RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 A0A087WWC5 75 aa1.56□□□□□ -2.16
HMGB1P38-201ENST00000490557 TRBV6-1A0A0K0K1D8 114 aa1.56□□□□□ -2.16
HMGB1P38-201ENST00000490557 G3V318 75 aa1.56□□□□□ -2.16
HMGB1P38-201ENST00000490557 IFI27P40305 119 aaPredicted RBP1.56□□□□□ -2.16
HMGB1P38-201ENST00000490557 PLAC8Q9NZF1 115 aa1.56□□□□□ -2.16
HMGB1P38-201ENST00000490557 SCN11AQ9UI33 1791 aa1.56□□□□□ -2.16
HMGB1P38-201ENST00000490557 HFM1A2PYH4 1435 aa1.56□□□□□ -2.16
HMGB1P38-201ENST00000490557 PPRC1Q5VV67 1664 aaKnown RBP1.55□□□□□ -2.16
HMGB1P38-201ENST00000490557 MYO5CQ9NQX4 1742 aa1.55□□□□□ -2.16
HMGB1P38-201ENST00000490557 SPINK7P58062 85 aa1.55□□□□□ -2.16
HMGB1P38-201ENST00000490557 FXYD6P3P58550 94 aa1.55□□□□□ -2.16
HMGB1P38-201ENST00000490557 ATP7BP35670 1465 aa1.55□□□□□ -2.16
HMGB1P38-201ENST00000490557 C1orf167Q5SNV9 1468 aa1.55□□□□□ -2.16
HMGB1P38-201ENST00000490557 TRBV7-4A0A0J9YYF1 115 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 NKTRP30414 1462 aaKnown RBP1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 EFCAB5A4FU69 1503 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 SETBP1Q9Y6X0 1596 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 TMEM131LA2VDJ0 1609 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 MROH1Q8NDA8 1641 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 COL4A1P02462 1669 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 LRRC37A2A6NM11 1700 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 RGPD8O14715 1765 aaPredicted RBP1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 LTN1O94822 1766 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 RGPD5Q99666 1765 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 KNTC1P50748 2209 aa1.54□□□□□ -2.16
HMGB1P38-201ENST00000490557 H3BVH4 76 aa1.53□□□□□ -2.16
HMGB1P38-201ENST00000490557 NDUFB1O75438 58 aa1.53□□□□□ -2.16
HMGB1P38-201ENST00000490557 S100A3P33764 101 aa1.53□□□□□ -2.16
HMGB1P38-201ENST00000490557 URB2Q14146 1524 aaKnown RBP1.53□□□□□ -2.16
HMGB1P38-201ENST00000490557 FLG2Q5D862 2391 aaPredicted RBP1.53□□□□□ -2.16
HMGB1P38-201ENST00000490557 KNDC1Q76NI1 1749 aa1.53□□□□□ -2.16
HMGB1P38-201ENST00000490557 NUP188Q5SRE5 1749 aa1.52□□□□□ -2.17
HMGB1P38-201ENST00000490557 INO80Q9ULG1 1556 aaPredicted RBP1.52□□□□□ -2.17
HMGB1P38-201ENST00000490557 A0A1B0GU69 56 aa1.52□□□□□ -2.17
HMGB1P38-201ENST00000490557 LYNX1P0DP58 116 aa1.52□□□□□ -2.17
HMGB1P38-201ENST00000490557 COX8AP10176 69 aa1.52□□□□□ -2.17
HMGB1P38-201ENST00000490557 UBE2DNLQ8IWF7 75 aa1.52□□□□□ -2.17
HMGB1P38-201ENST00000490557 FBN3Q75N90 2809 aa1.52□□□□□ -2.17
HMGB1P38-201ENST00000490557 ZDBF2Q9HCK1 2354 aa1.51□□□□□ -2.17
HMGB1P38-201ENST00000490557 SSC5DA1L4H1 1573 aa1.51□□□□□ -2.17
HMGB1P38-201ENST00000490557 DEFB112Q30KQ8 113 aa1.51□□□□□ -2.17
HMGB1P38-201ENST00000490557 SSBP3-AS1Q7Z2R9 100 aa1.51□□□□□ -2.17
HMGB1P38-201ENST00000490557 KRTAP4-1Q9BYQ7 146 aa1.51□□□□□ -2.17
HMGB1P38-201ENST00000490557 GNG13Q9P2W3 67 aa1.51□□□□□ -2.17
HMGB1P38-201ENST00000490557 HILPDAQ9Y5L2 63 aa1.51□□□□□ -2.17
HMGB1P38-201ENST00000490557 RGPD2P0DJD1 1756 aa1.51□□□□□ -2.17
HMGB1P38-201ENST00000490557 ANGP03950 147 aaKnown RBP1.5□□□□□ -2.17
HMGB1P38-201ENST00000490557 MADDQ8WXG6 1647 aa1.5□□□□□ -2.17
HMGB1P38-201ENST00000490557 CRYBG1Q9Y4K1 1723 aa1.49□□□□□ -2.17
HMGB1P38-201ENST00000490557 SHPRHQ149N8 1683 aa1.49□□□□□ -2.17
HMGB1P38-201ENST00000490557 TRAV21A0A0B4J279 112 aa1.49□□□□□ -2.17
HMGB1P38-201ENST00000490557 K7EIL1 84 aa1.49□□□□□ -2.17
HMGB1P38-201ENST00000490557 WFDC9Q8NEX5 89 aa1.49□□□□□ -2.17
HMGB1P38-201ENST00000490557 ASXL3Q9C0F0 2248 aa1.49□□□□□ -2.17
HMGB1P38-201ENST00000490557 MAP2P11137 1827 aaKnown RBP1.49□□□□□ -2.17
HMGB1P38-201ENST00000490557 SAMD9Q5K651 1589 aa1.48□□□□□ -2.17
HMGB1P38-201ENST00000490557 HELZ2Q9BYK8 2649 aaKnown RBP1.48□□□□□ -2.17
HMGB1P38-201ENST00000490557 SFTA3P0C7M3 94 aa1.48□□□□□ -2.17
HMGB1P38-201ENST00000490557 GAFA1Q96PS6 74 aa1.48□□□□□ -2.17
HMGB1P38-201ENST00000490557 ASXL1Q8IXJ9 1541 aa1.48□□□□□ -2.17
HMGB1P38-201ENST00000490557 C5P01031 1676 aa1.48□□□□□ -2.17
HMGB1P38-201ENST00000490557 CACNA1CQ13936 2221 aa1.47□□□□□ -2.17
HMGB1P38-201ENST00000490557 IFI6P09912 130 aa1.47□□□□□ -2.17
HMGB1P38-201ENST00000490557 ATXN8Q156A1 80 aa1.47□□□□□ -2.17
HMGB1P38-201ENST00000490557 SMIM5Q71RC9 77 aa1.47□□□□□ -2.17
HMGB1P38-201ENST00000490557 ALKQ9UM73 1620 aa1.47□□□□□ -2.17
HMGB1P38-201ENST00000490557 KDM3BQ7LBC6 1761 aa1.47□□□□□ -2.17
HMGB1P38-201ENST00000490557 CNTRLQ7Z7A1 2325 aa1.46□□□□□ -2.18
HMGB1P38-201ENST00000490557 CADP27708 2225 aa1.46□□□□□ -2.18
HMGB1P38-201ENST00000490557 PIK3C2BO00750 1634 aa1.46□□□□□ -2.18
HMGB1P38-201ENST00000490557 TARBP1Q13395 1621 aaKnown RBP1.46□□□□□ -2.18
HMGB1P38-201ENST00000490557 ERCC6L2Q5T890 1561 aa1.46□□□□□ -2.18
HMGB1P38-201ENST00000490557 CEP170BQ9Y4F5 1589 aaPredicted RBP1.46□□□□□ -2.18
HMGB1P38-201ENST00000490557 RP1L1Q8IWN7 2480 aaPredicted RBP1.45□□□□□ -2.18
HMGB1P38-201ENST00000490557 NHSL1Q5SYE7 1610 aa1.45□□□□□ -2.18
HMGB1P38-201ENST00000490557 C3orf79P0CE67 100 aa1.45□□□□□ -2.18
HMGB1P38-201ENST00000490557 NREPQ16612 68 aa1.45□□□□□ -2.18
HMGB1P38-201ENST00000490557 GOLGA4Q13439 2230 aaKnown RBP1.44□□□□□ -2.18
HMGB1P38-201ENST00000490557 CD163L1Q9NR16 1453 aa1.44□□□□□ -2.18
HMGB1P38-201ENST00000490557 XRN1Q8IZH2 1706 aaKnown RBP1.44□□□□□ -2.18
HMGB1P38-201ENST00000490557 EEA1Q15075 1411 aa1.44□□□□□ -2.18
HMGB1P38-201ENST00000490557 LRRC7Q96NW7 1537 aa1.44□□□□□ -2.18
HMGB1P38-201ENST00000490557 ARFGEF2Q9Y6D5 1785 aa1.44□□□□□ -2.18
HMGB1P38-201ENST00000490557 AHCTF1Q8WYP5 2266 aa1.43□□□□□ -2.18
HMGB1P38-201ENST00000490557 ANKRD50Q9ULJ7 1429 aa1.43□□□□□ -2.18
HMGB1P38-201ENST00000490557 ANKRD36A6QL64 1941 aa1.43□□□□□ -2.18
HMGB1P38-201ENST00000490557 FXYD6-FXYD2A0A087WZ82 144 aa1.43□□□□□ -2.18
HMGB1P38-201ENST00000490557 LRP6O75581 1613 aa1.43□□□□□ -2.18
HMGB1P38-201ENST00000490557 TENM1Q9UKZ4 2725 aa1.43□□□□□ -2.18
HMGB1P38-201ENST00000490557 KMT2BQ9UMN6 2715 aaPredicted RBP1.43□□□□□ -2.18
HMGB1P38-201ENST00000490557 LINC00959A0A1B0GUT2 108 aa1.42□□□□□ -2.18
HMGB1P38-201ENST00000490557 HMGA1P17096 107 aaKnown RBP1.42□□□□□ -2.18
HMGB1P38-201ENST00000490557 COX7BP24311 80 aa1.42□□□□□ -2.18
HMGB1P38-201ENST00000490557 SPINK9Q5DT21 86 aa1.42□□□□□ -2.18
HMGB1P38-201ENST00000490557 RGPD1P0DJD0 1748 aa1.42□□□□□ -2.18
HMGB1P38-201ENST00000490557 NAV3Q8IVL0 2385 aa1.42□□□□□ -2.18
HMGB1P38-201ENST00000490557 CDC42BPGQ6DT37 1551 aa1.42□□□□□ -2.18
HMGB1P38-201ENST00000490557 THOC2Q8NI27 1593 aaKnown RBP1.42□□□□□ -2.18
HMGB1P38-201ENST00000490557 FCGBPQ9Y6R7 5405 aaPredicted RBP1.41□□□□□ -2.18
HMGB1P38-201ENST00000490557 LMTK2Q8IWU2 1503 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms