RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 ERASQ7Z444 233 aa11.35□□□□□ -0.59
PRPF40A-209ENST00000486100 GAGE2DQ9UEU5 116 aa11.35□□□□□ -0.59
PRPF40A-209ENST00000486100 LINC01546A6NGU7 62 aa11.34□□□□□ -0.59
PRPF40A-209ENST00000486100 SCO1O75880 301 aa11.34□□□□□ -0.59
PRPF40A-209ENST00000486100 PRSS2P07478 247 aa11.34□□□□□ -0.59
PRPF40A-209ENST00000486100 SCGB3A1Q96QR1 104 aa11.34□□□□□ -0.59
PRPF40A-209ENST00000486100 FAM168BA1KXE4 195 aa11.33□□□□□ -0.6
PRPF40A-209ENST00000486100 LINC01549A6NIU2 74 aa11.33□□□□□ -0.6
PRPF40A-209ENST00000486100 COLCA2A8K830 154 aa11.33□□□□□ -0.6
PRPF40A-209ENST00000486100 C6orf226Q5I0X4 101 aa11.33□□□□□ -0.6
PRPF40A-209ENST00000486100 TOMM7Q9P0U1 55 aa11.33□□□□□ -0.6
PRPF40A-209ENST00000486100 NDUFC2-KCTD14E9PQ53 114 aa11.32□□□□□ -0.6
PRPF40A-209ENST00000486100 FABP9Q0Z7S8 132 aa11.32□□□□□ -0.6
PRPF40A-209ENST00000486100 Q8IZM0 81 aa11.32□□□□□ -0.6
PRPF40A-209ENST00000486100 GEMIN7Q9H840 131 aaKnown RBP11.32□□□□□ -0.6
PRPF40A-209ENST00000486100 CDKN2A-AS1Q9UH64 79 aa11.32□□□□□ -0.6
PRPF40A-209ENST00000486100 TNXBP22105 4242 aa11.32□□□□□ -0.6
PRPF40A-209ENST00000486100 CKS1BP61024 79 aa11.31□□□□□ -0.6
PRPF40A-209ENST00000486100 C1orf137Q5JT78 98 aa11.31□□□□□ -0.6
PRPF40A-209ENST00000486100 MRPL18Q9H0U6 180 aaKnown RBP11.31□□□□□ -0.6
PRPF40A-209ENST00000486100 FAM19A5Q7Z5A7 132 aaPredicted RBP11.3□□□□□ -0.6
PRPF40A-209ENST00000486100 KRTAP10-8P60410 259 aa11.29□□□□□ -0.6
PRPF40A-209ENST00000486100 KRTAP7-1Q8IUC3 87 aa11.29□□□□□ -0.6
PRPF40A-209ENST00000486100 TRAPPC1Q9Y5R8 145 aa11.29□□□□□ -0.6
PRPF40A-209ENST00000486100 C9orf129Q5T035 196 aaKnown RBP11.28□□□□□ -0.6
PRPF40A-209ENST00000486100 FA2HQ7L5A8 372 aa11.28□□□□□ -0.6
PRPF40A-209ENST00000486100 TINCRA0A1B0GVN0 87 aa11.27□□□□□ -0.61
PRPF40A-209ENST00000486100 KRTAP11-1Q8IUC1 163 aa11.27□□□□□ -0.61
PRPF40A-209ENST00000486100 CST9LQ9H4G1 147 aa11.27□□□□□ -0.61
PRPF40A-209ENST00000486100 LINC00469Q8N7U9 141 aa11.26□□□□□ -0.61
PRPF40A-209ENST00000486100 F8VRH5 84 aa11.25□□□□□ -0.61
PRPF40A-209ENST00000486100 M0QXV9 152 aa11.25□□□□□ -0.61
PRPF40A-209ENST00000486100 IGLV7-43P04211 117 aa11.25□□□□□ -0.61
PRPF40A-209ENST00000486100 IGLV5-45A0A087WSX0 123 aa11.24□□□□□ -0.61
PRPF40A-209ENST00000486100 SMIM1B2RUZ4 78 aa11.24□□□□□ -0.61
PRPF40A-209ENST00000486100 CXCL5P42830 114 aa11.24□□□□□ -0.61
PRPF40A-209ENST00000486100 PMVKQ15126 192 aa11.24□□□□□ -0.61
PRPF40A-209ENST00000486100 PDZD11Q5EBL8 140 aa11.24□□□□□ -0.61
PRPF40A-209ENST00000486100 UBR4Q5T4S7 5183 aa11.23□□□□□ -0.61
PRPF40A-209ENST00000486100 UBE2BP63146 152 aa11.23□□□□□ -0.61
PRPF40A-209ENST00000486100 TRGC2P03986 189 aa11.21□□□□□ -0.61
PRPF40A-209ENST00000486100 COX7B2Q8TF08 81 aa11.21□□□□□ -0.61
PRPF40A-209ENST00000486100 DIRC1Q969H9 104 aa11.21□□□□□ -0.61
PRPF40A-209ENST00000486100 LINC00614P0C842 121 aa11.2□□□□□ -0.62
PRPF40A-209ENST00000486100 C18orf32Q8TCD1 76 aa11.2□□□□□ -0.62
PRPF40A-209ENST00000486100 XAGE1AQ9HD64 81 aa11.2□□□□□ -0.62
PRPF40A-209ENST00000486100 ODF1Q14990 250 aa11.19□□□□□ -0.62
PRPF40A-209ENST00000486100 URB1-AS1Q96HZ7 61 aa11.19□□□□□ -0.62
PRPF40A-209ENST00000486100 C22orf24Q9Y442 160 aa11.19□□□□□ -0.62
PRPF40A-209ENST00000486100 A0A096LNJ9 63 aa11.18□□□□□ -0.62
PRPF40A-209ENST00000486100 SPINK8P0C7L1 97 aa11.18□□□□□ -0.62
PRPF40A-209ENST00000486100 H0Y9J4 135 aa11.17□□□□□ -0.62
PRPF40A-209ENST00000486100 H3BRM9 83 aa11.17□□□□□ -0.62
PRPF40A-209ENST00000486100 IGLC3P0DOY3 106 aa11.16□□□□□ -0.62
PRPF40A-209ENST00000486100 NDUFA6P56556 154 aa11.16□□□□□ -0.62
PRPF40A-209ENST00000486100 RAB5BP61020 215 aa11.16□□□□□ -0.62
PRPF40A-209ENST00000486100 LBHQ53QV2 105 aaPredicted RBP11.16□□□□□ -0.62
PRPF40A-209ENST00000486100 HBDP02042 147 aa11.15□□□□□ -0.62
PRPF40A-209ENST00000486100 TP73-AS1Q9UF72 201 aa11.14□□□□□ -0.63
PRPF40A-209ENST00000486100 PMCHL1Q16048 86 aa11.13□□□□□ -0.63
PRPF40A-209ENST00000486100 NUPR1O60356 82 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BKO60814 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BJP06899 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BOP23527 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BBP33778 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BDP58876 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BCP62807 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST2H2BEQ16778 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 MRPL55Q7Z7F7 128 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BHQ93079 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BNQ99877 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 HIST1H2BMQ99879 126 aa11.12□□□□□ -0.63
PRPF40A-209ENST00000486100 IGLV5-39A0A0G2JS06 123 aa11.11□□□□□ -0.63
PRPF40A-209ENST00000486100 ATP5LO75964 103 aa11.11□□□□□ -0.63
PRPF40A-209ENST00000486100 ZNF22P17026 224 aaPredicted RBP11.11□□□□□ -0.63
PRPF40A-209ENST00000486100 PRR26Q8N8Z3 221 aa11.11□□□□□ -0.63
PRPF40A-209ENST00000486100 ZNF861PO60384 105 aa11.1□□□□□ -0.63
PRPF40A-209ENST00000486100 CHCHD1Q96BP2 118 aaKnown RBP11.1□□□□□ -0.63
PRPF40A-209ENST00000486100 BAGE3Q86Y29 109 aa11.09□□□□□ -0.63
PRPF40A-209ENST00000486100 KRTAP1-4P0C5Y4 121 aa11.08□□□□□ -0.64
PRPF40A-209ENST00000486100 COA6Q5JTJ3 125 aaKnown RBP11.08□□□□□ -0.64
PRPF40A-209ENST00000486100 LINC00167Q96N53 147 aa11.08□□□□□ -0.64
PRPF40A-209ENST00000486100 IGLV1-50A0A075B6I6 118 aa11.07□□□□□ -0.64
PRPF40A-209ENST00000486100 LRP2P98164 4655 aa11.06□□□□□ -0.64
PRPF40A-209ENST00000486100 IGLV5-37A0A075B6J1 123 aa11.06□□□□□ -0.64
PRPF40A-209ENST00000486100 C11orf86A6NJI1 115 aa11.06□□□□□ -0.64
PRPF40A-209ENST00000486100 PFN2P35080 140 aa11.05□□□□□ -0.64
PRPF40A-209ENST00000486100 TMEM170BQ5T4T1 132 aa11.05□□□□□ -0.64
PRPF40A-209ENST00000486100 RPL37AP8A6NKH3 93 aa11.04□□□□□ -0.64
PRPF40A-209ENST00000486100 BCE1O60756 84 aa11.04□□□□□ -0.64
PRPF40A-209ENST00000486100 HSBP1O75506 76 aa11.03□□□□□ -0.64
PRPF40A-209ENST00000486100 NKAPP1Q8N9T2 125 aa11.03□□□□□ -0.64
PRPF40A-209ENST00000486100 ERG28Q9UKR5 140 aa11.03□□□□□ -0.64
PRPF40A-209ENST00000486100 CHTOPQ9Y3Y2 248 aaKnown RBP11.03□□□□□ -0.64
PRPF40A-209ENST00000486100 GAGE10A6NGK3 116 aa11.02□□□□□ -0.65
PRPF40A-209ENST00000486100 SERF1AO75920 110 aa11.02□□□□□ -0.65
PRPF40A-209ENST00000486100 S100A6P06703 90 aa11.02□□□□□ -0.65
PRPF40A-209ENST00000486100 RPL28P46779 137 aaKnown RBP11.02□□□□□ -0.65
PRPF40A-209ENST00000486100 COX17Q14061 63 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms