RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SLPIP03973 132 aa7.89□□□□□ -1.15
HDAC6-228ENST00000486227 AMELXQ99217 191 aa7.89□□□□□ -1.15
HDAC6-228ENST00000486227 A0A087WZ39 114 aa7.88□□□□□ -1.15
HDAC6-228ENST00000486227 LINC00242Q5T6M2 205 aa7.88□□□□□ -1.15
HDAC6-228ENST00000486227 XAGE1AQ9HD64 81 aa7.88□□□□□ -1.15
HDAC6-228ENST00000486227 CHCHD7Q9BUK0 85 aa7.88□□□□□ -1.15
HDAC6-228ENST00000486227 KIF25-AS1Q9Y6Z4 181 aa7.88□□□□□ -1.15
HDAC6-228ENST00000486227 BEAN1Q3B7T3 259 aa7.87□□□□□ -1.15
HDAC6-228ENST00000486227 FAM19A5Q7Z5A7 132 aaPredicted RBP7.87□□□□□ -1.15
HDAC6-228ENST00000486227 C7orf33Q8WU49 177 aa7.87□□□□□ -1.15
HDAC6-228ENST00000486227 HIGD2AQ9BW72 106 aa7.87□□□□□ -1.15
HDAC6-228ENST00000486227 NREPQ16612 68 aa7.87□□□□□ -1.15
HDAC6-228ENST00000486227 CD164L2Q6UWJ8 174 aa7.87□□□□□ -1.15
HDAC6-228ENST00000486227 LAMA1P25391 3075 aa7.87□□□□□ -1.15
HDAC6-228ENST00000486227 SMIM11BQ8TCY0 68 aa7.87□□□□□ -1.15
HDAC6-228ENST00000486227 DSPP15924 2871 aaKnown RBP7.87□□□□□ -1.15
HDAC6-228ENST00000486227 NHLRC4P0CG21 123 aaPredicted RBP7.86□□□□□ -1.15
HDAC6-228ENST00000486227 BRK1Q8WUW1 75 aa7.86□□□□□ -1.15
HDAC6-228ENST00000486227 CFAP46Q8IYW2 2715 aa7.86□□□□□ -1.15
HDAC6-228ENST00000486227 LRCOL1A6NCL2 159 aa7.86□□□□□ -1.15
HDAC6-228ENST00000486227 FHL2Q14192 279 aa7.86□□□□□ -1.15
HDAC6-228ENST00000486227 PPDPFQ9H3Y8 114 aa7.86□□□□□ -1.15
HDAC6-228ENST00000486227 RPL28P46779 137 aaKnown RBP7.85□□□□□ -1.15
HDAC6-228ENST00000486227 CSDC2Q9Y534 153 aaKnown RBP7.85□□□□□ -1.15
HDAC6-228ENST00000486227 FLNAP21333 2647 aaKnown RBP7.85□□□□□ -1.15
HDAC6-228ENST00000486227 Q6ZTC4 211 aa7.85□□□□□ -1.15
HDAC6-228ENST00000486227 KRTAP24-1Q3LI83 254 aa7.84□□□□□ -1.15
HDAC6-228ENST00000486227 FAM19A4Q96LR4 140 aa7.84□□□□□ -1.15
HDAC6-228ENST00000486227 IGLV4-60A0A075B6I1 120 aa7.84□□□□□ -1.15
HDAC6-228ENST00000486227 AKAP13Q12802 2813 aa7.84□□□□□ -1.15
HDAC6-228ENST00000486227 COX7BP24311 80 aa7.84□□□□□ -1.15
HDAC6-228ENST00000486227 NDUFC1O43677 76 aa7.84□□□□□ -1.15
HDAC6-228ENST00000486227 NDUFB1O75438 58 aa7.84□□□□□ -1.15
HDAC6-228ENST00000486227 FSHBP01225 129 aa7.84□□□□□ -1.15
HDAC6-228ENST00000486227 NDUFC2-KCTD14E9PQ53 114 aa7.83□□□□□ -1.16
HDAC6-228ENST00000486227 SMIM1B2RUZ4 78 aa7.83□□□□□ -1.16
HDAC6-228ENST00000486227 NDUFS5O43920 106 aa7.83□□□□□ -1.16
HDAC6-228ENST00000486227 ATP5EP56381 51 aaPredicted RBP7.83□□□□□ -1.16
HDAC6-228ENST00000486227 LINC00315P59091 139 aa7.83□□□□□ -1.16
HDAC6-228ENST00000486227 HELZ2Q9BYK8 2649 aaKnown RBP7.83□□□□□ -1.16
HDAC6-228ENST00000486227 COX6A2Q02221 97 aa7.83□□□□□ -1.16
HDAC6-228ENST00000486227 ITPR3Q14573 2671 aa7.82□□□□□ -1.16
HDAC6-228ENST00000486227 KLK9Q2XQG4 91 aa7.82□□□□□ -1.16
HDAC6-228ENST00000486227 C11orf72Q8NBR9 251 aa7.82□□□□□ -1.16
HDAC6-228ENST00000486227 USP24Q9UPU5 2620 aa7.82□□□□□ -1.16
HDAC6-228ENST00000486227 LOC107984640A0A0U1RRK4 108 aa7.82□□□□□ -1.16
HDAC6-228ENST00000486227 HRCT1Q6UXD1 115 aa7.82□□□□□ -1.16
HDAC6-228ENST00000486227 FAM19A1Q7Z5A9 133 aa7.82□□□□□ -1.16
HDAC6-228ENST00000486227 MUC4Q99102 2169 aa7.82□□□□□ -1.16
HDAC6-228ENST00000486227 A0A087WVE0 104 aa7.81□□□□□ -1.16
HDAC6-228ENST00000486227 CCKP06307 115 aa7.81□□□□□ -1.16
HDAC6-228ENST00000486227 MGAM2Q2M2H8 2515 aa7.81□□□□□ -1.16
HDAC6-228ENST00000486227 MAP1AP78559 2803 aaPredicted RBP7.81□□□□□ -1.16
HDAC6-228ENST00000486227 FHL3Q13643 280 aa7.81□□□□□ -1.16
HDAC6-228ENST00000486227 C6orf99Q4VX62 202 aa7.8□□□□□ -1.16
HDAC6-228ENST00000486227 VCANP13611 3396 aa7.8□□□□□ -1.16
HDAC6-228ENST00000486227 SMIM26A0A096LP01 95 aa7.79□□□□□ -1.16
HDAC6-228ENST00000486227 CRYGAP11844 174 aa7.79□□□□□ -1.16
HDAC6-228ENST00000486227 SERP1Q9Y6X1 66 aa7.78□□□□□ -1.16
HDAC6-228ENST00000486227 TRAV7A0A075B6U4 112 aa7.78□□□□□ -1.16
HDAC6-228ENST00000486227 Q8IZM0 81 aa7.78□□□□□ -1.16
HDAC6-228ENST00000486227 Q9UF83 564 aa7.78□□□□□ -1.16
HDAC6-228ENST00000486227 RPS28P62857 69 aaKnown RBP7.77□□□□□ -1.16
HDAC6-228ENST00000486227 ATRQ13535 2644 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 A0A087WYN8 130 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 BPY2O14599 106 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 SNURFQ9Y675 71 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 A0A096LNT2 108 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 CYSRT1A8MQ03 144 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 UNQ6190/PRO20217Q6UXQ8 127 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 WFDC9Q8NEX5 89 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 LINC00474Q9P2X8 69 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 CELSR3Q9NYQ7 3312 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 A0A096LNI7 61 aa7.77□□□□□ -1.17
HDAC6-228ENST00000486227 MPLKIPQ8TAP9 179 aa7.76□□□□□ -1.17
HDAC6-228ENST00000486227 MAST4O15021 2626 aa7.76□□□□□ -1.17
HDAC6-228ENST00000486227 SCXQ7RTU7 201 aa7.76□□□□□ -1.17
HDAC6-228ENST00000486227 MP68P56378 58 aa7.76□□□□□ -1.17
HDAC6-228ENST00000486227 LINC00846Q9NV44 126 aa7.76□□□□□ -1.17
HDAC6-228ENST00000486227 C9orf116Q5BN46 136 aaPredicted RBP7.75□□□□□ -1.17
HDAC6-228ENST00000486227 DNAH14Q0VDD8 3507 aa7.75□□□□□ -1.17
HDAC6-228ENST00000486227 IGLV5-39A0A0G2JS06 123 aa7.74□□□□□ -1.17
HDAC6-228ENST00000486227 A0A0U1RQV1 116 aa7.74□□□□□ -1.17
HDAC6-228ENST00000486227 Q6ZQY7 126 aa7.74□□□□□ -1.17
HDAC6-228ENST00000486227 V9GYY9 64 aa7.74□□□□□ -1.17
HDAC6-228ENST00000486227 IGKV2-28A0A075B6P5 120 aa7.73□□□□□ -1.17
HDAC6-228ENST00000486227 IGKV2D-28P01615 120 aa7.73□□□□□ -1.17
HDAC6-228ENST00000486227 C1orf134Q5TEV5 83 aa7.73□□□□□ -1.17
HDAC6-228ENST00000486227 NTM-AS1Q6ZSK4 140 aa7.73□□□□□ -1.17
HDAC6-228ENST00000486227 Q8N814 137 aa7.73□□□□□ -1.17
HDAC6-228ENST00000486227 CELA1Q9UNI1 258 aa7.72□□□□□ -1.17
HDAC6-228ENST00000486227 A0A1B0GUV1 79 aa7.71□□□□□ -1.17
HDAC6-228ENST00000486227 COL6A3P12111 3177 aa7.71□□□□□ -1.17
HDAC6-228ENST00000486227 M0R378 163 aa7.71□□□□□ -1.17
HDAC6-228ENST00000486227 COX17Q14061 63 aa7.71□□□□□ -1.17
HDAC6-228ENST00000486227 LINC00337Q8N6G1 96 aa7.71□□□□□ -1.18
HDAC6-228ENST00000486227 PRR3P79522 188 aaKnown RBP7.71□□□□□ -1.18
HDAC6-228ENST00000486227 FAM19A3Q7Z5A8 133 aa7.7□□□□□ -1.18
HDAC6-228ENST00000486227 WFDC10BQ8IUB3 73 aa7.7□□□□□ -1.18
HDAC6-228ENST00000486227 IGLV5-52A0A0A0MRZ9 124 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms