RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 SEC11AP67812 179 aa8.21□□□□□ -1.1
COL6A3-211ENST00000491233 C6orf226Q5I0X4 101 aa8.21□□□□□ -1.1
COL6A3-211ENST00000491233 PAPPA-AS1Q5QFB9 102 aa8.21□□□□□ -1.1
COL6A3-211ENST00000491233 TIMM17AQ99595 171 aa8.21□□□□□ -1.1
COL6A3-211ENST00000491233 XAGE1AQ9HD64 81 aa8.21□□□□□ -1.1
COL6A3-211ENST00000491233 KIAA1644Q3SXP7 199 aa8.2□□□□□ -1.1
COL6A3-211ENST00000491233 GEMIN7Q9H840 131 aaKnown RBP8.2□□□□□ -1.1
COL6A3-211ENST00000491233 LCE2BO14633 110 aa8.19□□□□□ -1.1
COL6A3-211ENST00000491233 G0S2P27469 103 aa8.19□□□□□ -1.1
COL6A3-211ENST00000491233 TOMM6Q96B49 74 aa8.19□□□□□ -1.1
COL6A3-211ENST00000491233 F8VRH5 84 aa8.18□□□□□ -1.1
COL6A3-211ENST00000491233 ADCYAP1P18509 176 aa8.18□□□□□ -1.1
COL6A3-211ENST00000491233 C22orf24Q9Y442 160 aa8.18□□□□□ -1.1
COL6A3-211ENST00000491233 LPAP08519 4548 aa8.18□□□□□ -1.1
COL6A3-211ENST00000491233 NUPR1O60356 82 aa8.17□□□□□ -1.1
COL6A3-211ENST00000491233 CXCL5P42830 114 aa8.17□□□□□ -1.1
COL6A3-211ENST00000491233 CLLU1Q5K131 121 aa8.17□□□□□ -1.1
COL6A3-211ENST00000491233 SMIM1B2RUZ4 78 aa8.16□□□□□ -1.1
COL6A3-211ENST00000491233 ZNF861PO60384 105 aa8.16□□□□□ -1.1
COL6A3-211ENST00000491233 RPL13AP40429 203 aaKnown RBP8.16□□□□□ -1.1
COL6A3-211ENST00000491233 LBHQ53QV2 105 aaPredicted RBP8.16□□□□□ -1.1
COL6A3-211ENST00000491233 ERASQ7Z444 233 aa8.16□□□□□ -1.1
COL6A3-211ENST00000491233 SCGB3A1Q96QR1 104 aa8.16□□□□□ -1.1
COL6A3-211ENST00000491233 TRAV9-1A0A075B6T8 112 aa8.15□□□□□ -1.1
COL6A3-211ENST00000491233 MRPL55Q7Z7F7 128 aaKnown RBP8.14□□□□□ -1.11
COL6A3-211ENST00000491233 COX7B2Q8TF08 81 aa8.14□□□□□ -1.11
COL6A3-211ENST00000491233 TP73-AS1Q9UF72 201 aa8.14□□□□□ -1.11
COL6A3-211ENST00000491233 IGLV5-45A0A087WSX0 123 aa8.13□□□□□ -1.11
COL6A3-211ENST00000491233 TINCRA0A1B0GVN0 87 aa8.13□□□□□ -1.11
COL6A3-211ENST00000491233 PDZD11Q5EBL8 140 aa8.13□□□□□ -1.11
COL6A3-211ENST00000491233 CARHSP1Q9Y2V2 147 aaKnown RBP8.13□□□□□ -1.11
COL6A3-211ENST00000491233 TMEM218A2RU14 115 aa8.12□□□□□ -1.11
COL6A3-211ENST00000491233 SPINK8P0C7L1 97 aa8.12□□□□□ -1.11
COL6A3-211ENST00000491233 UQCC3Q6UW78 93 aa8.12□□□□□ -1.11
COL6A3-211ENST00000491233 LINC01546A6NGU7 62 aa8.11□□□□□ -1.11
COL6A3-211ENST00000491233 LINC01549A6NIU2 74 aa8.11□□□□□ -1.11
COL6A3-211ENST00000491233 BCE1O60756 84 aa8.11□□□□□ -1.11
COL6A3-211ENST00000491233 S100PP25815 95 aa8.11□□□□□ -1.11
COL6A3-211ENST00000491233 RPL37AP8A6NKH3 93 aa8.1□□□□□ -1.11
COL6A3-211ENST00000491233 RPL28P46779 137 aaKnown RBP8.1□□□□□ -1.11
COL6A3-211ENST00000491233 PRR4Q16378 134 aa8.1□□□□□ -1.11
COL6A3-211ENST00000491233 LINC00167Q96N53 147 aa8.1□□□□□ -1.11
COL6A3-211ENST00000491233 GNB1LQ9BYB4 327 aa8.1□□□□□ -1.11
COL6A3-211ENST00000491233 CST9LQ9H4G1 147 aa8.1□□□□□ -1.11
COL6A3-211ENST00000491233 GAGE10A6NGK3 116 aa8.09□□□□□ -1.11
COL6A3-211ENST00000491233 PMVKQ15126 192 aa8.09□□□□□ -1.11
COL6A3-211ENST00000491233 FA2HQ7L5A8 372 aa8.09□□□□□ -1.11
COL6A3-211ENST00000491233 SMCO4Q9NRQ5 59 aa8.09□□□□□ -1.11
COL6A3-211ENST00000491233 A0A087X002 238 aa8.08□□□□□ -1.12
COL6A3-211ENST00000491233 RAB5BP61020 215 aa8.08□□□□□ -1.12
COL6A3-211ENST00000491233 SEC11CQ9BY50 192 aa8.08□□□□□ -1.12
COL6A3-211ENST00000491233 MRPL18Q9H0U6 180 aaKnown RBP8.08□□□□□ -1.12
COL6A3-211ENST00000491233 IGLV5-37A0A075B6J1 123 aa8.07□□□□□ -1.12
COL6A3-211ENST00000491233 IFITM2Q01629 132 aa8.07□□□□□ -1.12
COL6A3-211ENST00000491233 COX19Q49B96 90 aa8.07□□□□□ -1.12
COL6A3-211ENST00000491233 H3BRM9 83 aa8.06□□□□□ -1.12
COL6A3-211ENST00000491233 ATP5LO75964 103 aa8.06□□□□□ -1.12
COL6A3-211ENST00000491233 TSPAN13O95857 204 aa8.06□□□□□ -1.12
COL6A3-211ENST00000491233 FABP9Q0Z7S8 132 aa8.06□□□□□ -1.12
COL6A3-211ENST00000491233 NKAPP1Q8N9T2 125 aa8.06□□□□□ -1.12
COL6A3-211ENST00000491233 IGLC3P0DOY3 106 aa8.05□□□□□ -1.12
COL6A3-211ENST00000491233 SCO1O75880 301 aa8.04□□□□□ -1.12
COL6A3-211ENST00000491233 CRYGAP11844 174 aa8.04□□□□□ -1.12
COL6A3-211ENST00000491233 UBE2AP49459 152 aa8.04□□□□□ -1.12
COL6A3-211ENST00000491233 COMMD7Q86VX2 200 aa8.04□□□□□ -1.12
COL6A3-211ENST00000491233 TYMSOSQ8TAI1 123 aa8.04□□□□□ -1.12
COL6A3-211ENST00000491233 A0A096LNJ9 63 aa8.03□□□□□ -1.12
COL6A3-211ENST00000491233 IGLV5-39A0A0G2JS06 123 aa8.03□□□□□ -1.12
COL6A3-211ENST00000491233 ZNF22P17026 224 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-211ENST00000491233 PFN2P35080 140 aa8.03□□□□□ -1.12
COL6A3-211ENST00000491233 NDUFA6P56556 154 aa8.03□□□□□ -1.12
COL6A3-211ENST00000491233 KRTAP13-1Q8IUC0 172 aa8.03□□□□□ -1.12
COL6A3-211ENST00000491233 IGKV2-28A0A075B6P5 120 aa8.02□□□□□ -1.13
COL6A3-211ENST00000491233 IGKV2D-28P01615 120 aa8.02□□□□□ -1.13
COL6A3-211ENST00000491233 RHEBQ15382 184 aa8.02□□□□□ -1.13
COL6A3-211ENST00000491233 URB1-AS1Q96HZ7 61 aa8.02□□□□□ -1.13
COL6A3-211ENST00000491233 RPS10P5Q9NQ39 176 aa8.02□□□□□ -1.13
COL6A3-211ENST00000491233 ANAPC11Q9NYG5 84 aa8.02□□□□□ -1.13
COL6A3-211ENST00000491233 HBDP02042 147 aa8.01□□□□□ -1.13
COL6A3-211ENST00000491233 C18orf32Q8TCD1 76 aa8.01□□□□□ -1.13
COL6A3-211ENST00000491233 ERG28Q9UKR5 140 aa8.01□□□□□ -1.13
COL6A3-211ENST00000491233 VPREB1P12018 145 aa8□□□□□ -1.13
COL6A3-211ENST00000491233 PRLHP81277 87 aa8□□□□□ -1.13
COL6A3-211ENST00000491233 KRTAP13-2Q52LG2 175 aa8□□□□□ -1.13
COL6A3-211ENST00000491233 C10orf91Q5T1B1 145 aa8□□□□□ -1.13
COL6A3-211ENST00000491233 SND1-IT1Q9HBX3 110 aa8□□□□□ -1.13
COL6A3-211ENST00000491233 PMCHL1Q16048 86 aa7.99□□□□□ -1.13
COL6A3-211ENST00000491233 ZNF625Q96I27 306 aaPredicted RBP7.99□□□□□ -1.13
COL6A3-211ENST00000491233 TRAPPC1Q9Y5R8 145 aa7.99□□□□□ -1.13
COL6A3-211ENST00000491233 C11orf86A6NJI1 115 aa7.98□□□□□ -1.13
COL6A3-211ENST00000491233 LINC00614P0C842 121 aa7.98□□□□□ -1.13
COL6A3-211ENST00000491233 FAM229BQ4G0N7 80 aa7.98□□□□□ -1.13
COL6A3-211ENST00000491233 C4orf48Q5BLP8 95 aa7.98□□□□□ -1.13
COL6A3-211ENST00000491233 FAM19A1Q7Z5A9 133 aa7.98□□□□□ -1.13
COL6A3-211ENST00000491233 TMEM126AQ9H061 195 aa7.98□□□□□ -1.13
COL6A3-211ENST00000491233 TMEM238C9JI98 176 aa7.97□□□□□ -1.13
COL6A3-211ENST00000491233 RPL24P83731 157 aaKnown RBP7.96□□□□□ -1.14
COL6A3-211ENST00000491233 COX17Q14061 63 aa7.96□□□□□ -1.14
COL6A3-211ENST00000491233 TMEM170BQ5T4T1 132 aa7.96□□□□□ -1.14
COL6A3-211ENST00000491233 BAGE3Q86Y29 109 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms