54-216ENST00000498143 RPL36AP83881 106 aaKnown RBP3.7□□□□□ -1.82
USP54-216ENST00000498143 FHL2Q14192 279 aa3.7□□□□□ -1.82
USP54-216ENST00000498143 C7orf33Q8WU49 177 aa3.7□□□□□ -1.82
USP54-216ENST00000498143 RPL36ALQ969Q0 106 aaKnown RBP3.7□□□□□ -1.82
USP54-216ENST00000498143 MRPL36Q9P0J6 103 aaKnown RBP3.7□□□□□ -1.82
USP54-216ENST00000498143 SDHAF1A6NFY7 115 aa3.7□□□□□ -1.82
USP54-216ENST00000498143 C14orf178Q8N769 122 aaPredicted RBP3.7□□□□□ -1.82
USP54-216ENST00000498143 Q8TAT8 98 aa3.7□□□□□ -1.82
USP54-216ENST00000498143 FBN1P35555 2871 aaKnown RBP3.7□□□□□ -1.82
USP54-216ENST00000498143 IGHV3-35A0A0C4DH35 117 aa3.7□□□□□ -1.82
USP54-216ENST00000498143 TRBV6-8A0A0A6YYG3 113 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 A0A0J9YXY3 114 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 C15orf32Q32M92 178 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 FAM167A-AS1Q96KT0 104 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 IGKV3D-20A0A0C4DH25 116 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 A0A0J9YY99 117 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 KLKP1Q107X0 134 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 MIAQ16674 131 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 Q8N9W7 124 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 TMEM167AQ8TBQ9 72 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 USMG5Q96IX5 58 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 SPEGQ15772 3267 aa3.69□□□□□ -1.82
USP54-216ENST00000498143 BPY2O14599 106 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 RNASE3P12724 160 aaKnown RBP3.68□□□□□ -1.82
USP54-216ENST00000498143 EXPH5Q8NEV8 1989 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 IGLV9-49A0A0B4J1Y8 123 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 KRTAP10-3P60369 221 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 TOMM7Q9P0U1 55 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 C11orf86A6NJI1 115 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 SPINT4Q6UDR6 99 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 LINC00208Q96KT6 92 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 IGHV3-49A0A0A0MS15 119 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 IGHV7-81A0A0B4J1V7 117 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 TRBV6-1A0A0K0K1D8 114 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 ERC2-IT1O76042 136 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 RPL28P46779 137 aaKnown RBP3.68□□□□□ -1.82
USP54-216ENST00000498143 C10orf55Q5SWW7 151 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 REG3GQ6UW15 175 aa3.68□□□□□ -1.82
USP54-216ENST00000498143 CELSR3Q9NYQ7 3312 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 DCHS2Q6V1P9 2916 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 IGHV4OR15-8A0A075B7B6 117 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 A0A087WW49 117 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 I3L3M4 83 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 TSPEAR-AS2P59090 65 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 PDZD2O15018 2839 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 CLPSP04118 112 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms