RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 FSHBP01225 129 aa4.99□□□□□ -1.61
SYNE1-216ENST00000461872 LINC00694P0DN24 101 aa4.99□□□□□ -1.61
SYNE1-216ENST00000461872 C1orf158Q8N1D5 194 aa4.99□□□□□ -1.61
SYNE1-216ENST00000461872 UBE2AP49459 152 aa4.98□□□□□ -1.61
SYNE1-216ENST00000461872 PRO0628Q9UI54 55 aa4.98□□□□□ -1.61
SYNE1-216ENST00000461872 NHLRC4P0CG21 123 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-216ENST00000461872 FHL2Q14192 279 aa4.98□□□□□ -1.61
SYNE1-216ENST00000461872 OBSCN-AS1Q96MR7 158 aa4.98□□□□□ -1.61
SYNE1-216ENST00000461872 Q6ZQY7 126 aa4.98□□□□□ -1.61
SYNE1-216ENST00000461872 FAM19A5Q7Z5A7 132 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-216ENST00000461872 C19orf84I3L1E1 186 aa4.98□□□□□ -1.61
SYNE1-216ENST00000461872 IL17DQ8TAD2 202 aa4.98□□□□□ -1.61
SYNE1-216ENST00000461872 H0Y9J4 135 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 CENPEQ02224 2701 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 A0A0J9YWU9 116 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 A0A1W2PPR1 153 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 IGHV4-30-4P0DP06 118 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 ZNF575Q86XF7 245 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 LINC00167Q96N53 147 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 LINC00846Q9NV44 126 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 ACANP16112 2415 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 PROK1P58294 105 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 COX6A2Q02221 97 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 KLKP1Q107X0 134 aa4.97□□□□□ -1.61
SYNE1-216ENST00000461872 A0A087WYN8 130 aa4.96□□□□□ -1.61
SYNE1-216ENST00000461872 A8MZ25 164 aa4.96□□□□□ -1.61
SYNE1-216ENST00000461872 PRYO14603 147 aa4.96□□□□□ -1.62
SYNE1-216ENST00000461872 KLK12Q9UKR0 248 aa4.96□□□□□ -1.62
SYNE1-216ENST00000461872 H3BPC8 53 aa4.96□□□□□ -1.62
SYNE1-216ENST00000461872 FLNAP21333 2647 aaKnown RBP4.95□□□□□ -1.62
SYNE1-216ENST00000461872 C6orf223Q8N319 242 aa4.95□□□□□ -1.62
SYNE1-216ENST00000461872 SYCNQ0VAF6 134 aa4.95□□□□□ -1.62
SYNE1-216ENST00000461872 LINC01547P58512 204 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-216ENST00000461872 PRR15LQ9BU68 103 aa4.95□□□□□ -1.62
SYNE1-216ENST00000461872 CEP350Q5VT06 3117 aa4.95□□□□□ -1.62
SYNE1-216ENST00000461872 LINC01006Q8NI28 216 aa4.94□□□□□ -1.62
SYNE1-216ENST00000461872 IGLV10-54A0A075B6I4 117 aa4.94□□□□□ -1.62
SYNE1-216ENST00000461872 TMEM254Q8TBM7 123 aa4.94□□□□□ -1.62
SYNE1-216ENST00000461872 AVPP01185 164 aa4.94□□□□□ -1.62
SYNE1-216ENST00000461872 Q8N3U1 123 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 CYSRT1A8MQ03 144 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 CDSNQ15517 529 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 Q6ZSN1 163 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 DEFB135Q30KP9 77 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 SOSTDC1Q6X4U4 206 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 Q6ZVQ6 151 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 SPATA3Q8NHX4 192 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 J3QKU1 62 aa4.93□□□□□ -1.62
SYNE1-216ENST00000461872 WIPF1O43516 503 aa4.92□□□□□ -1.62
SYNE1-216ENST00000461872 LINC00612Q8N6U2 182 aa4.92□□□□□ -1.62
SYNE1-216ENST00000461872 MAPK1IP1LQ8NDC0 245 aa4.92□□□□□ -1.62
SYNE1-216ENST00000461872 Q6ZQT0 140 aa4.92□□□□□ -1.62
SYNE1-216ENST00000461872 LINC00482Q8N8I6 264 aa4.92□□□□□ -1.62
SYNE1-216ENST00000461872 IGLV6-57P01721 117 aa4.92□□□□□ -1.62
SYNE1-216ENST00000461872 MPLKIPQ8TAP9 179 aa4.92□□□□□ -1.62
SYNE1-216ENST00000461872 LINC00474Q9P2X8 69 aa4.92□□□□□ -1.62
SYNE1-216ENST00000461872 LRCOL1A6NCL2 159 aa4.91□□□□□ -1.62
SYNE1-216ENST00000461872 C10orf99Q6UWK7 81 aa4.91□□□□□ -1.62
SYNE1-216ENST00000461872 IGKV2-28A0A075B6P5 120 aa4.91□□□□□ -1.62
SYNE1-216ENST00000461872 IGKV2D-28P01615 120 aa4.91□□□□□ -1.62
SYNE1-216ENST00000461872 ELOF1P60002 83 aaKnown RBP4.91□□□□□ -1.62
SYNE1-216ENST00000461872 HTTP42858 3142 aa4.91□□□□□ -1.62
SYNE1-216ENST00000461872 GOLGB1Q14789 3259 aaKnown RBP4.91□□□□□ -1.62
SYNE1-216ENST00000461872 A0A0U1RQV1 116 aa4.9□□□□□ -1.62
SYNE1-216ENST00000461872 WFDC11Q8NEX6 87 aa4.9□□□□□ -1.62
SYNE1-216ENST00000461872 hDV103S1A0JD37 113 aa4.9□□□□□ -1.62
SYNE1-216ENST00000461872 SLPIP03973 132 aa4.9□□□□□ -1.62
SYNE1-216ENST00000461872 IGLV4-60A0A075B6I1 120 aa4.9□□□□□ -1.63
SYNE1-216ENST00000461872 BBC3Q96PG8 261 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-216ENST00000461872 ESRGQ1W209 222 aa4.9□□□□□ -1.63
SYNE1-216ENST00000461872 B9D2Q9BPU9 175 aa4.9□□□□□ -1.63
SYNE1-216ENST00000461872 ZNF706Q9Y5V0 76 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-216ENST00000461872 FAM218AQ96MZ4 157 aa4.89□□□□□ -1.63
SYNE1-216ENST00000461872 LYPD5Q6UWN5 251 aa4.89□□□□□ -1.63
SYNE1-216ENST00000461872 SRCAPQ6ZRS2 3230 aa4.88□□□□□ -1.63
SYNE1-216ENST00000461872 FASNP49327 2511 aaKnown RBP4.87□□□□□ -1.63
SYNE1-216ENST00000461872 TRAV10A0A0B4J240 114 aa4.87□□□□□ -1.63
SYNE1-216ENST00000461872 LIMD2Q9BT23 127 aa4.87□□□□□ -1.63
SYNE1-216ENST00000461872 A0A087WVE0 104 aa4.87□□□□□ -1.63
SYNE1-216ENST00000461872 UNQ6190/PRO20217Q6UXQ8 127 aa4.87□□□□□ -1.63
SYNE1-216ENST00000461872 C11orf45Q8TAV5 145 aa4.87□□□□□ -1.63
SYNE1-216ENST00000461872 CELA1Q9UNI1 258 aa4.87□□□□□ -1.63
SYNE1-216ENST00000461872 HCG22E2RYF7 251 aa4.87□□□□□ -1.63
SYNE1-216ENST00000461872 C1orf137Q5JT78 98 aa4.86□□□□□ -1.63
SYNE1-216ENST00000461872 KPRPQ5T749 579 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-216ENST00000461872 A6NED7 52 aa4.86□□□□□ -1.63
SYNE1-216ENST00000461872 TP53AIP1Q9HCN2 124 aa4.86□□□□□ -1.63
SYNE1-216ENST00000461872 IGKV2-24A0A0C4DH68 120 aa4.86□□□□□ -1.63
SYNE1-216ENST00000461872 TRBV7-4A0A0J9YYF1 115 aa4.86□□□□□ -1.63
SYNE1-216ENST00000461872 A0A096LNI7 61 aa4.86□□□□□ -1.63
SYNE1-216ENST00000461872 PRR4Q16378 134 aa4.86□□□□□ -1.63
SYNE1-216ENST00000461872 EIF4EBP3O60516 100 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-216ENST00000461872 LINC01556Q5JQF7 62 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 SMCR5Q8TEV8 140 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 HIGD2AQ9BW72 106 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 PRR34Q9NV39 138 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 LOC100131303A0A0U1RQF7 123 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 CSNK1G2-AS1Q8NCQ2 148 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-216ENST00000461872 EDN2P20800 178 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms