RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 MUC7Q8TAX7 377 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 RNASE6Q93091 150 aaKnown RBP3.41□□□□□ -1.86
USP40-213ENST00000483216 AMELXQ99217 191 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 TMEM243Q9BU79 118 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 CADP27708 2225 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 DIDO1Q9BTC0 2240 aaKnown RBP3.4□□□□□ -1.86
USP40-213ENST00000483216 LYRM9A8MSI8 78 aa3.4□□□□□ -1.87
USP40-213ENST00000483216 J3QKU1 62 aa3.4□□□□□ -1.87
USP40-213ENST00000483216 K7EMT4 169 aa3.4□□□□□ -1.87
USP40-213ENST00000483216 KRTAP10-10P60014 251 aa3.4□□□□□ -1.87
USP40-213ENST00000483216 C10orf105Q8TEF2 133 aa3.4□□□□□ -1.87
USP40-213ENST00000483216 ORMDL1Q9P0S3 153 aa3.4□□□□□ -1.87
USP40-213ENST00000483216 PTPRQQ9UMZ3 2332 aa3.4□□□□□ -1.87
USP40-213ENST00000483216 DYSFO75923 2080 aa3.4□□□□□ -1.87
USP40-213ENST00000483216 DSCAML1Q8TD84 2053 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 TRAV7A0A075B6U4 112 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 IGHV3-72A0A0B4J1Y9 119 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 ERC2-IT1O76042 136 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 PRB1P04280 392 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 PFN2P35080 140 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 DEFB116Q30KQ4 102 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 FAM19A3Q7Z5A8 133 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 ZGRF1Q86YA3 2104 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 TMEM86BQ8N661 226 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 LINC00308Q8TCZ7 52 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 ITLN2Q8WWU7 325 aaPredicted RBP3.39□□□□□ -1.87
USP40-213ENST00000483216 RPL39LQ96EH5 51 aaKnown RBP3.39□□□□□ -1.87
USP40-213ENST00000483216 FAM19A4Q96LR4 140 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 C11orf68Q9H3H3 251 aaKnown RBP3.39□□□□□ -1.87
USP40-213ENST00000483216 KLK5Q9Y337 293 aaPredicted RBP3.39□□□□□ -1.87
USP40-213ENST00000483216 PLCE1Q9P212 2302 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 ZFYVE26Q68DK2 2539 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 DSCAMO60469 2012 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 PIEZO2Q9H5I5 2752 aa3.39□□□□□ -1.87
USP40-213ENST00000483216 TET2Q6N021 2002 aaPredicted RBP3.38□□□□□ -1.87
USP40-213ENST00000483216 ODF3BA8MYP8 253 aa3.38□□□□□ -1.87
USP40-213ENST00000483216 M0QY20 66 aa3.38□□□□□ -1.87
USP40-213ENST00000483216 CCKP06307 115 aa3.38□□□□□ -1.87
USP40-213ENST00000483216 KLKP1Q107X0 134 aa3.38□□□□□ -1.87
USP40-213ENST00000483216 ZFAND2AQ8N6M9 145 aa3.38□□□□□ -1.87
USP40-213ENST00000483216 OBSCN-AS1Q96MR7 158 aa3.38□□□□□ -1.87
USP40-213ENST00000483216 BOD1L1Q8NFC6 3051 aa3.38□□□□□ -1.87
USP40-213ENST00000483216 ICE1Q9Y2F5 2266 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 A0A0J9YXV3 536 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 TRBV10-1A0A0K0K1A3 114 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 F6UB75 175 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 APELAP0DMC3 54 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 RNASE3P12724 160 aaKnown RBP3.37□□□□□ -1.87
USP40-213ENST00000483216 TSPEAR-AS2P59090 65 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 Q8N6K4 173 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 CLEC2BQ92478 149 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 UBE2D4Q9Y2X8 147 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 RP1L1Q8IWN7 2480 aaPredicted RBP3.37□□□□□ -1.87
USP40-213ENST00000483216 CFAP46Q8IYW2 2715 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 COL6A6A6NMZ7 2263 aa3.37□□□□□ -1.87
USP40-213ENST00000483216 SMG1Q96Q15 3661 aaKnown RBP3.37□□□□□ -1.87
USP40-213ENST00000483216 TRAV41A0A0B4J266 112 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 A0A1B0GW54 56 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 IBA57-AS1B1ANH7 110 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 SEC61GP60059 68 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 RPL39P62891 51 aaKnown RBP3.36□□□□□ -1.87
USP40-213ENST00000483216 BLCAPP62952 87 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 BSPH1Q075Z2 132 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 C1orf195Q5TG92 126 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 LYPD5Q6UWN5 251 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 CLEC19AQ6UXS0 136 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 KRTAP5-2Q701N4 177 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 VMO1Q7Z5L0 202 aa3.36□□□□□ -1.87
USP40-213ENST00000483216 FASNP49327 2511 aaKnown RBP3.35□□□□□ -1.87
USP40-213ENST00000483216 PCNX1Q96RV3 2341 aa3.35□□□□□ -1.87
USP40-213ENST00000483216 XCL1P47992 114 aa3.35□□□□□ -1.87
USP40-213ENST00000483216 C6orf226Q5I0X4 101 aa3.35□□□□□ -1.87
USP40-213ENST00000483216 FAM74A4Q5TZK3 123 aa3.35□□□□□ -1.87
USP40-213ENST00000483216 LINC00467Q9BRT7 94 aa3.35□□□□□ -1.87
USP40-213ENST00000483216 UPK3BQ9BT76 320 aa3.35□□□□□ -1.87
USP40-213ENST00000483216 ZNRD1Q9P1U0 126 aa3.35□□□□□ -1.87
USP40-213ENST00000483216 XCL2Q9UBD3 114 aa3.35□□□□□ -1.87
USP40-213ENST00000483216 ZNF462Q96JM2 2506 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 HELZ2Q9BYK8 2649 aaKnown RBP3.34□□□□□ -1.87
USP40-213ENST00000483216 GCN1Q92616 2671 aaKnown RBP3.34□□□□□ -1.87
USP40-213ENST00000483216 TRAV12-3A0A0B4J271 114 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 CLPSL1A2RUU4 121 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 E7EQL1 145 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 UBE2L6O14933 153 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 CMC4P56277 68 aaPredicted RBP3.34□□□□□ -1.87
USP40-213ENST00000483216 COX17Q14061 63 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 LINC00483Q53H64 154 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 LYPD2Q6UXB3 125 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 HRCT1Q6UXD1 115 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 SPTA1P02549 2419 aa3.34□□□□□ -1.87
USP40-213ENST00000483216 ARFGEF3Q5TH69 2177 aa3.34□□□□□ -1.88
USP40-213ENST00000483216 TNCP24821 2201 aa3.34□□□□□ -1.88
USP40-213ENST00000483216 ROS1P08922 2347 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 TLN1Q9Y490 2541 aaKnown RBP3.33□□□□□ -1.88
USP40-213ENST00000483216 BAHCC1Q9P281 2608 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 GNRH2O43555 120 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 RBM3P98179 157 aaKnown RBP3.33□□□□□ -1.88
USP40-213ENST00000483216 REG3AQ06141 175 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 FBXL19-AS1Q494R0 122 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 CEMP1Q6PRD7 247 aaPredicted RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms