RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 CLTCQ00610 1675 aaKnown RBP0.47□□□□□ -2.33
CLK1-208ENST00000464454 SHPRHQ149N8 1683 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 TRBV6-1A0A0K0K1D8 114 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 SSBP3-AS1Q7Z2R9 100 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 S100A13Q99584 98 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 SPCS1Q9Y6A9 102 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 CADP27708 2225 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 CACNA1CQ13936 2221 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 SAMD9Q5K651 1589 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 PLXNB2O15031 1838 aa0.47□□□□□ -2.33
CLK1-208ENST00000464454 MAP3K4Q9Y6R4 1608 aa0.46□□□□□ -2.34
CLK1-208ENST00000464454 AHNAKQ09666 5890 aaKnown RBP0.46□□□□□ -2.34
CLK1-208ENST00000464454 A0A0D9SFI3 127 aa0.46□□□□□ -2.34
CLK1-208ENST00000464454 MYMXA0A1B0GTQ4 84 aa0.46□□□□□ -2.34
CLK1-208ENST00000464454 IQCF6A8MYZ5 107 aa0.46□□□□□ -2.34
CLK1-208ENST00000464454 H0Y9P7 68 aa0.46□□□□□ -2.34
CLK1-208ENST00000464454 SLIT1O75093 1534 aa0.46□□□□□ -2.34
CLK1-208ENST00000464454 ATP7BP35670 1465 aa0.46□□□□□ -2.34
CLK1-208ENST00000464454 KIF14Q15058 1648 aa0.46□□□□□ -2.34
CLK1-208ENST00000464454 DIP2BQ9P265 1576 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 FAM208BQ5VWN6 2430 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 UBR1Q8IWV7 1749 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 LINC00959A0A1B0GUT2 108 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 KANTRA0A1W2PQU2 76 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 D6R8Y8 96 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 KRTAP2-3P0C7H8 128 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 IGLC2P0DOY2 106 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 HAMPP81172 84 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 BVES-AS1Q5T3Y7 98 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 C6orf201Q7Z4U5 140 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 MUSTN1Q8IVN3 82 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 KRTAP2-4Q9BYR9 128 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 KRTAP2-1Q9BYU5 128 aa0.45□□□□□ -2.34
CLK1-208ENST00000464454 NUP188Q5SRE5 1749 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 DCAF1Q9Y4B6 1507 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 DNAJC13O75165 2243 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 BTAF1O14981 1849 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 WNK3Q9BYP7 1800 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 TRBV7-4A0A0J9YYF1 115 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 ADIRFQ15847 76 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 TARBP1Q13395 1621 aaKnown RBP0.44□□□□□ -2.34
CLK1-208ENST00000464454 CFAP74Q9C0B2 1584 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 A0A0G2JMZ2 1700 aa0.44□□□□□ -2.34
CLK1-208ENST00000464454 PDCD11Q14690 1871 aaKnown RBP0.44□□□□□ -2.34
CLK1-208ENST00000464454 ABCC1P33527 1531 aa0.43□□□□□ -2.34
CLK1-208ENST00000464454 TMEM131LA2VDJ0 1609 aa0.43□□□□□ -2.34
CLK1-208ENST00000464454 LEPROTL1O95214 131 aa0.43□□□□□ -2.34
CLK1-208ENST00000464454 FDCSPQ8NFU4 85 aa0.43□□□□□ -2.34
CLK1-208ENST00000464454 C18orf32Q8TCD1 76 aa0.43□□□□□ -2.34
CLK1-208ENST00000464454 TP53AIP1Q9HCN2 124 aa0.43□□□□□ -2.34
CLK1-208ENST00000464454 XRN1Q8IZH2 1706 aaKnown RBP0.43□□□□□ -2.34
CLK1-208ENST00000464454 TNCP24821 2201 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 ALKQ9UM73 1620 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 CCDC88BA6NC98 1476 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 CD163L1Q9NR16 1453 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 ANKRD17O75179 2603 aaKnown RBP0.42□□□□□ -2.34
CLK1-208ENST00000464454 ANKARQ7Z5J8 1434 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 LCE6AA0A183 80 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 PHGR1C9JFL3 82 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 S100A3P33764 101 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 PLGLAQ15195 96 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 DEFB107AQ8IZN7 70 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 RGPD4Q7Z3J3 1758 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 PTPN23Q9H3S7 1636 aa0.42□□□□□ -2.34
CLK1-208ENST00000464454 ERCC6L2Q5T890 1561 aa0.41□□□□□ -2.34
CLK1-208ENST00000464454 A0A1B0GU69 56 aa0.41□□□□□ -2.34
CLK1-208ENST00000464454 CEBPZOSA8MTT3 80 aa0.41□□□□□ -2.34
CLK1-208ENST00000464454 COX6A2Q02221 97 aa0.41□□□□□ -2.34
CLK1-208ENST00000464454 Q5VSD8 79 aa0.41□□□□□ -2.34
CLK1-208ENST00000464454 AHCTF1Q8WYP5 2266 aa0.41□□□□□ -2.34
CLK1-208ENST00000464454 MUC5BQ9HC84 5762 aaPredicted RBP0.41□□□□□ -2.34
CLK1-208ENST00000464454 CACNA1HO95180 2353 aa0.41□□□□□ -2.34
CLK1-208ENST00000464454 PAPPAQ13219 1627 aa0.41□□□□□ -2.34
CLK1-208ENST00000464454 SETBP1Q9Y6X0 1596 aa0.4□□□□□ -2.34
CLK1-208ENST00000464454 RGPD3A6NKT7 1758 aaPredicted RBP0.4□□□□□ -2.35
CLK1-208ENST00000464454 PAPPA2Q9BXP8 1791 aa0.4□□□□□ -2.35
CLK1-208ENST00000464454 K7EQZ3 153 aa0.4□□□□□ -2.35
CLK1-208ENST00000464454 SPINK6Q6UWN8 80 aa0.4□□□□□ -2.35
CLK1-208ENST00000464454 ABCA8O94911 1581 aa0.4□□□□□ -2.35
CLK1-208ENST00000464454 CEP170BQ9Y4F5 1589 aaPredicted RBP0.4□□□□□ -2.35
CLK1-208ENST00000464454 GOLGA4Q13439 2230 aaKnown RBP0.4□□□□□ -2.35
CLK1-208ENST00000464454 USP32Q8NFA0 1604 aa0.39□□□□□ -2.35
CLK1-208ENST00000464454 CRYBG1Q9Y4K1 1723 aa0.39□□□□□ -2.35
CLK1-208ENST00000464454 MYH4Q9Y623 1939 aa0.39□□□□□ -2.35
CLK1-208ENST00000464454 A0A1B0GUT8 65 aa0.39□□□□□ -2.35
CLK1-208ENST00000464454 H3BUT2 72 aa0.39□□□□□ -2.35
CLK1-208ENST00000464454 HMGA1P17096 107 aaKnown RBP0.39□□□□□ -2.35
CLK1-208ENST00000464454 NKTRP30414 1462 aaKnown RBP0.39□□□□□ -2.35
CLK1-208ENST00000464454 BIVM-ERCC5R4GMW8 1640 aa0.38□□□□□ -2.35
CLK1-208ENST00000464454 KNDC1Q76NI1 1749 aa0.38□□□□□ -2.35
CLK1-208ENST00000464454 GNGT1P63211 74 aa0.38□□□□□ -2.35
CLK1-208ENST00000464454 PIGYQ3MUY2 71 aa0.38□□□□□ -2.35
CLK1-208ENST00000464454 Q8IZM0 81 aa0.38□□□□□ -2.35
CLK1-208ENST00000464454 LRRC37AA6NMS7 1700 aa0.38□□□□□ -2.35
CLK1-208ENST00000464454 URB2Q14146 1524 aaKnown RBP0.38□□□□□ -2.35
CLK1-208ENST00000464454 MAGI3Q5TCQ9 1506 aa0.38□□□□□ -2.35
CLK1-208ENST00000464454 CFDP00746 253 aaPredicted RBP0.37□□□□□ -2.35
CLK1-208ENST00000464454 MAST4O15021 2626 aa0.37□□□□□ -2.35
CLK1-208ENST00000464454 C5P01031 1676 aa0.37□□□□□ -2.35
CLK1-208ENST00000464454 KIAA0556O60303 1618 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms