RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CDK2AP2O75956 126 aa10.26□□□□□ -0.77
HDAC6-220ENST00000477528 SMCPP49901 116 aaPredicted RBP10.26□□□□□ -0.77
HDAC6-220ENST00000477528 AKAP13Q12802 2813 aa10.26□□□□□ -0.77
HDAC6-220ENST00000477528 M0R378 163 aa10.26□□□□□ -0.77
HDAC6-220ENST00000477528 C9orf116Q5BN46 136 aaPredicted RBP10.26□□□□□ -0.77
HDAC6-220ENST00000477528 Q6Q795 121 aa10.25□□□□□ -0.77
HDAC6-220ENST00000477528 Q6ZQY7 126 aa10.25□□□□□ -0.77
HDAC6-220ENST00000477528 A0A0J9YWU9 116 aa10.24□□□□□ -0.77
HDAC6-220ENST00000477528 A0A087WYN8 130 aa10.24□□□□□ -0.77
HDAC6-220ENST00000477528 NANOS2P60321 138 aaKnown RBP10.24□□□□□ -0.77
HDAC6-220ENST00000477528 RETNQ9HD89 108 aa10.24□□□□□ -0.77
HDAC6-220ENST00000477528 REV3LO60673 3130 aa10.24□□□□□ -0.77
HDAC6-220ENST00000477528 NDUFC2O95298 119 aa10.23□□□□□ -0.77
HDAC6-220ENST00000477528 LINC00337Q8N6G1 96 aa10.23□□□□□ -0.77
HDAC6-220ENST00000477528 SMIM20Q8N5G0 67 aa10.23□□□□□ -0.77
HDAC6-220ENST00000477528 UPK3BQ9BT76 320 aa10.23□□□□□ -0.77
HDAC6-220ENST00000477528 KLK5Q9Y337 293 aaPredicted RBP10.22□□□□□ -0.77
HDAC6-220ENST00000477528 UQCRQO14949 82 aa10.22□□□□□ -0.77
HDAC6-220ENST00000477528 X6R8D5 127 aa10.22□□□□□ -0.77
HDAC6-220ENST00000477528 SPTBN5Q9NRC6 3674 aaKnown RBP10.22□□□□□ -0.77
HDAC6-220ENST00000477528 ZNF73O43830 326 aaPredicted RBP10.22□□□□□ -0.77
HDAC6-220ENST00000477528 PRR3P79522 188 aaKnown RBP10.22□□□□□ -0.77
HDAC6-220ENST00000477528 EGFEM1PQ0D2K5 195 aa10.22□□□□□ -0.77
HDAC6-220ENST00000477528 C14orf177Q52M58 125 aa10.22□□□□□ -0.77
HDAC6-220ENST00000477528 Q8N814 137 aa10.21□□□□□ -0.77
HDAC6-220ENST00000477528 SBSPONQ8IVN8 264 aa10.21□□□□□ -0.77
HDAC6-220ENST00000477528 CDIP1Q9H305 208 aa10.21□□□□□ -0.77
HDAC6-220ENST00000477528 Q6ZTC4 211 aa10.21□□□□□ -0.78
HDAC6-220ENST00000477528 LITAFQ99732 161 aa10.2□□□□□ -0.78
HDAC6-220ENST00000477528 FASNP49327 2511 aaKnown RBP10.2□□□□□ -0.78
HDAC6-220ENST00000477528 LYPD5Q6UWN5 251 aa10.2□□□□□ -0.78
HDAC6-220ENST00000477528 IGKV2-24A0A0C4DH68 120 aa10.19□□□□□ -0.78
HDAC6-220ENST00000477528 SOSTDC1Q6X4U4 206 aa10.19□□□□□ -0.78
HDAC6-220ENST00000477528 CELA1Q9UNI1 258 aa10.19□□□□□ -0.78
HDAC6-220ENST00000477528 ENHOQ6UWT2 76 aa10.18□□□□□ -0.78
HDAC6-220ENST00000477528 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.18□□□□□ -0.78
HDAC6-220ENST00000477528 C6orf223Q8N319 242 aa10.17□□□□□ -0.78
HDAC6-220ENST00000477528 UBE2AP49459 152 aa10.17□□□□□ -0.78
HDAC6-220ENST00000477528 C3orf22Q8N5N4 141 aa10.17□□□□□ -0.78
HDAC6-220ENST00000477528 CCKP06307 115 aa10.17□□□□□ -0.78
HDAC6-220ENST00000477528 Q6JHZ5 121 aa10.17□□□□□ -0.78
HDAC6-220ENST00000477528 IGKV2-28A0A075B6P5 120 aa10.16□□□□□ -0.78
HDAC6-220ENST00000477528 TRBV10-3A0A0K0K1G6 114 aa10.16□□□□□ -0.78
HDAC6-220ENST00000477528 IGKV2D-28P01615 120 aa10.16□□□□□ -0.78
HDAC6-220ENST00000477528 IL17DQ8TAD2 202 aa10.16□□□□□ -0.78
HDAC6-220ENST00000477528 BPY2O14599 106 aa10.15□□□□□ -0.78
HDAC6-220ENST00000477528 FAM19A5Q7Z5A7 132 aaPredicted RBP10.15□□□□□ -0.78
HDAC6-220ENST00000477528 CSNK1G2-AS1Q8NCQ2 148 aa10.15□□□□□ -0.78
HDAC6-220ENST00000477528 DSPP15924 2871 aaKnown RBP10.15□□□□□ -0.78
HDAC6-220ENST00000477528 FAM19A3Q7Z5A8 133 aa10.15□□□□□ -0.79
HDAC6-220ENST00000477528 WFDC10BQ8IUB3 73 aa10.15□□□□□ -0.79
HDAC6-220ENST00000477528 KRTAP1-3Q8IUG1 177 aa10.14□□□□□ -0.79
HDAC6-220ENST00000477528 DHRS4-AS1Q9P1J3 65 aa10.14□□□□□ -0.79
HDAC6-220ENST00000477528 CELSR3Q9NYQ7 3312 aa10.13□□□□□ -0.79
HDAC6-220ENST00000477528 PRB2P02812 416 aaPredicted RBP10.13□□□□□ -0.79
HDAC6-220ENST00000477528 USP17L23D6RBM5 183 aa10.13□□□□□ -0.79
HDAC6-220ENST00000477528 HIGD2AQ9BW72 106 aa10.12□□□□□ -0.79
HDAC6-220ENST00000477528 CCDC179H3BU77 68 aa10.12□□□□□ -0.79
HDAC6-220ENST00000477528 C2orf48Q96LS8 159 aa10.12□□□□□ -0.79
HDAC6-220ENST00000477528 J3KT08 172 aa10.11□□□□□ -0.79
HDAC6-220ENST00000477528 NDUFC2-KCTD14E9PQ53 114 aa10.11□□□□□ -0.79
HDAC6-220ENST00000477528 F8WDY8 70 aa10.11□□□□□ -0.79
HDAC6-220ENST00000477528 GIG44P09565 113 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-220ENST00000477528 FAM19A1Q7Z5A9 133 aa10.11□□□□□ -0.79
HDAC6-220ENST00000477528 LOC107984640A0A0U1RRK4 108 aa10.1□□□□□ -0.79
HDAC6-220ENST00000477528 C19orf73Q9NVV2 129 aa10.1□□□□□ -0.79
HDAC6-220ENST00000477528 SCXQ7RTU7 201 aa10.1□□□□□ -0.79
HDAC6-220ENST00000477528 SERP2Q8N6R1 65 aa10.1□□□□□ -0.79
HDAC6-220ENST00000477528 LINC00575Q6W349 94 aa10.09□□□□□ -0.79
HDAC6-220ENST00000477528 B9D2Q9BPU9 175 aa10.08□□□□□ -0.8
HDAC6-220ENST00000477528 COX7CP15954 63 aa10.08□□□□□ -0.8
HDAC6-220ENST00000477528 C20orf197Q8N268 126 aa10.08□□□□□ -0.8
HDAC6-220ENST00000477528 Q8NAQ8 132 aa10.08□□□□□ -0.8
HDAC6-220ENST00000477528 PLAC8L1A1L4L8 177 aa10.08□□□□□ -0.8
HDAC6-220ENST00000477528 FAM218AQ96MZ4 157 aa10.08□□□□□ -0.8
HDAC6-220ENST00000477528 TNRC18O15417 2968 aaPredicted RBP10.08□□□□□ -0.8
HDAC6-220ENST00000477528 RPL37AP8A6NKH3 93 aa10.07□□□□□ -0.8
HDAC6-220ENST00000477528 CENPEQ02224 2701 aa10.07□□□□□ -0.8
HDAC6-220ENST00000477528 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.07□□□□□ -0.8
HDAC6-220ENST00000477528 PPDPFQ9H3Y8 114 aa10.07□□□□□ -0.8
HDAC6-220ENST00000477528 EYSQ5T1H1 3165 aa10.06□□□□□ -0.8
HDAC6-220ENST00000477528 H3BNG1 76 aa10.06□□□□□ -0.8
HDAC6-220ENST00000477528 Q6ZRU5 148 aa10.05□□□□□ -0.8
HDAC6-220ENST00000477528 NDUFB1O75438 58 aa10.05□□□□□ -0.8
HDAC6-220ENST00000477528 FLNAP21333 2647 aaKnown RBP10.05□□□□□ -0.8
HDAC6-220ENST00000477528 TRBV7-7A0A0K0K1E9 115 aa10.05□□□□□ -0.8
HDAC6-220ENST00000477528 C3orf84H3BNL1 204 aa10.04□□□□□ -0.8
HDAC6-220ENST00000477528 WFDC9Q8NEX5 89 aa10.04□□□□□ -0.8
HDAC6-220ENST00000477528 Q8N3U1 123 aa10.03□□□□□ -0.8
HDAC6-220ENST00000477528 LINC00846Q9NV44 126 aa10.03□□□□□ -0.8
HDAC6-220ENST00000477528 MP68P56378 58 aa10.03□□□□□ -0.8
HDAC6-220ENST00000477528 EIF4EBP3O60516 100 aaPredicted RBP10.03□□□□□ -0.8
HDAC6-220ENST00000477528 FRYQ5TBA9 3013 aa10.02□□□□□ -0.81
HDAC6-220ENST00000477528 SPEGQ15772 3267 aa10.02□□□□□ -0.81
HDAC6-220ENST00000477528 KRTAP1-1Q07627 177 aa10.02□□□□□ -0.81
HDAC6-220ENST00000477528 LINC01556Q5JQF7 62 aa10.02□□□□□ -0.81
HDAC6-220ENST00000477528 COL6A3P12111 3177 aa10.02□□□□□ -0.81
HDAC6-220ENST00000477528 FRYLO94915 3013 aa10.02□□□□□ -0.81
HDAC6-220ENST00000477528 TMEM258P61165 79 aa10.02□□□□□ -0.81
HDAC6-220ENST00000477528 ESRGQ1W209 222 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms