RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 A6NJY4 79 aa10.68□□□□□ -0.7
SYNE1-227ENST00000489156 SPANXDQ9BXN6 97 aa10.68□□□□□ -0.7
SYNE1-227ENST00000489156 SPANXCQ9NY87 97 aa10.68□□□□□ -0.7
SYNE1-227ENST00000489156 APOMO95445 188 aa10.67□□□□□ -0.7
SYNE1-227ENST00000489156 PRSS2P07478 247 aa10.67□□□□□ -0.7
SYNE1-227ENST00000489156 C6orf226Q5I0X4 101 aa10.67□□□□□ -0.7
SYNE1-227ENST00000489156 KMT2AQ03164 3969 aa10.66□□□□□ -0.7
SYNE1-227ENST00000489156 K7EP13 123 aa10.66□□□□□ -0.7
SYNE1-227ENST00000489156 LCE6AA0A183 80 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 SMIM13P0DJ93 91 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 CXCL5P42830 114 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 RPL24P83731 157 aaKnown RBP10.64□□□□□ -0.71
SYNE1-227ENST00000489156 ADAMTSL4-AS1Q5T5F5 129 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 A0A1B0GWB2 263 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 IBA57-AS1B1ANH7 110 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 IFITM1P13164 125 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 KRTAP26-1Q6PEX3 210 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 C1orf43Q9BWL3 253 aa10.64□□□□□ -0.71
SYNE1-227ENST00000489156 SACSQ9NZJ4 4579 aa10.63□□□□□ -0.71
SYNE1-227ENST00000489156 TAX1BP3O14907 124 aa10.63□□□□□ -0.71
SYNE1-227ENST00000489156 KIAA0087Q14695 138 aa10.63□□□□□ -0.71
SYNE1-227ENST00000489156 NHP2Q9NX24 153 aaKnown RBP10.63□□□□□ -0.71
SYNE1-227ENST00000489156 A0A1B0GV90 55 aa10.62□□□□□ -0.71
SYNE1-227ENST00000489156 M0R2N4 97 aa10.62□□□□□ -0.71
SYNE1-227ENST00000489156 MEIG1Q5JSS6 88 aa10.62□□□□□ -0.71
SYNE1-227ENST00000489156 COPS9Q8WXC6 57 aa10.62□□□□□ -0.71
SYNE1-227ENST00000489156 CKS1BP61024 79 aa10.61□□□□□ -0.71
SYNE1-227ENST00000489156 CFAP161Q6P656 301 aa10.61□□□□□ -0.71
SYNE1-227ENST00000489156 MUSTN1Q8IVN3 82 aa10.61□□□□□ -0.71
SYNE1-227ENST00000489156 KRTAP1-5Q9BYS1 174 aa10.61□□□□□ -0.71
SYNE1-227ENST00000489156 HYDINQ4G0P3 5121 aa10.61□□□□□ -0.71
SYNE1-227ENST00000489156 NBDYA0A0U1RRE5 68 aa10.61□□□□□ -0.71
SYNE1-227ENST00000489156 PPDPFQ9H3Y8 114 aa10.61□□□□□ -0.71
SYNE1-227ENST00000489156 COX11Q9Y6N1 276 aa10.61□□□□□ -0.71
SYNE1-227ENST00000489156 KMT2CQ8NEZ4 4911 aaKnown RBP10.6□□□□□ -0.71
SYNE1-227ENST00000489156 IGKV2D-24A0A075B6R9 120 aa10.58□□□□□ -0.72
SYNE1-227ENST00000489156 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-227ENST00000489156 A4D1N5 150 aa10.58□□□□□ -0.72
SYNE1-227ENST00000489156 SPAG11BQ08648 103 aa10.58□□□□□ -0.72
SYNE1-227ENST00000489156 RMI2Q96E14 147 aa10.58□□□□□ -0.72
SYNE1-227ENST00000489156 DNAH6Q9C0G6 4158 aa10.57□□□□□ -0.72
SYNE1-227ENST00000489156 C9orf118A6NHY6 69 aa10.57□□□□□ -0.72
SYNE1-227ENST00000489156 COX17Q14061 63 aa10.57□□□□□ -0.72
SYNE1-227ENST00000489156 TTC32Q5I0X7 151 aa10.57□□□□□ -0.72
SYNE1-227ENST00000489156 C2orf82Q6UX34 121 aa10.57□□□□□ -0.72
SYNE1-227ENST00000489156 LINC00308Q8TCZ7 52 aa10.57□□□□□ -0.72
SYNE1-227ENST00000489156 ERG28Q9UKR5 140 aa10.57□□□□□ -0.72
SYNE1-227ENST00000489156 K7ERJ3 54 aa10.56□□□□□ -0.72
SYNE1-227ENST00000489156 CFC1BP0CG36 223 aa10.56□□□□□ -0.72
SYNE1-227ENST00000489156 CFC1P0CG37 223 aa10.56□□□□□ -0.72
SYNE1-227ENST00000489156 Q6ZR54 194 aa10.56□□□□□ -0.72
SYNE1-227ENST00000489156 DAND5Q8N907 189 aa10.56□□□□□ -0.72
SYNE1-227ENST00000489156 RAB37Q96AX2 223 aa10.56□□□□□ -0.72
SYNE1-227ENST00000489156 A0A0B4J2C4 111 aa10.55□□□□□ -0.72
SYNE1-227ENST00000489156 A0A0U1RRA0 63 aa10.55□□□□□ -0.72
SYNE1-227ENST00000489156 LINC00158P58513 81 aa10.55□□□□□ -0.72
SYNE1-227ENST00000489156 Q9HAA7 133 aa10.55□□□□□ -0.72
SYNE1-227ENST00000489156 NTN5Q8WTR8 489 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-227ENST00000489156 MIR7-3HGQ8N6C7 128 aa10.54□□□□□ -0.72
SYNE1-227ENST00000489156 F8WDY8 70 aa10.53□□□□□ -0.72
SYNE1-227ENST00000489156 ZNF561-AS1K7EIQ3 104 aa10.53□□□□□ -0.72
SYNE1-227ENST00000489156 GVQW2A0A096LPI5 108 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-227ENST00000489156 PFN2P35080 140 aa10.53□□□□□ -0.72
SYNE1-227ENST00000489156 PRO1854Q9UHT4 67 aa10.53□□□□□ -0.72
SYNE1-227ENST00000489156 NPC2P61916 151 aa10.52□□□□□ -0.73
SYNE1-227ENST00000489156 C15orf56Q8N910 161 aa10.52□□□□□ -0.73
SYNE1-227ENST00000489156 H3BUT2 72 aa10.51□□□□□ -0.73
SYNE1-227ENST00000489156 EIF4EBP3O60516 100 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-227ENST00000489156 SOSTDC1Q6X4U4 206 aa10.51□□□□□ -0.73
SYNE1-227ENST00000489156 C6orf223Q8N319 242 aa10.51□□□□□ -0.73
SYNE1-227ENST00000489156 C2orf48Q96LS8 159 aa10.51□□□□□ -0.73
SYNE1-227ENST00000489156 UNQ6190/PRO20217Q6UXQ8 127 aa10.51□□□□□ -0.73
SYNE1-227ENST00000489156 DNAH2Q9P225 4427 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 LOC107984156A0A0G2JMH3 177 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 TRBV30A0A0K0K1B3 111 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 ARL17AQ8IVW1 177 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 PGPEP1Q9NXJ5 209 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 DNAH10Q8IVF4 4471 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 RYR2Q92736 4967 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 A0A1W2PPM0 123 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 C10orf25Q5T742 122 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 C1orf134Q5TEV5 83 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 LINC00526Q96FQ7 95 aa10.49□□□□□ -0.73
SYNE1-227ENST00000489156 VAMP3Q15836 100 aa10.48□□□□□ -0.73
SYNE1-227ENST00000489156 HIGD2BQ4VC39 106 aa10.48□□□□□ -0.73
SYNE1-227ENST00000489156 CAMK2N2Q96S95 79 aa10.48□□□□□ -0.73
SYNE1-227ENST00000489156 FABP2P12104 132 aa10.47□□□□□ -0.73
SYNE1-227ENST00000489156 TSPAN13O95857 204 aa10.46□□□□□ -0.74
SYNE1-227ENST00000489156 C9orf116Q5BN46 136 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-227ENST00000489156 SND1-IT1Q9HBX3 110 aa10.46□□□□□ -0.74
SYNE1-227ENST00000489156 Q6ZRN7 208 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-227ENST00000489156 NAA38Q9BRA0 125 aaKnown RBP10.45□□□□□ -0.74
SYNE1-227ENST00000489156 C6orf48Q9UBA6 75 aa10.45□□□□□ -0.74
SYNE1-227ENST00000489156 USP17L23D6RBM5 183 aa10.44□□□□□ -0.74
SYNE1-227ENST00000489156 UBE2V1Q13404 147 aa10.43□□□□□ -0.74
SYNE1-227ENST00000489156 RTL8CO15255 209 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 PSCAO43653 123 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 SYCNQ0VAF6 134 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 LYRM7Q5U5X0 104 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 Q6ZRU5 148 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms