RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 SS18Q15532 418 aa3.1□□□□□ -1.91
PTCD3-219ENST00000494323 C9orf116Q5BN46 136 aaPredicted RBP3.1□□□□□ -1.91
PTCD3-219ENST00000494323 SVBPQ8N300 66 aa3.1□□□□□ -1.91
PTCD3-219ENST00000494323 TMEM101Q96IK0 257 aa3.1□□□□□ -1.91
PTCD3-219ENST00000494323 BTF3L4Q96K17 158 aa3.1□□□□□ -1.91
PTCD3-219ENST00000494323 SEC11CQ9BY50 192 aa3.1□□□□□ -1.91
PTCD3-219ENST00000494323 TRBV20OR9-2A0A075B6H5 130 aa3.09□□□□□ -1.91
PTCD3-219ENST00000494323 I3L3M4 83 aa3.09□□□□□ -1.91
PTCD3-219ENST00000494323 NCR2O95944 276 aa3.09□□□□□ -1.91
PTCD3-219ENST00000494323 KRTAP11-1Q8IUC1 163 aa3.09□□□□□ -1.91
PTCD3-219ENST00000494323 ZNF664Q8N3J9 261 aa3.09□□□□□ -1.91
PTCD3-219ENST00000494323 NUP35Q8NFH5 326 aa3.09□□□□□ -1.91
PTCD3-219ENST00000494323 HIST1H4GQ99525 98 aa3.09□□□□□ -1.91
PTCD3-219ENST00000494323 EIF5A2Q9GZV4 153 aaKnown RBP3.09□□□□□ -1.91
PTCD3-219ENST00000494323 RNASE7Q9H1E1 156 aaKnown RBP3.09□□□□□ -1.91
PTCD3-219ENST00000494323 CDC42SE2Q9NRR3 84 aa3.09□□□□□ -1.91
PTCD3-219ENST00000494323 TMEM218A2RU14 115 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 F8W036 122 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 TMEM250H0YL14 139 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.08□□□□□ -1.92
PTCD3-219ENST00000494323 IGLV7-43P04211 117 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 ESDP10768 282 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 ZNF25P17030 456 aaPredicted RBP3.08□□□□□ -1.92
PTCD3-219ENST00000494323 CTRLP40313 264 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 MEF2BQ02080 365 aaPredicted RBP3.08□□□□□ -1.92
PTCD3-219ENST00000494323 RPL18AQ02543 176 aaKnown RBP3.08□□□□□ -1.92
PTCD3-219ENST00000494323 RNASE13Q5GAN3 156 aaKnown RBP3.08□□□□□ -1.92
PTCD3-219ENST00000494323 SMIM15Q7Z3B0 74 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 C5orf38Q86SI9 138 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 ISOC2Q96AB3 205 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 CAMK2N2Q96S95 79 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 CNFNQ9BYD5 112 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 ST20Q9HBF5 79 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 TMEM242Q9NWH2 141 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 PKIGQ9Y2B9 76 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 CARHSP1Q9Y2V2 147 aaKnown RBP3.08□□□□□ -1.92
PTCD3-219ENST00000494323 MUC2Q02817 5179 aa3.08□□□□□ -1.92
PTCD3-219ENST00000494323 TRAV13-1A0A0B4J241 112 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 C1orf196B1AJZ1 125 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 KRTAP4-16G5E9R7 235 aaPredicted RBP3.07□□□□□ -1.92
PTCD3-219ENST00000494323 K7EN84 100 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 COX7A2LO14548 114 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 PDE6DO43924 150 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 APOMO95445 188 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 TSPAN13O95857 204 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 APOC3P02656 99 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 RHEBQ15382 184 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 C10orf91Q5T1B1 145 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 DIRC1Q969H9 104 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 SMIM12Q96EX1 92 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 MRAP2Q96G30 205 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 RPP21Q9H633 154 aaKnown RBP3.07□□□□□ -1.92
PTCD3-219ENST00000494323 BIN3Q9NQY0 253 aa3.07□□□□□ -1.92
PTCD3-219ENST00000494323 A0A0J9YXY3 114 aa3.06□□□□□ -1.92
PTCD3-219ENST00000494323 TRBV6-5A0A0K0K1A5 114 aa3.06□□□□□ -1.92
PTCD3-219ENST00000494323 H0Y9J4 135 aa3.06□□□□□ -1.92
PTCD3-219ENST00000494323 SMKR1H3BMG3 65 aa3.06□□□□□ -1.92
PTCD3-219ENST00000494323 GATCO43716 136 aaKnown RBP3.06□□□□□ -1.92
PTCD3-219ENST00000494323 KRTAP1-4P0C5Y4 121 aa3.06□□□□□ -1.92
PTCD3-219ENST00000494323 POLR2KP53803 58 aaKnown RBP3.06□□□□□ -1.92
PTCD3-219ENST00000494323 Q6ZN92 141 aa3.06□□□□□ -1.92
PTCD3-219ENST00000494323 MRPL52Q86TS9 123 aaKnown RBP3.06□□□□□ -1.92
PTCD3-219ENST00000494323 TRBV27A0A0K0K1C4 114 aa3.05□□□□□ -1.92
PTCD3-219ENST00000494323 C7orf77A4D0Y5 90 aa3.05□□□□□ -1.92
PTCD3-219ENST00000494323 A8MU10 97 aa3.05□□□□□ -1.92
PTCD3-219ENST00000494323 SRP19P09132 144 aaKnown RBP3.05□□□□□ -1.92
PTCD3-219ENST00000494323 RAB4AP20338 218 aa3.05□□□□□ -1.92
PTCD3-219ENST00000494323 FCER1GP30273 86 aa3.05□□□□□ -1.92
PTCD3-219ENST00000494323 SPAG11BQ08648 103 aa3.05□□□□□ -1.92
PTCD3-219ENST00000494323 UNQ6190/PRO20217Q6UXQ8 127 aa3.05□□□□□ -1.92
PTCD3-219ENST00000494323 FAM19A5Q7Z5A7 132 aaPredicted RBP3.05□□□□□ -1.92
PTCD3-219ENST00000494323 IGLV1-50A0A075B6I6 118 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 ZNF727A8MUV8 499 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 A8MWL6 223 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 PPP1R2P9O14990 202 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 ADCYAP1P18509 176 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 UBE2D1P51668 147 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 CEBPGP53567 150 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 AMN1Q8IY45 258 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 IMMP2LQ96T52 175 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 SMIM7Q9BQ49 75 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 TMEM191AQ9H0A3 160 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 GEMIN7Q9H840 131 aaKnown RBP3.04□□□□□ -1.92
PTCD3-219ENST00000494323 SMCO4Q9NRQ5 59 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 NAT8Q9UHE5 227 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 UBE2D4Q9Y2X8 147 aa3.04□□□□□ -1.92
PTCD3-219ENST00000494323 A0A0U1RQV1 116 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 A0A1B0GUT8 65 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 HIGD1CA8MV81 97 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 NDUFA1O15239 70 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 MT-ND4LP03901 98 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 RPL39P62891 51 aaKnown RBP3.03□□□□□ -1.92
PTCD3-219ENST00000494323 UBE2BP63146 152 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 TMEM241Q24JQ0 296 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 Q6ZUT4 128 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 TSKUQ8WUA8 353 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 ORAOV1Q8WV07 137 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 FAM104AQ969W3 186 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 BORCS7Q96B45 105 aa3.03□□□□□ -1.92
PTCD3-219ENST00000494323 MRPL35Q9NZE8 188 aaKnown RBP3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms