RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 MAP1LC3AQ9H492 121 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 C9JQL5 133 aa4.35□□□□□ -1.71
VPS41-208ENST00000448833 NDUFC2-KCTD14E9PQ53 114 aa4.35□□□□□ -1.71
VPS41-208ENST00000448833 NPYP01303 97 aa4.35□□□□□ -1.71
VPS41-208ENST00000448833 PRSS2P07478 247 aa4.35□□□□□ -1.71
VPS41-208ENST00000448833 ORMDL2Q53FV1 153 aa4.35□□□□□ -1.71
VPS41-208ENST00000448833 VCX2Q9H322 139 aa4.35□□□□□ -1.71
VPS41-208ENST00000448833 CYSLTR1Q9Y271 337 aa4.35□□□□□ -1.71
VPS41-208ENST00000448833 LINC01549A6NIU2 74 aa4.34□□□□□ -1.71
VPS41-208ENST00000448833 IGLV7-43P04211 117 aa4.34□□□□□ -1.71
VPS41-208ENST00000448833 CKS1BP61024 79 aa4.34□□□□□ -1.71
VPS41-208ENST00000448833 LINC00242Q5T6M2 205 aa4.34□□□□□ -1.71
VPS41-208ENST00000448833 UNQ6190/PRO20217Q6UXQ8 127 aa4.34□□□□□ -1.71
VPS41-208ENST00000448833 PHF5AQ7RTV0 110 aaKnown RBP4.34□□□□□ -1.71
VPS41-208ENST00000448833 Q8N8P6 123 aa4.34□□□□□ -1.71
VPS41-208ENST00000448833 KRTAP9-8Q9BYQ0 159 aa4.34□□□□□ -1.71
VPS41-208ENST00000448833 NXT2Q9NPJ8 142 aaKnown RBP4.34□□□□□ -1.71
VPS41-208ENST00000448833 TNXBP22105 4242 aa4.34□□□□□ -1.72
VPS41-208ENST00000448833 IGLV4-3A0A075B6K6 122 aa4.33□□□□□ -1.72
VPS41-208ENST00000448833 UBE2BP63146 152 aa4.33□□□□□ -1.72
VPS41-208ENST00000448833 GAGE2EQ4V326 116 aa4.33□□□□□ -1.72
VPS41-208ENST00000448833 C6orf226Q5I0X4 101 aa4.33□□□□□ -1.72
VPS41-208ENST00000448833 FAM104AQ969W3 186 aa4.33□□□□□ -1.72
VPS41-208ENST00000448833 CTDSP1Q9GZU7 261 aa4.33□□□□□ -1.72
VPS41-208ENST00000448833 C6orf48Q9UBA6 75 aa4.33□□□□□ -1.72
VPS41-208ENST00000448833 GAGE2DQ9UEU5 116 aa4.33□□□□□ -1.72
VPS41-208ENST00000448833 IGLV1-50A0A075B6I6 118 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 LOC389332A0A1B0GUA5 103 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 H0Y9J4 135 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 RPL13AP40429 203 aaKnown RBP4.32□□□□□ -1.72
VPS41-208ENST00000448833 PCP4P48539 62 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 UBE2D1P51668 147 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 HERVK_113P63121 156 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 IFITM2Q01629 132 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 KIAA0087Q14695 138 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 LBHQ53QV2 105 aaPredicted RBP4.32□□□□□ -1.72
VPS41-208ENST00000448833 CLLU1Q5K131 121 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 C10orf25Q5T742 122 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 C2orf66Q6UXQ4 117 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 FAM19A5Q7Z5A7 132 aaPredicted RBP4.32□□□□□ -1.72
VPS41-208ENST00000448833 Q8IZM0 81 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 LRP2P98164 4655 aa4.32□□□□□ -1.72
VPS41-208ENST00000448833 M0QXV9 152 aa4.31□□□□□ -1.72
VPS41-208ENST00000448833 NUPR1O60356 82 aa4.31□□□□□ -1.72
VPS41-208ENST00000448833 FAM19A3Q7Z5A8 133 aa4.31□□□□□ -1.72
VPS41-208ENST00000448833 AMELXQ99217 191 aa4.31□□□□□ -1.72
VPS41-208ENST00000448833 ALKBH7Q9BT30 221 aaPredicted RBP4.31□□□□□ -1.72
VPS41-208ENST00000448833 GEMIN7Q9H840 131 aaKnown RBP4.31□□□□□ -1.72
VPS41-208ENST00000448833 RNF213Q63HN8 5207 aa4.31□□□□□ -1.72
VPS41-208ENST00000448833 TRAV9-1A0A075B6T8 112 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 FAM168BA1KXE4 195 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 IGIPA6NJ69 53 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 F8VRH5 84 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 ATP6V1G1O75348 118 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 S100A1P23297 94 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 CXCL5P42830 114 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 C2orf82Q6UX34 121 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 TIMM17AQ99595 171 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 TOMM7Q9P0U1 55 aa4.3□□□□□ -1.72
VPS41-208ENST00000448833 CARHSP1Q9Y2V2 147 aaKnown RBP4.3□□□□□ -1.72
VPS41-208ENST00000448833 ERASQ7Z444 233 aa4.29□□□□□ -1.72
VPS41-208ENST00000448833 COMMD7Q86VX2 200 aa4.29□□□□□ -1.72
VPS41-208ENST00000448833 TP73-AS1Q9UF72 201 aa4.29□□□□□ -1.72
VPS41-208ENST00000448833 C9orf118A6NHY6 69 aa4.28□□□□□ -1.72
VPS41-208ENST00000448833 ZNF861PO60384 105 aa4.28□□□□□ -1.72
VPS41-208ENST00000448833 S100PP25815 95 aa4.28□□□□□ -1.72
VPS41-208ENST00000448833 COX19Q49B96 90 aa4.28□□□□□ -1.72
VPS41-208ENST00000448833 PRR26Q8N8Z3 221 aa4.28□□□□□ -1.72
VPS41-208ENST00000448833 TOMM6Q96B49 74 aa4.28□□□□□ -1.72
VPS41-208ENST00000448833 RPL28P46779 137 aaKnown RBP4.27□□□□□ -1.73
VPS41-208ENST00000448833 PDZD11Q5EBL8 140 aa4.27□□□□□ -1.73
VPS41-208ENST00000448833 C9orf129Q5T035 196 aaKnown RBP4.27□□□□□ -1.73
VPS41-208ENST00000448833 UQCC3Q6UW78 93 aa4.27□□□□□ -1.73
VPS41-208ENST00000448833 LINC00173Q6ZV60 143 aa4.27□□□□□ -1.73
VPS41-208ENST00000448833 SCGB3A1Q96QR1 104 aa4.27□□□□□ -1.73
VPS41-208ENST00000448833 CDKN2A-AS1Q9UH64 79 aa4.27□□□□□ -1.73
VPS41-208ENST00000448833 C22orf24Q9Y442 160 aa4.27□□□□□ -1.73
VPS41-208ENST00000448833 TINCRA0A1B0GVN0 87 aa4.26□□□□□ -1.73
VPS41-208ENST00000448833 H3BRM9 83 aa4.26□□□□□ -1.73
VPS41-208ENST00000448833 S100A12P80511 92 aa4.26□□□□□ -1.73
VPS41-208ENST00000448833 LCE4AQ5TA78 99 aa4.26□□□□□ -1.73
VPS41-208ENST00000448833 MRPL55Q7Z7F7 128 aaKnown RBP4.26□□□□□ -1.73
VPS41-208ENST00000448833 KRTAP7-1Q8IUC3 87 aa4.26□□□□□ -1.73
VPS41-208ENST00000448833 GNB1LQ9BYB4 327 aa4.26□□□□□ -1.73
VPS41-208ENST00000448833 BCE1O60756 84 aa4.25□□□□□ -1.73
VPS41-208ENST00000448833 KRTAP1-4P0C5Y4 121 aa4.25□□□□□ -1.73
VPS41-208ENST00000448833 ZC2HC1BQ5TFG8 222 aa4.25□□□□□ -1.73
VPS41-208ENST00000448833 KRTAP11-1Q8IUC1 163 aa4.25□□□□□ -1.73
VPS41-208ENST00000448833 COX7B2Q8TF08 81 aa4.25□□□□□ -1.73
VPS41-208ENST00000448833 XAGE1AQ9HD64 81 aa4.25□□□□□ -1.73
VPS41-208ENST00000448833 SMCO4Q9NRQ5 59 aa4.25□□□□□ -1.73
VPS41-208ENST00000448833 IGLV5-45A0A087WSX0 123 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 GAGE10A6NGK3 116 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 LINC01546A6NGU7 62 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 ATP5LO75964 103 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 CRYGAP11844 174 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 PMVKQ15126 192 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 SFTA2Q6UW10 78 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 FA2HQ7L5A8 372 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 NKAPP1Q8N9T2 125 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms