RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.38□□□□□ -1.39
COL6A3-210ENST00000473258 Q9BRP9 147 aa6.38□□□□□ -1.39
COL6A3-210ENST00000473258 ANAPC1Q9H1A4 1944 aa6.38□□□□□ -1.39
COL6A3-210ENST00000473258 NRXN2Q9P2S2 1712 aa6.38□□□□□ -1.39
COL6A3-210ENST00000473258 ARID2Q68CP9 1835 aa6.38□□□□□ -1.39
COL6A3-210ENST00000473258 XIRP1Q702N8 1843 aaKnown RBP6.38□□□□□ -1.39
COL6A3-210ENST00000473258 GPR179Q6PRD1 2367 aa6.37□□□□□ -1.39
COL6A3-210ENST00000473258 KIF25-AS1Q9Y6Z4 181 aa6.37□□□□□ -1.39
COL6A3-210ENST00000473258 LUZP6Q538Z0 58 aa6.37□□□□□ -1.39
COL6A3-210ENST00000473258 SONP18583 2426 aaKnown RBP6.37□□□□□ -1.39
COL6A3-210ENST00000473258 MSMPQ1L6U9 139 aa6.36□□□□□ -1.39
COL6A3-210ENST00000473258 C11orf45Q8TAV5 145 aa6.36□□□□□ -1.39
COL6A3-210ENST00000473258 PLXNA3P51805 1871 aa6.36□□□□□ -1.39
COL6A3-210ENST00000473258 IGLV5-39A0A0G2JS06 123 aa6.36□□□□□ -1.39
COL6A3-210ENST00000473258 A0A0A0MQY5 61 aa6.36□□□□□ -1.39
COL6A3-210ENST00000473258 LYPD5Q6UWN5 251 aa6.36□□□□□ -1.39
COL6A3-210ENST00000473258 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.36□□□□□ -1.39
COL6A3-210ENST00000473258 ZFP36P26651 326 aaKnown RBP6.35□□□□□ -1.39
COL6A3-210ENST00000473258 SHANK3Q9BYB0 1731 aa6.35□□□□□ -1.39
COL6A3-210ENST00000473258 C1orf134Q5TEV5 83 aa6.35□□□□□ -1.39
COL6A3-210ENST00000473258 IGKV2D-30A0A075B6S6 120 aa6.35□□□□□ -1.39
COL6A3-210ENST00000473258 IGKV2-30P06310 120 aa6.35□□□□□ -1.39
COL6A3-210ENST00000473258 EML5Q05BV3 1969 aa6.35□□□□□ -1.39
COL6A3-210ENST00000473258 REG3GQ6UW15 175 aa6.34□□□□□ -1.39
COL6A3-210ENST00000473258 USP34Q70CQ2 3546 aa6.34□□□□□ -1.39
COL6A3-210ENST00000473258 KIAA0087Q14695 138 aa6.34□□□□□ -1.4
COL6A3-210ENST00000473258 TMEM131Q92545 1883 aa6.33□□□□□ -1.4
COL6A3-210ENST00000473258 Q8NBF4 154 aa6.33□□□□□ -1.4
COL6A3-210ENST00000473258 LELP1Q5T871 98 aa6.32□□□□□ -1.4
COL6A3-210ENST00000473258 GOLGB1Q14789 3259 aaKnown RBP6.32□□□□□ -1.4
COL6A3-210ENST00000473258 TRBV7-4A0A0J9YYF1 115 aa6.32□□□□□ -1.4
COL6A3-210ENST00000473258 DEFB114Q30KQ6 69 aa6.32□□□□□ -1.4
COL6A3-210ENST00000473258 F8P00451 2351 aa6.32□□□□□ -1.4
COL6A3-210ENST00000473258 MAPK1IP1LQ8NDC0 245 aa6.32□□□□□ -1.4
COL6A3-210ENST00000473258 C7orf33Q8WU49 177 aa6.32□□□□□ -1.4
COL6A3-210ENST00000473258 C4orf3Q8WVX3 66 aa6.31□□□□□ -1.4
COL6A3-210ENST00000473258 TTC28Q96AY4 2481 aa6.31□□□□□ -1.4
COL6A3-210ENST00000473258 IGLV4-60A0A075B6I1 120 aa6.31□□□□□ -1.4
COL6A3-210ENST00000473258 PRAC1Q96KF2 57 aa6.3□□□□□ -1.4
COL6A3-210ENST00000473258 HELZP42694 1942 aaKnown RBP6.3□□□□□ -1.4
COL6A3-210ENST00000473258 PLXNA4Q9HCM2 1894 aa6.29□□□□□ -1.4
COL6A3-210ENST00000473258 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.29□□□□□ -1.4
COL6A3-210ENST00000473258 FP248Q71RG6 208 aaPredicted RBP6.29□□□□□ -1.4
COL6A3-210ENST00000473258 MYO18BQ8IUG5 2567 aa6.29□□□□□ -1.4
COL6A3-210ENST00000473258 SBF1O95248 1867 aa6.29□□□□□ -1.4
COL6A3-210ENST00000473258 COL18A1P39060 1754 aa6.29□□□□□ -1.4
COL6A3-210ENST00000473258 A8MWP4 228 aa6.28□□□□□ -1.4
COL6A3-210ENST00000473258 LCTP09848 1927 aa6.28□□□□□ -1.4
COL6A3-210ENST00000473258 ODF3BA8MYP8 253 aa6.28□□□□□ -1.4
COL6A3-210ENST00000473258 SPANXA2-OT1Q8N9U9 137 aa6.28□□□□□ -1.4
COL6A3-210ENST00000473258 PLXNA1Q9UIW2 1896 aa6.28□□□□□ -1.4
COL6A3-210ENST00000473258 IGFL3Q6UXB1 125 aa6.28□□□□□ -1.4
COL6A3-210ENST00000473258 LINC00313P59037 77 aa6.27□□□□□ -1.41
COL6A3-210ENST00000473258 C11orf71Q6IPW1 123 aa6.27□□□□□ -1.41
COL6A3-210ENST00000473258 TET2Q6N021 2002 aaPredicted RBP6.27□□□□□ -1.41
COL6A3-210ENST00000473258 J3QL48 77 aa6.27□□□□□ -1.41
COL6A3-210ENST00000473258 LINC00588Q9Y4M8 146 aa6.27□□□□□ -1.41
COL6A3-210ENST00000473258 WDR90Q96KV7 1748 aa6.27□□□□□ -1.41
COL6A3-210ENST00000473258 NUPR2A6NF83 97 aa6.27□□□□□ -1.41
COL6A3-210ENST00000473258 Q75L30 129 aa6.26□□□□□ -1.41
COL6A3-210ENST00000473258 CIRBP-AS1Q8TBR5 109 aa6.26□□□□□ -1.41
COL6A3-210ENST00000473258 DSCAMO60469 2012 aa6.26□□□□□ -1.41
COL6A3-210ENST00000473258 IGLV5-45A0A087WSX0 123 aa6.25□□□□□ -1.41
COL6A3-210ENST00000473258 UTRNP46939 3433 aa6.25□□□□□ -1.41
COL6A3-210ENST00000473258 K7EQZ3 153 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 DAZAP2Q15038 168 aaPredicted RBP6.24□□□□□ -1.41
COL6A3-210ENST00000473258 ALPK3Q96L96 1907 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 RIF1Q5UIP0 2472 aaKnown RBP6.24□□□□□ -1.41
COL6A3-210ENST00000473258 KRTAP16-1A8MUX0 517 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 PLA2G2CQ5R387 149 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 PTPN13Q12923 2485 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 TANC1Q9C0D5 1861 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 CACNA1AO00555 2505 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 EPM2AB3EWF7 344 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 LY6G6CO95867 125 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 MOBPQ13875 183 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 LITAFQ99732 161 aa6.24□□□□□ -1.41
COL6A3-210ENST00000473258 COL5A3P25940 1745 aaPredicted RBP6.23□□□□□ -1.41
COL6A3-210ENST00000473258 A0A1B0GUV1 79 aa6.23□□□□□ -1.41
COL6A3-210ENST00000473258 PLXNA2O75051 1894 aa6.23□□□□□ -1.41
COL6A3-210ENST00000473258 PLXNB2O15031 1838 aa6.23□□□□□ -1.41
COL6A3-210ENST00000473258 DEFB131BA0A096LNP1 70 aa6.23□□□□□ -1.41
COL6A3-210ENST00000473258 NOTCH4Q99466 2003 aa6.23□□□□□ -1.41
COL6A3-210ENST00000473258 IGHV3OR16-9A0A0B4J2B5 98 aa6.22□□□□□ -1.41
COL6A3-210ENST00000473258 TCF20Q9UGU0 1960 aaKnown RBP6.22□□□□□ -1.41
COL6A3-210ENST00000473258 C9orf129Q5T035 196 aaKnown RBP6.21□□□□□ -1.41
COL6A3-210ENST00000473258 ADAMTSL1Q8N6G6 1762 aa6.21□□□□□ -1.41
COL6A3-210ENST00000473258 DMAC1Q96GE9 116 aa6.21□□□□□ -1.42
COL6A3-210ENST00000473258 ADAMTS9Q9P2N4 1935 aa6.21□□□□□ -1.42
COL6A3-210ENST00000473258 C16orf90A8MZG2 172 aa6.21□□□□□ -1.42
COL6A3-210ENST00000473258 RPL37AP61513 92 aaKnown RBP6.2□□□□□ -1.42
COL6A3-210ENST00000473258 LINC00476Q8WZB0 136 aa6.2□□□□□ -1.42
COL6A3-210ENST00000473258 CSAG1Q6PB30 78 aa6.2□□□□□ -1.42
COL6A3-210ENST00000473258 HIVEP3Q5T1R4 2406 aa6.19□□□□□ -1.42
COL6A3-210ENST00000473258 MYO9AB2RTY4 2548 aa6.19□□□□□ -1.42
COL6A3-210ENST00000473258 ZSWIM8A7E2V4 1837 aa6.19□□□□□ -1.42
COL6A3-210ENST00000473258 BRWD3Q6RI45 1802 aa6.19□□□□□ -1.42
COL6A3-210ENST00000473258 APLNQ9ULZ1 77 aa6.19□□□□□ -1.42
COL6A3-210ENST00000473258 ANKHD1Q8IWZ3 2542 aaKnown RBP6.19□□□□□ -1.42
COL6A3-210ENST00000473258 LY6G6EA0A0G2JKS1 128 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms