RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 PAX4O43316 350 aa12.72□□□□□ -0.37
SYNE4-204ENST00000465425 C9orf66Q5T8R8 295 aa12.72□□□□□ -0.37
SYNE4-204ENST00000465425 FASNP49327 2511 aaKnown RBP12.72□□□□□ -0.37
SYNE4-204ENST00000465425 LYRM9A8MSI8 78 aa12.71□□□□□ -0.37
SYNE4-204ENST00000465425 LY6G6DO95868 133 aa12.71□□□□□ -0.38
SYNE4-204ENST00000465425 DNAL4O96015 105 aa12.71□□□□□ -0.38
SYNE4-204ENST00000465425 ACYP1P07311 99 aa12.71□□□□□ -0.38
SYNE4-204ENST00000465425 SMIM11BQ8TCY0 68 aa12.71□□□□□ -0.38
SYNE4-204ENST00000465425 TRAV26-1A0A087WT03 109 aa12.7□□□□□ -0.38
SYNE4-204ENST00000465425 NBEAL2Q6ZNJ1 2754 aa12.7□□□□□ -0.38
SYNE4-204ENST00000465425 DEFB135Q30KP9 77 aa12.7□□□□□ -0.38
SYNE4-204ENST00000465425 Q9HAA7 133 aa12.7□□□□□ -0.38
SYNE4-204ENST00000465425 NDUFV3P56181 108 aaKnown RBP12.69□□□□□ -0.38
SYNE4-204ENST00000465425 Q8IZM0 81 aa12.69□□□□□ -0.38
SYNE4-204ENST00000465425 OR13C6PQ8NH95 151 aa12.68□□□□□ -0.38
SYNE4-204ENST00000465425 DEFB4AO15263 64 aa12.68□□□□□ -0.38
SYNE4-204ENST00000465425 KMT2BQ9UMN6 2715 aaPredicted RBP12.68□□□□□ -0.38
SYNE4-204ENST00000465425 H0YGX0 51 aa12.67□□□□□ -0.38
SYNE4-204ENST00000465425 MALP21145 153 aa12.66□□□□□ -0.38
SYNE4-204ENST00000465425 APOC4P55056 127 aa12.66□□□□□ -0.38
SYNE4-204ENST00000465425 SPATA3Q8NHX4 192 aa12.66□□□□□ -0.38
SYNE4-204ENST00000465425 INAFM2P0DMQ5 153 aa12.66□□□□□ -0.38
SYNE4-204ENST00000465425 LINC00269Q8N2A0 174 aa12.66□□□□□ -0.38
SYNE4-204ENST00000465425 A0A087WYN8 130 aa12.65□□□□□ -0.38
SYNE4-204ENST00000465425 DAD1P61803 113 aa12.65□□□□□ -0.39
SYNE4-204ENST00000465425 LINC01561Q8N1V8 128 aa12.65□□□□□ -0.39
SYNE4-204ENST00000465425 VWFP04275 2813 aa12.64□□□□□ -0.39
SYNE4-204ENST00000465425 ANGP03950 147 aaKnown RBP12.63□□□□□ -0.39
SYNE4-204ENST00000465425 C22orf24Q9Y442 160 aa12.63□□□□□ -0.39
SYNE4-204ENST00000465425 IGHV4-28A0A0C4DH34 117 aa12.63□□□□□ -0.39
SYNE4-204ENST00000465425 CD164L2Q6UWJ8 174 aa12.63□□□□□ -0.39
SYNE4-204ENST00000465425 INAFM1C9JVW0 142 aa12.62□□□□□ -0.39
SYNE4-204ENST00000465425 NHLRC4P0CG21 123 aaPredicted RBP12.62□□□□□ -0.39
SYNE4-204ENST00000465425 CFAP161Q6P656 301 aa12.62□□□□□ -0.39
SYNE4-204ENST00000465425 IGLV10-54A0A075B6I4 117 aa12.61□□□□□ -0.39
SYNE4-204ENST00000465425 CHCHD10Q8WYQ3 142 aaPredicted RBP12.61□□□□□ -0.39
SYNE4-204ENST00000465425 ATP5G1P05496 136 aa12.61□□□□□ -0.39
SYNE4-204ENST00000465425 REG3AQ06141 175 aa12.61□□□□□ -0.39
SYNE4-204ENST00000465425 LECT2O14960 151 aa12.6□□□□□ -0.39
SYNE4-204ENST00000465425 TRBV7-7A0A0K0K1E9 115 aa12.6□□□□□ -0.39
SYNE4-204ENST00000465425 CXCL5P42830 114 aa12.6□□□□□ -0.39
SYNE4-204ENST00000465425 GAGE2AQ6NT46 116 aa12.59□□□□□ -0.39
SYNE4-204ENST00000465425 NOTCH2Q04721 2471 aa12.59□□□□□ -0.39
SYNE4-204ENST00000465425 Q8N3U1 123 aa12.58□□□□□ -0.4
SYNE4-204ENST00000465425 MIFP14174 115 aa12.57□□□□□ -0.4
SYNE4-204ENST00000465425 COX17Q14061 63 aa12.57□□□□□ -0.4
SYNE4-204ENST00000465425 LINC00643Q86TS7 51 aa12.57□□□□□ -0.4
SYNE4-204ENST00000465425 KIAA0087Q14695 138 aa12.57□□□□□ -0.4
SYNE4-204ENST00000465425 SMCR5Q8TEV8 140 aa12.57□□□□□ -0.4
SYNE4-204ENST00000465425 CELA1Q9UNI1 258 aa12.57□□□□□ -0.4
SYNE4-204ENST00000465425 HECTD1Q9ULT8 2610 aa12.56□□□□□ -0.4
SYNE4-204ENST00000465425 HTN3P15516 51 aa12.56□□□□□ -0.4
SYNE4-204ENST00000465425 Q8NAQ8 132 aa12.56□□□□□ -0.4
SYNE4-204ENST00000465425 IMUPQ9GZP8 106 aa12.55□□□□□ -0.4
SYNE4-204ENST00000465425 SPART-AS1P0CW21 52 aa12.55□□□□□ -0.4
SYNE4-204ENST00000465425 OTOGQ6ZRI0 2925 aa12.54□□□□□ -0.4
SYNE4-204ENST00000465425 NDUFC2O95298 119 aa12.53□□□□□ -0.4
SYNE4-204ENST00000465425 PRR3P79522 188 aaKnown RBP12.53□□□□□ -0.4
SYNE4-204ENST00000465425 C14orf132Q9NPU4 83 aa12.53□□□□□ -0.4
SYNE4-204ENST00000465425 SDIM1Q6ZPB5 146 aa12.52□□□□□ -0.41
SYNE4-204ENST00000465425 ORMDL1Q9P0S3 153 aa12.52□□□□□ -0.41
SYNE4-204ENST00000465425 B5MCH6 92 aa12.51□□□□□ -0.41
SYNE4-204ENST00000465425 SLPIP03973 132 aa12.51□□□□□ -0.41
SYNE4-204ENST00000465425 C9orf116Q5BN46 136 aaPredicted RBP12.51□□□□□ -0.41
SYNE4-204ENST00000465425 TMEM126AQ9H061 195 aa12.51□□□□□ -0.41
SYNE4-204ENST00000465425 C9orf129Q5T035 196 aaKnown RBP12.51□□□□□ -0.41
SYNE4-204ENST00000465425 LELP1Q5T871 98 aa12.51□□□□□ -0.41
SYNE4-204ENST00000465425 TENM1Q9UKZ4 2725 aa12.51□□□□□ -0.41
SYNE4-204ENST00000465425 NSD1Q96L73 2696 aaPredicted RBP12.51□□□□□ -0.41
SYNE4-204ENST00000465425 CCDC179H3BU77 68 aa12.5□□□□□ -0.41
SYNE4-204ENST00000465425 FAM236AA0A1B0GUQ0 79 aa12.49□□□□□ -0.41
SYNE4-204ENST00000465425 FAM236BA0A1B0GV22 79 aa12.49□□□□□ -0.41
SYNE4-204ENST00000465425 IGHV4-30-4P0DP06 118 aa12.49□□□□□ -0.41
SYNE4-204ENST00000465425 OBSCN-AS1Q96MR7 158 aa12.49□□□□□ -0.41
SYNE4-204ENST00000465425 NCR3O14931 201 aa12.48□□□□□ -0.41
SYNE4-204ENST00000465425 NANOS2P60321 138 aaKnown RBP12.48□□□□□ -0.41
SYNE4-204ENST00000465425 SPAG11BQ08648 103 aa12.48□□□□□ -0.41
SYNE4-204ENST00000465425 KLK5Q9Y337 293 aaPredicted RBP12.48□□□□□ -0.41
SYNE4-204ENST00000465425 A0A1B0GX51 115 aa12.47□□□□□ -0.41
SYNE4-204ENST00000465425 KLK12Q9UKR0 248 aa12.46□□□□□ -0.41
SYNE4-204ENST00000465425 S100A7L2Q5SY68 101 aa12.45□□□□□ -0.42
SYNE4-204ENST00000465425 Q8N814 137 aa12.45□□□□□ -0.42
SYNE4-204ENST00000465425 C6orf223Q8N319 242 aa12.45□□□□□ -0.42
SYNE4-204ENST00000465425 ATRQ13535 2644 aa12.44□□□□□ -0.42
SYNE4-204ENST00000465425 UNQ6190/PRO20217Q6UXQ8 127 aa12.44□□□□□ -0.42
SYNE4-204ENST00000465425 WFDC9Q8NEX5 89 aa12.44□□□□□ -0.42
SYNE4-204ENST00000465425 C10orf25Q5T742 122 aa12.43□□□□□ -0.42
SYNE4-204ENST00000465425 PRR34Q9NV39 138 aa12.43□□□□□ -0.42
SYNE4-204ENST00000465425 SS18L2Q9UHA2 77 aa12.43□□□□□ -0.42
SYNE4-204ENST00000465425 TRRAPQ9Y4A5 3859 aa12.43□□□□□ -0.42
SYNE4-204ENST00000465425 MUC7Q8TAX7 377 aa12.43□□□□□ -0.42
SYNE4-204ENST00000465425 LINC00526Q96FQ7 95 aa12.43□□□□□ -0.42
SYNE4-204ENST00000465425 LINC00167Q96N53 147 aa12.43□□□□□ -0.42
SYNE4-204ENST00000465425 CYSRT1A8MQ03 144 aa12.42□□□□□ -0.42
SYNE4-204ENST00000465425 C6orf99Q4VX62 202 aa12.42□□□□□ -0.42
SYNE4-204ENST00000465425 TMEM256-PLSCR3K7ERE1 68 aa12.42□□□□□ -0.42
SYNE4-204ENST00000465425 TEP1Q99973 2627 aaKnown RBP12.41□□□□□ -0.42
SYNE4-204ENST00000465425 Q8NDZ9 215 aa12.4□□□□□ -0.42
SYNE4-204ENST00000465425 A0A0J9YWU9 116 aa12.4□□□□□ -0.42
SYNE4-204ENST00000465425 JMJD7-PLA2G4BH0Y9G9 81 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms