RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 LRRIQ1Q96JM4 1722 aa1.63□□□□□ -2.15
PTCD3-205ENST00000464541 NDUFB1O75438 58 aa1.63□□□□□ -2.15
PTCD3-205ENST00000464541 IFI27P40305 119 aaPredicted RBP1.63□□□□□ -2.15
PTCD3-205ENST00000464541 SCN7AQ01118 1682 aa1.63□□□□□ -2.15
PTCD3-205ENST00000464541 ADAMTS12P58397 1594 aa1.63□□□□□ -2.15
PTCD3-205ENST00000464541 FLG2Q5D862 2391 aaPredicted RBP1.63□□□□□ -2.15
PTCD3-205ENST00000464541 NKTRP30414 1462 aaKnown RBP1.63□□□□□ -2.15
PTCD3-205ENST00000464541 TECTAO75443 2155 aa1.62□□□□□ -2.15
PTCD3-205ENST00000464541 UBR1Q8IWV7 1749 aa1.62□□□□□ -2.15
PTCD3-205ENST00000464541 SCN11AQ9UI33 1791 aa1.62□□□□□ -2.15
PTCD3-205ENST00000464541 ABCA1O95477 2261 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 MYO7BQ6PIF6 2116 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 LAMA4Q16363 1823 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 HFM1A2PYH4 1435 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 LYNX1P0DP58 116 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 UBE2DNLQ8IWF7 75 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 PLAC8Q9NZF1 115 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 RGPD8O14715 1765 aaPredicted RBP1.61□□□□□ -2.15
PTCD3-205ENST00000464541 RGPD5Q99666 1765 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 C1orf167Q5SNV9 1468 aa1.61□□□□□ -2.15
PTCD3-205ENST00000464541 URB2Q14146 1524 aaKnown RBP1.61□□□□□ -2.15
PTCD3-205ENST00000464541 A0A087WWC5 75 aa1.6□□□□□ -2.15
PTCD3-205ENST00000464541 G3V318 75 aa1.6□□□□□ -2.15
PTCD3-205ENST00000464541 ATP7BP35670 1465 aa1.6□□□□□ -2.15
PTCD3-205ENST00000464541 ZC3H13Q5T200 1668 aaKnown RBP1.6□□□□□ -2.15
PTCD3-205ENST00000464541 ZNF236Q9UL36 1845 aa1.59□□□□□ -2.15
PTCD3-205ENST00000464541 NUP188Q5SRE5 1749 aa1.59□□□□□ -2.16
PTCD3-205ENST00000464541 TRBV7-4A0A0J9YYF1 115 aa1.58□□□□□ -2.16
PTCD3-205ENST00000464541 A0A1B0GU69 56 aa1.58□□□□□ -2.16
PTCD3-205ENST00000464541 K7EIL1 84 aa1.58□□□□□ -2.16
PTCD3-205ENST00000464541 SPINK7P58062 85 aa1.58□□□□□ -2.16
PTCD3-205ENST00000464541 MAP2P11137 1827 aaKnown RBP1.58□□□□□ -2.16
PTCD3-205ENST00000464541 DNAJC13O75165 2243 aa1.58□□□□□ -2.16
PTCD3-205ENST00000464541 F5P12259 2224 aa1.58□□□□□ -2.16
PTCD3-205ENST00000464541 PPRC1Q5VV67 1664 aaKnown RBP1.58□□□□□ -2.16
PTCD3-205ENST00000464541 KNDC1Q76NI1 1749 aa1.57□□□□□ -2.16
PTCD3-205ENST00000464541 MAGI3Q5TCQ9 1506 aa1.57□□□□□ -2.16
PTCD3-205ENST00000464541 SETBP1Q9Y6X0 1596 aa1.57□□□□□ -2.16
PTCD3-205ENST00000464541 H3BVH4 76 aa1.57□□□□□ -2.16
PTCD3-205ENST00000464541 MYO5CQ9NQX4 1742 aa1.57□□□□□ -2.16
PTCD3-205ENST00000464541 CRYBG1Q9Y4K1 1723 aa1.57□□□□□ -2.16
PTCD3-205ENST00000464541 EFCAB5A4FU69 1503 aa1.56□□□□□ -2.16
PTCD3-205ENST00000464541 SSC5DA1L4H1 1573 aa1.56□□□□□ -2.16
PTCD3-205ENST00000464541 TMEM131LA2VDJ0 1609 aa1.56□□□□□ -2.16
PTCD3-205ENST00000464541 IQGAP3Q86VI3 1631 aa1.56□□□□□ -2.16
PTCD3-205ENST00000464541 SHPRHQ149N8 1683 aa1.56□□□□□ -2.16
PTCD3-205ENST00000464541 COX8AP10176 69 aa1.56□□□□□ -2.16
PTCD3-205ENST00000464541 DEFB112Q30KQ8 113 aa1.56□□□□□ -2.16
PTCD3-205ENST00000464541 MROH1Q8NDA8 1641 aa1.55□□□□□ -2.16
PTCD3-205ENST00000464541 LTN1O94822 1766 aa1.55□□□□□ -2.16
PTCD3-205ENST00000464541 RGPD2P0DJD1 1756 aa1.55□□□□□ -2.16
PTCD3-205ENST00000464541 HMGA1P17096 107 aaKnown RBP1.55□□□□□ -2.16
PTCD3-205ENST00000464541 SSBP3-AS1Q7Z2R9 100 aa1.55□□□□□ -2.16
PTCD3-205ENST00000464541 GNG13Q9P2W3 67 aa1.55□□□□□ -2.16
PTCD3-205ENST00000464541 MYO7AQ13402 2215 aa1.55□□□□□ -2.16
PTCD3-205ENST00000464541 SAMD9Q5K651 1589 aa1.55□□□□□ -2.16
PTCD3-205ENST00000464541 C5P01031 1676 aa1.55□□□□□ -2.16
PTCD3-205ENST00000464541 SPINK9Q5DT21 86 aa1.54□□□□□ -2.16
PTCD3-205ENST00000464541 WFDC9Q8NEX5 89 aa1.54□□□□□ -2.16
PTCD3-205ENST00000464541 GAFA1Q96PS6 74 aa1.54□□□□□ -2.16
PTCD3-205ENST00000464541 ERCC6L2Q5T890 1561 aa1.54□□□□□ -2.16
PTCD3-205ENST00000464541 INO80Q9ULG1 1556 aaPredicted RBP1.54□□□□□ -2.16
PTCD3-205ENST00000464541 TRAV21A0A0B4J279 112 aa1.53□□□□□ -2.16
PTCD3-205ENST00000464541 A0A0D9SFI3 127 aa1.53□□□□□ -2.16
PTCD3-205ENST00000464541 ATXN8Q156A1 80 aa1.53□□□□□ -2.16
PTCD3-205ENST00000464541 ALKQ9UM73 1620 aa1.53□□□□□ -2.16
PTCD3-205ENST00000464541 TARBP1Q13395 1621 aaKnown RBP1.52□□□□□ -2.17
PTCD3-205ENST00000464541 RPL38P63173 70 aaKnown RBP1.52□□□□□ -2.17
PTCD3-205ENST00000464541 SMIM5Q71RC9 77 aa1.52□□□□□ -2.17
PTCD3-205ENST00000464541 KNTC1P50748 2209 aa1.52□□□□□ -2.17
PTCD3-205ENST00000464541 XRN1Q8IZH2 1706 aaKnown RBP1.52□□□□□ -2.17
PTCD3-205ENST00000464541 ZFHX3Q15911 3703 aa1.51□□□□□ -2.17
PTCD3-205ENST00000464541 CNTRLQ7Z7A1 2325 aa1.51□□□□□ -2.17
PTCD3-205ENST00000464541 ANKRD50Q9ULJ7 1429 aa1.5□□□□□ -2.17
PTCD3-205ENST00000464541 A0A0G2JMZ2 1700 aa1.5□□□□□ -2.17
PTCD3-205ENST00000464541 IFI6P09912 130 aa1.5□□□□□ -2.17
PTCD3-205ENST00000464541 HILPDAQ9Y5L2 63 aa1.5□□□□□ -2.17
PTCD3-205ENST00000464541 PIK3C2BO00750 1634 aa1.5□□□□□ -2.17
PTCD3-205ENST00000464541 ZDBF2Q9HCK1 2354 aa1.49□□□□□ -2.17
PTCD3-205ENST00000464541 LRP6O75581 1613 aa1.49□□□□□ -2.17
PTCD3-205ENST00000464541 SFTA3P0C7M3 94 aa1.49□□□□□ -2.17
PTCD3-205ENST00000464541 NREPQ16612 68 aa1.49□□□□□ -2.17
PTCD3-205ENST00000464541 ASXL1Q8IXJ9 1541 aa1.49□□□□□ -2.17
PTCD3-205ENST00000464541 KIAA0556O60303 1618 aa1.48□□□□□ -2.17
PTCD3-205ENST00000464541 COX7BP24311 80 aa1.48□□□□□ -2.17
PTCD3-205ENST00000464541 PIGYQ3MUY2 71 aa1.48□□□□□ -2.17
PTCD3-205ENST00000464541 LRRC7Q96NW7 1537 aa1.48□□□□□ -2.17
PTCD3-205ENST00000464541 KDM3BQ7LBC6 1761 aa1.48□□□□□ -2.17
PTCD3-205ENST00000464541 CACNA1CQ13936 2221 aa1.48□□□□□ -2.17
PTCD3-205ENST00000464541 PKD1L3Q7Z443 1732 aa1.48□□□□□ -2.17
PTCD3-205ENST00000464541 MADDQ8WXG6 1647 aa1.48□□□□□ -2.17
PTCD3-205ENST00000464541 LINC00959A0A1B0GUT2 108 aa1.47□□□□□ -2.17
PTCD3-205ENST00000464541 KRTAP10-4P60372 401 aaPredicted RBP1.47□□□□□ -2.17
PTCD3-205ENST00000464541 CD163L1Q9NR16 1453 aa1.47□□□□□ -2.17
PTCD3-205ENST00000464541 CADP27708 2225 aa1.47□□□□□ -2.17
PTCD3-205ENST00000464541 CEP170BQ9Y4F5 1589 aaPredicted RBP1.47□□□□□ -2.17
PTCD3-205ENST00000464541 ANKRD36A6QL64 1941 aa1.46□□□□□ -2.18
PTCD3-205ENST00000464541 ASXL3Q9C0F0 2248 aa1.46□□□□□ -2.18
PTCD3-205ENST00000464541 SPTY2D1-AS1A0A0U1RR47 76 aa1.46□□□□□ -2.18
PTCD3-205ENST00000464541 C3orf79P0CE67 100 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms