RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 IGKCP01834 107 aa7.16□□□□□ -1.26
USP39-210ENST00000459775 CXCL5P42830 114 aa7.16□□□□□ -1.26
USP39-210ENST00000459775 SMIM2Q9BVW6 85 aa7.16□□□□□ -1.26
USP39-210ENST00000459775 NPC2P61916 151 aa7.15□□□□□ -1.26
USP39-210ENST00000459775 RHOHQ15669 191 aa7.15□□□□□ -1.26
USP39-210ENST00000459775 TRBV6-5A0A0K0K1A5 114 aa7.15□□□□□ -1.27
USP39-210ENST00000459775 TSHBP01222 138 aa7.15□□□□□ -1.27
USP39-210ENST00000459775 Q8N8P6 123 aa7.15□□□□□ -1.27
USP39-210ENST00000459775 CSMD3Q7Z407 3707 aa7.14□□□□□ -1.27
USP39-210ENST00000459775 RYR2Q92736 4967 aa7.14□□□□□ -1.27
USP39-210ENST00000459775 UBE2D3P61077 147 aa7.14□□□□□ -1.27
USP39-210ENST00000459775 UBE2D2P62837 147 aa7.14□□□□□ -1.27
USP39-210ENST00000459775 RPL36AP83881 106 aaKnown RBP7.14□□□□□ -1.27
USP39-210ENST00000459775 Q75L30 129 aa7.14□□□□□ -1.27
USP39-210ENST00000459775 RPL36ALQ969Q0 106 aaKnown RBP7.14□□□□□ -1.27
USP39-210ENST00000459775 TENM2Q9NT68 2774 aa7.14□□□□□ -1.27
USP39-210ENST00000459775 A0A096LNJ9 63 aa7.13□□□□□ -1.27
USP39-210ENST00000459775 PLA2G1BP04054 148 aaKnown RBP7.13□□□□□ -1.27
USP39-210ENST00000459775 NTM-AS1Q6ZSK4 140 aa7.13□□□□□ -1.27
USP39-210ENST00000459775 LINC00173Q6ZV60 143 aa7.13□□□□□ -1.27
USP39-210ENST00000459775 TRBV10-1A0A0K0K1A3 114 aa7.13□□□□□ -1.27
USP39-210ENST00000459775 TRBV27A0A0K0K1C4 114 aa7.13□□□□□ -1.27
USP39-210ENST00000459775 RPL39P62891 51 aaKnown RBP7.13□□□□□ -1.27
USP39-210ENST00000459775 IGHV1-24A0A0C4DH33 117 aa7.12□□□□□ -1.27
USP39-210ENST00000459775 IGLL5B9A064 214 aa7.12□□□□□ -1.27
USP39-210ENST00000459775 I3L3M4 83 aa7.12□□□□□ -1.27
USP39-210ENST00000459775 NDUFS5O43920 106 aa7.12□□□□□ -1.27
USP39-210ENST00000459775 MRPS36P82909 103 aaKnown RBP7.12□□□□□ -1.27
USP39-210ENST00000459775 TRAV10A0A0B4J240 114 aa7.12□□□□□ -1.27
USP39-210ENST00000459775 PPP1R17O96001 155 aa7.12□□□□□ -1.27
USP39-210ENST00000459775 SMCPP49901 116 aaPredicted RBP7.12□□□□□ -1.27
USP39-210ENST00000459775 CEMP1Q6PRD7 247 aaPredicted RBP7.12□□□□□ -1.27
USP39-210ENST00000459775 NXT2Q9NPJ8 142 aaKnown RBP7.12□□□□□ -1.27
USP39-210ENST00000459775 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.11□□□□□ -1.27
USP39-210ENST00000459775 IGKV2-29A2NJV5 120 aaPredicted RBP7.11□□□□□ -1.27
USP39-210ENST00000459775 FCER1GP30273 86 aa7.11□□□□□ -1.27
USP39-210ENST00000459775 SRSF9Q13242 221 aaKnown RBP eCLIP7.11□□□□□ -1.27
USP39-210ENST00000459775 LGALS9CQ6DKI2 356 aa7.11□□□□□ -1.27
USP39-210ENST00000459775 hADV29S1A0JD25 119 aa7.1□□□□□ -1.27
USP39-210ENST00000459775 ATOX1O00244 68 aa7.1□□□□□ -1.27
USP39-210ENST00000459775 Q8N3U1 123 aa7.1□□□□□ -1.27
USP39-210ENST00000459775 OPRPNQ99935 248 aaPredicted RBP7.1□□□□□ -1.27
USP39-210ENST00000459775 KRTAP17-1Q9BYP8 105 aa7.1□□□□□ -1.27
USP39-210ENST00000459775 DNAH1Q9P2D7 4330 aa7.1□□□□□ -1.27
USP39-210ENST00000459775 EPPK1P58107 5090 aaKnown RBP7.1□□□□□ -1.27
USP39-210ENST00000459775 FP248Q71RG6 208 aaPredicted RBP7.1□□□□□ -1.27
USP39-210ENST00000459775 CHCHD7Q9BUK0 85 aa7.1□□□□□ -1.27
USP39-210ENST00000459775 CHCHD1Q96BP2 118 aaKnown RBP7.09□□□□□ -1.27
USP39-210ENST00000459775 ICOSQ9Y6W8 199 aa7.09□□□□□ -1.27
USP39-210ENST00000459775 hDV102S1A0JD36 115 aa7.09□□□□□ -1.28
USP39-210ENST00000459775 LINC01546A6NGU7 62 aa7.09□□□□□ -1.28
USP39-210ENST00000459775 LINC01600Q96MT4 127 aa7.09□□□□□ -1.28
USP39-210ENST00000459775 CHAC1Q9BUX1 264 aa7.09□□□□□ -1.28
USP39-210ENST00000459775 ESRGQ1W209 222 aa7.08□□□□□ -1.28
USP39-210ENST00000459775 UPK3BQ9BT76 320 aa7.08□□□□□ -1.28
USP39-210ENST00000459775 LYSTQ99698 3801 aa7.08□□□□□ -1.28
USP39-210ENST00000459775 M0R378 163 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 RNASE13Q5GAN3 156 aaKnown RBP7.07□□□□□ -1.28
USP39-210ENST00000459775 LYPD5Q6UWN5 251 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 C2orf66Q6UXQ4 117 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 DNAH7Q8WXX0 4024 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 STARD9Q9P2P6 4700 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 TRBV6-8A0A0A6YYG3 113 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 C6orf223Q8N319 242 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 C20orf203Q8NBC4 194 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 HIGD1BQ9P298 99 aa7.07□□□□□ -1.28
USP39-210ENST00000459775 PLECQ15149 4684 aaKnown RBP7.07□□□□□ -1.28
USP39-210ENST00000459775 HBDP02042 147 aa7.06□□□□□ -1.28
USP39-210ENST00000459775 SCGB1C2P0DMR2 95 aa7.06□□□□□ -1.28
USP39-210ENST00000459775 ORMDL2Q53FV1 153 aa7.06□□□□□ -1.28
USP39-210ENST00000459775 SACSQ9NZJ4 4579 aa7.06□□□□□ -1.28
USP39-210ENST00000459775 FAM104AQ969W3 186 aa7.06□□□□□ -1.28
USP39-210ENST00000459775 UBE2L6O14933 153 aa7.05□□□□□ -1.28
USP39-210ENST00000459775 LEPROTL1O95214 131 aa7.05□□□□□ -1.28
USP39-210ENST00000459775 LGALS3P17931 250 aaKnown RBP7.05□□□□□ -1.28
USP39-210ENST00000459775 TOMM6Q96B49 74 aa7.05□□□□□ -1.28
USP39-210ENST00000459775 Q9HAA7 133 aa7.05□□□□□ -1.28
USP39-210ENST00000459775 TRBV25-1A0A075B6N4 114 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 H3BNG1 76 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 WFDC10BQ8IUB3 73 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 SCGB3A1Q96QR1 104 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 TMEM243Q9BU79 118 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 IGLV4-60A0A075B6I1 120 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 IGIPA6NJ69 53 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 TRIAP1O43715 76 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 HIST1H4AP62805 103 aaKnown RBP7.04□□□□□ -1.28
USP39-210ENST00000459775 FAM19A3Q7Z5A8 133 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 APLNQ9ULZ1 77 aa7.04□□□□□ -1.28
USP39-210ENST00000459775 ZNF73O43830 326 aaPredicted RBP7.03□□□□□ -1.28
USP39-210ENST00000459775 UBE2D4Q9Y2X8 147 aa7.03□□□□□ -1.28
USP39-210ENST00000459775 LINC00588Q9Y4M8 146 aa7.03□□□□□ -1.28
USP39-210ENST00000459775 A8MUN3 132 aa7.02□□□□□ -1.29
USP39-210ENST00000459775 H0Y9J4 135 aa7.02□□□□□ -1.29
USP39-210ENST00000459775 K7EMI3 77 aa7.02□□□□□ -1.29
USP39-210ENST00000459775 CLPSL2Q6UWE3 100 aa7.02□□□□□ -1.29
USP39-210ENST00000459775 PHF5AQ7RTV0 110 aaKnown RBP7.02□□□□□ -1.29
USP39-210ENST00000459775 SERP2Q8N6R1 65 aa7.02□□□□□ -1.29
USP39-210ENST00000459775 IFI27L1Q96BM0 104 aa7.02□□□□□ -1.29
USP39-210ENST00000459775 TRAV8-3A0A0A6YYJ7 113 aa7.01□□□□□ -1.29
USP39-210ENST00000459775 IGHV3-30P01768 117 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms