RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C6orf226Q5I0X4 101 aa13.18□□□□□ -0.3
VIM-203ENST00000469543 TRAV26-1A0A087WT03 109 aa13.18□□□□□ -0.3
VIM-203ENST00000469543 TRAV8-4A0A0B4J246 113 aa13.18□□□□□ -0.3
VIM-203ENST00000469543 CCL18P55774 89 aa13.17□□□□□ -0.3
VIM-203ENST00000469543 M0QXV9 152 aa13.17□□□□□ -0.3
VIM-203ENST00000469543 MAST4O15021 2626 aa13.17□□□□□ -0.3
VIM-203ENST00000469543 COX7A2LO14548 114 aa13.16□□□□□ -0.3
VIM-203ENST00000469543 Q9HAA7 133 aa13.16□□□□□ -0.3
VIM-203ENST00000469543 SMIM9A6NGZ8 99 aa13.15□□□□□ -0.31
VIM-203ENST00000469543 PRR3P79522 188 aaKnown RBP13.14□□□□□ -0.31
VIM-203ENST00000469543 DAD1P61803 113 aa13.14□□□□□ -0.31
VIM-203ENST00000469543 CITED1Q99966 193 aa13.13□□□□□ -0.31
VIM-203ENST00000469543 A0A1B0GUV1 79 aa13.13□□□□□ -0.31
VIM-203ENST00000469543 ANGP03950 147 aaKnown RBP13.13□□□□□ -0.31
VIM-203ENST00000469543 H3BT86 120 aa13.12□□□□□ -0.31
VIM-203ENST00000469543 SCGB1A1P11684 91 aa13.12□□□□□ -0.31
VIM-203ENST00000469543 SS18Q15532 418 aa13.12□□□□□ -0.31
VIM-203ENST00000469543 C9orf116Q5BN46 136 aaPredicted RBP13.12□□□□□ -0.31
VIM-203ENST00000469543 Q8NAQ8 132 aa13.12□□□□□ -0.31
VIM-203ENST00000469543 CRPP02741 224 aa13.11□□□□□ -0.31
VIM-203ENST00000469543 SMIM11BQ8TCY0 68 aa13.11□□□□□ -0.31
VIM-203ENST00000469543 COPS9Q8WXC6 57 aa13.11□□□□□ -0.31
VIM-203ENST00000469543 LINC00526Q96FQ7 95 aa13.11□□□□□ -0.31
VIM-203ENST00000469543 LINC01600Q96MT4 127 aa13.11□□□□□ -0.31
VIM-203ENST00000469543 LYRM9A8MSI8 78 aa13.11□□□□□ -0.31
VIM-203ENST00000469543 IGHV4-30-4P0DP06 118 aa13.11□□□□□ -0.31
VIM-203ENST00000469543 ATP5G1P05496 136 aa13.1□□□□□ -0.31
VIM-203ENST00000469543 OXLD1Q5BKU9 147 aa13.09□□□□□ -0.31
VIM-203ENST00000469543 C22orf24Q9Y442 160 aa13.09□□□□□ -0.31
VIM-203ENST00000469543 IBA57-AS1B1ANH7 110 aa13.09□□□□□ -0.31
VIM-203ENST00000469543 APOC4P55056 127 aa13.09□□□□□ -0.31
VIM-203ENST00000469543 OR13C6PQ8NH95 151 aa13.09□□□□□ -0.31
VIM-203ENST00000469543 A0A087WYN8 130 aa13.08□□□□□ -0.31
VIM-203ENST00000469543 CKS1BP61024 79 aa13.08□□□□□ -0.31
VIM-203ENST00000469543 CHCHD10Q8WYQ3 142 aaPredicted RBP13.08□□□□□ -0.32
VIM-203ENST00000469543 BAALC-AS2P0C853 105 aa13.07□□□□□ -0.32
VIM-203ENST00000469543 REG3AQ06141 175 aa13.07□□□□□ -0.32
VIM-203ENST00000469543 TRAV13-2A0A0B4J235 113 aa13.07□□□□□ -0.32
VIM-203ENST00000469543 TTC32Q5I0X7 151 aa13.07□□□□□ -0.32
VIM-203ENST00000469543 RPL28P46779 137 aaKnown RBP13.06□□□□□ -0.32
VIM-203ENST00000469543 C9orf129Q5T035 196 aaKnown RBP13.05□□□□□ -0.32
VIM-203ENST00000469543 RETNQ9HD89 108 aa13.05□□□□□ -0.32
VIM-203ENST00000469543 C15orf53Q8NAA6 179 aa13.05□□□□□ -0.32
VIM-203ENST00000469543 KIAA0087Q14695 138 aa13.04□□□□□ -0.32
VIM-203ENST00000469543 C6orf223Q8N319 242 aa13.04□□□□□ -0.32
VIM-203ENST00000469543 COL6A5A8TX70 2615 aa13.04□□□□□ -0.32
VIM-203ENST00000469543 A0A1B0GV72 72 aa13.03□□□□□ -0.32
VIM-203ENST00000469543 Q8IZM0 81 aa13.03□□□□□ -0.32
VIM-203ENST00000469543 SNCGO76070 127 aa13.02□□□□□ -0.32
VIM-203ENST00000469543 MALP21145 153 aa13.02□□□□□ -0.32
VIM-203ENST00000469543 CD164L2Q6UWJ8 174 aa13.02□□□□□ -0.32
VIM-203ENST00000469543 NBEAL1Q6ZS30 2694 aa13.02□□□□□ -0.33
VIM-203ENST00000469543 SLPIP03973 132 aa13.02□□□□□ -0.33
VIM-203ENST00000469543 SPART-AS1P0CW21 52 aa13.01□□□□□ -0.33
VIM-203ENST00000469543 Q8NDZ9 215 aa13.01□□□□□ -0.33
VIM-203ENST00000469543 WFDC9Q8NEX5 89 aa13.01□□□□□ -0.33
VIM-203ENST00000469543 KLK12Q9UKR0 248 aa13.01□□□□□ -0.33
VIM-203ENST00000469543 TRACP01848 142 aa13.01□□□□□ -0.33
VIM-203ENST00000469543 MIFP14174 115 aa13.01□□□□□ -0.33
VIM-203ENST00000469543 C10orf25Q5T742 122 aa13.01□□□□□ -0.33
VIM-203ENST00000469543 DEFB121Q5J5C9 76 aa12.99□□□□□ -0.33
VIM-203ENST00000469543 KRTAP10-11P60412 298 aa12.98□□□□□ -0.33
VIM-203ENST00000469543 LECT2O14960 151 aa12.98□□□□□ -0.33
VIM-203ENST00000469543 GAGE2BQ13066 116 aa12.97□□□□□ -0.33
VIM-203ENST00000469543 MRPL23Q16540 153 aaKnown RBP12.97□□□□□ -0.33
VIM-203ENST00000469543 GAGE2EQ4V326 116 aa12.97□□□□□ -0.33
VIM-203ENST00000469543 UNQ6190/PRO20217Q6UXQ8 127 aa12.97□□□□□ -0.33
VIM-203ENST00000469543 GAGE2DQ9UEU5 116 aa12.97□□□□□ -0.33
VIM-203ENST00000469543 PPDPFQ9H3Y8 114 aa12.96□□□□□ -0.33
VIM-203ENST00000469543 CFAP161Q6P656 301 aa12.96□□□□□ -0.33
VIM-203ENST00000469543 SMCR5Q8TEV8 140 aa12.95□□□□□ -0.34
VIM-203ENST00000469543 NANOS2P60321 138 aaKnown RBP12.95□□□□□ -0.34
VIM-203ENST00000469543 ENHOQ6UWT2 76 aa12.94□□□□□ -0.34
VIM-203ENST00000469543 DNAL4O96015 105 aa12.93□□□□□ -0.34
VIM-203ENST00000469543 LYPD5Q6UWN5 251 aa12.93□□□□□ -0.34
VIM-203ENST00000469543 NCR3O14931 201 aa12.92□□□□□ -0.34
VIM-203ENST00000469543 LELP1Q5T871 98 aa12.92□□□□□ -0.34
VIM-203ENST00000469543 NHLRC4P0CG21 123 aaPredicted RBP12.92□□□□□ -0.34
VIM-203ENST00000469543 CMYA5Q8N3K9 4069 aa12.91□□□□□ -0.34
VIM-203ENST00000469543 ANAPC13Q9BS18 74 aa12.91□□□□□ -0.34
VIM-203ENST00000469543 C14orf132Q9NPU4 83 aa12.91□□□□□ -0.34
VIM-203ENST00000469543 CYSRT1A8MQ03 144 aa12.9□□□□□ -0.34
VIM-203ENST00000469543 GAGE2AQ6NT46 116 aa12.9□□□□□ -0.34
VIM-203ENST00000469543 WFDC10BQ8IUB3 73 aa12.9□□□□□ -0.34
VIM-203ENST00000469543 Q6ZTC4 211 aa12.9□□□□□ -0.34
VIM-203ENST00000469543 FAM240AA0A1B0GVK7 77 aa12.89□□□□□ -0.35
VIM-203ENST00000469543 SPAG11BQ08648 103 aa12.89□□□□□ -0.35
VIM-203ENST00000469543 H0YGX0 51 aa12.88□□□□□ -0.35
VIM-203ENST00000469543 WIPF1O43516 503 aa12.87□□□□□ -0.35
VIM-203ENST00000469543 NDUFV3P56181 108 aaKnown RBP12.87□□□□□ -0.35
VIM-203ENST00000469543 KRTAP24-1Q3LI83 254 aa12.87□□□□□ -0.35
VIM-203ENST00000469543 PRR34Q9NV39 138 aa12.86□□□□□ -0.35
VIM-203ENST00000469543 KPRPQ5T749 579 aaPredicted RBP12.86□□□□□ -0.35
VIM-203ENST00000469543 LINC01561Q8N1V8 128 aa12.85□□□□□ -0.35
VIM-203ENST00000469543 XAGE1AQ9HD64 81 aa12.85□□□□□ -0.35
VIM-203ENST00000469543 COX17Q14061 63 aa12.84□□□□□ -0.35
VIM-203ENST00000469543 HIGD2BQ4VC39 106 aa12.84□□□□□ -0.35
VIM-203ENST00000469543 C6orf99Q4VX62 202 aa12.84□□□□□ -0.35
VIM-203ENST00000469543 PRB2P02812 416 aaPredicted RBP12.83□□□□□ -0.36
VIM-203ENST00000469543 KLK5Q9Y337 293 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms