RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 CUBNO60494 3623 aa12.64□□□□□ -0.39
CCM2-209ENST00000477605 LINC00959A0A1B0GUT2 108 aa12.63□□□□□ -0.39
CCM2-209ENST00000477605 CCL18P55774 89 aa12.63□□□□□ -0.39
CCM2-209ENST00000477605 A0A1B0GUV1 79 aa12.63□□□□□ -0.39
CCM2-209ENST00000477605 HILS1P60008 231 aa12.63□□□□□ -0.39
CCM2-209ENST00000477605 SDIM1Q6ZPB5 146 aa12.63□□□□□ -0.39
CCM2-209ENST00000477605 IGKV3OR2-268A0A0C4DH90 116 aa12.62□□□□□ -0.39
CCM2-209ENST00000477605 LINC00643Q86TS7 51 aa12.62□□□□□ -0.39
CCM2-209ENST00000477605 C22orf24Q9Y442 160 aa12.62□□□□□ -0.39
CCM2-209ENST00000477605 MALP21145 153 aa12.61□□□□□ -0.39
CCM2-209ENST00000477605 SMIM9A6NGZ8 99 aa12.61□□□□□ -0.39
CCM2-209ENST00000477605 SS18Q15532 418 aa12.6□□□□□ -0.39
CCM2-209ENST00000477605 SMIM11BQ8TCY0 68 aa12.6□□□□□ -0.39
CCM2-209ENST00000477605 DNHD1Q96M86 4753 aa12.6□□□□□ -0.39
CCM2-209ENST00000477605 C5orf38Q86SI9 138 aa12.6□□□□□ -0.39
CCM2-209ENST00000477605 ATRQ13535 2644 aa12.59□□□□□ -0.39
CCM2-209ENST00000477605 DNAL4O96015 105 aa12.58□□□□□ -0.39
CCM2-209ENST00000477605 C6orf226Q5I0X4 101 aa12.58□□□□□ -0.39
CCM2-209ENST00000477605 DEFB130BP0DP73 79 aa12.58□□□□□ -0.4
CCM2-209ENST00000477605 DEFB130AP0DP74 79 aa12.58□□□□□ -0.4
CCM2-209ENST00000477605 Q8IZM0 81 aa12.58□□□□□ -0.4
CCM2-209ENST00000477605 GYPEP15421 78 aa12.57□□□□□ -0.4
CCM2-209ENST00000477605 SVIPQ8NHG7 77 aa12.57□□□□□ -0.4
CCM2-209ENST00000477605 PRO0255Q9UI72 69 aa12.57□□□□□ -0.4
CCM2-209ENST00000477605 B5MCH6 92 aa12.55□□□□□ -0.4
CCM2-209ENST00000477605 PAX4O43316 350 aa12.55□□□□□ -0.4
CCM2-209ENST00000477605 PFN2P35080 140 aa12.55□□□□□ -0.4
CCM2-209ENST00000477605 Q9HAA7 133 aa12.55□□□□□ -0.4
CCM2-209ENST00000477605 CXCL5P42830 114 aa12.54□□□□□ -0.4
CCM2-209ENST00000477605 LINC00482Q8N8I6 264 aa12.54□□□□□ -0.4
CCM2-209ENST00000477605 MDFIQ99750 246 aa12.54□□□□□ -0.4
CCM2-209ENST00000477605 X6R8D5 127 aa12.54□□□□□ -0.4
CCM2-209ENST00000477605 FBN1P35555 2871 aaKnown RBP12.53□□□□□ -0.4
CCM2-209ENST00000477605 A0A087WYN8 130 aa12.53□□□□□ -0.4
CCM2-209ENST00000477605 LYRM9A8MSI8 78 aa12.53□□□□□ -0.4
CCM2-209ENST00000477605 CCDC179H3BU77 68 aa12.53□□□□□ -0.4
CCM2-209ENST00000477605 SMCR5Q8TEV8 140 aa12.53□□□□□ -0.4
CCM2-209ENST00000477605 OBSCN-AS1Q96MR7 158 aa12.53□□□□□ -0.4
CCM2-209ENST00000477605 COL6A5A8TX70 2615 aa12.53□□□□□ -0.4
CCM2-209ENST00000477605 ATP5G1P05496 136 aa12.52□□□□□ -0.41
CCM2-209ENST00000477605 XCL1P47992 114 aa12.52□□□□□ -0.41
CCM2-209ENST00000477605 A0A1B0GX51 115 aa12.5□□□□□ -0.41
CCM2-209ENST00000477605 COX17Q14061 63 aa12.5□□□□□ -0.41
CCM2-209ENST00000477605 OR13C6PQ8NH95 151 aa12.5□□□□□ -0.41
CCM2-209ENST00000477605 WNK1Q9H4A3 2382 aa12.49□□□□□ -0.41
CCM2-209ENST00000477605 NDUFC2O95298 119 aa12.49□□□□□ -0.41
CCM2-209ENST00000477605 GAGE2AQ6NT46 116 aa12.49□□□□□ -0.41
CCM2-209ENST00000477605 CD164L2Q6UWJ8 174 aa12.49□□□□□ -0.41
CCM2-209ENST00000477605 LECT2O14960 151 aa12.47□□□□□ -0.41
CCM2-209ENST00000477605 KRTAP10-3P60369 221 aa12.47□□□□□ -0.41
CCM2-209ENST00000477605 SS18L2Q9UHA2 77 aa12.47□□□□□ -0.41
CCM2-209ENST00000477605 FAM236AA0A1B0GUQ0 79 aa12.46□□□□□ -0.41
CCM2-209ENST00000477605 FAM236BA0A1B0GV22 79 aa12.46□□□□□ -0.41
CCM2-209ENST00000477605 KLK5Q9Y337 293 aaPredicted RBP12.46□□□□□ -0.41
CCM2-209ENST00000477605 IGHV4-28A0A0C4DH34 117 aa12.46□□□□□ -0.42
CCM2-209ENST00000477605 LINC00167Q96N53 147 aa12.46□□□□□ -0.42
CCM2-209ENST00000477605 KIAA0087Q14695 138 aa12.45□□□□□ -0.42
CCM2-209ENST00000477605 C9orf66Q5T8R8 295 aa12.45□□□□□ -0.42
CCM2-209ENST00000477605 CFAP161Q6P656 301 aa12.45□□□□□ -0.42
CCM2-209ENST00000477605 ORMDL1Q9P0S3 153 aa12.45□□□□□ -0.42
CCM2-209ENST00000477605 C11orf68Q9H3H3 251 aaKnown RBP12.44□□□□□ -0.42
CCM2-209ENST00000477605 MUC7Q8TAX7 377 aa12.43□□□□□ -0.42
CCM2-209ENST00000477605 NOTCH3Q9UM47 2321 aa12.43□□□□□ -0.42
CCM2-209ENST00000477605 KRTAP24-1Q3LI83 254 aa12.42□□□□□ -0.42
CCM2-209ENST00000477605 LINC00269Q8N2A0 174 aa12.42□□□□□ -0.42
CCM2-209ENST00000477605 CHCHD10Q8WYQ3 142 aaPredicted RBP12.42□□□□□ -0.42
CCM2-209ENST00000477605 TMEM126AQ9H061 195 aa12.42□□□□□ -0.42
CCM2-209ENST00000477605 STAB1Q9NY15 2570 aa12.41□□□□□ -0.42
CCM2-209ENST00000477605 APOC4P55056 127 aa12.41□□□□□ -0.42
CCM2-209ENST00000477605 SPATA3Q8NHX4 192 aa12.41□□□□□ -0.42
CCM2-209ENST00000477605 C14orf132Q9NPU4 83 aa12.41□□□□□ -0.42
CCM2-209ENST00000477605 CLPSL2Q6UWE3 100 aa12.41□□□□□ -0.42
CCM2-209ENST00000477605 REG3AQ06141 175 aa12.4□□□□□ -0.42
CCM2-209ENST00000477605 A0A096LPF7 62 aa12.39□□□□□ -0.43
CCM2-209ENST00000477605 NANOS2P60321 138 aaKnown RBP12.39□□□□□ -0.43
CCM2-209ENST00000477605 C9orf129Q5T035 196 aaKnown RBP12.39□□□□□ -0.43
CCM2-209ENST00000477605 Q6JHZ5 121 aa12.39□□□□□ -0.43
CCM2-209ENST00000477605 JMJD7-PLA2G4BH0Y9G9 81 aa12.38□□□□□ -0.43
CCM2-209ENST00000477605 ANGP03950 147 aaKnown RBP12.38□□□□□ -0.43
CCM2-209ENST00000477605 DAD1P61803 113 aa12.38□□□□□ -0.43
CCM2-209ENST00000477605 Q8N814 137 aa12.38□□□□□ -0.43
CCM2-209ENST00000477605 TMEM256-PLSCR3K7ERE1 68 aa12.36□□□□□ -0.43
CCM2-209ENST00000477605 HIST1H4AP62805 103 aaKnown RBP12.36□□□□□ -0.43
CCM2-209ENST00000477605 UQCRQO14949 82 aa12.36□□□□□ -0.43
CCM2-209ENST00000477605 MIFP14174 115 aa12.36□□□□□ -0.43
CCM2-209ENST00000477605 C3orf22Q8N5N4 141 aa12.36□□□□□ -0.43
CCM2-209ENST00000477605 NCR3O14931 201 aa12.35□□□□□ -0.43
CCM2-209ENST00000477605 SLPIP03973 132 aa12.35□□□□□ -0.43
CCM2-209ENST00000477605 CCKP06307 115 aa12.35□□□□□ -0.43
CCM2-209ENST00000477605 DEFB135Q30KP9 77 aa12.34□□□□□ -0.43
CCM2-209ENST00000477605 LINC00846Q9NV44 126 aa12.34□□□□□ -0.43
CCM2-209ENST00000477605 ATOX1O00244 68 aa12.33□□□□□ -0.44
CCM2-209ENST00000477605 LELP1Q5T871 98 aa12.33□□□□□ -0.44
CCM2-209ENST00000477605 S100A7L2Q5SY68 101 aa12.33□□□□□ -0.44
CCM2-209ENST00000477605 PRR3P79522 188 aaKnown RBP12.32□□□□□ -0.44
CCM2-209ENST00000477605 LINC00526Q96FQ7 95 aa12.32□□□□□ -0.44
CCM2-209ENST00000477605 SPART-AS1P0CW21 52 aa12.31□□□□□ -0.44
CCM2-209ENST00000477605 Q8NAQ8 132 aa12.31□□□□□ -0.44
CCM2-209ENST00000477605 IGLV10-54A0A075B6I4 117 aa12.31□□□□□ -0.44
CCM2-209ENST00000477605 A0A0J9YWU9 116 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms