RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 KRTAP10-3P60369 221 aa5.2□□□□□ -1.58
SYNE1-213ENST00000448038 TRIAP1O43715 76 aa5.2□□□□□ -1.58
SYNE1-213ENST00000448038 C9orf153Q5TBE3 101 aa5.2□□□□□ -1.58
SYNE1-213ENST00000448038 M0R378 163 aa5.19□□□□□ -1.58
SYNE1-213ENST00000448038 ACYP1P07311 99 aa5.19□□□□□ -1.58
SYNE1-213ENST00000448038 TRAV23DV6A0A075B6W5 121 aa5.19□□□□□ -1.58
SYNE1-213ENST00000448038 C9orf116Q5BN46 136 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-213ENST00000448038 USP17L23D6RBM5 183 aa5.19□□□□□ -1.58
SYNE1-213ENST00000448038 TSPEAR-AS2P59090 65 aa5.19□□□□□ -1.58
SYNE1-213ENST00000448038 C4orf48Q5BLP8 95 aa5.19□□□□□ -1.58
SYNE1-213ENST00000448038 NTM-AS1Q6ZSK4 140 aa5.19□□□□□ -1.58
SYNE1-213ENST00000448038 EGFEM1PQ0D2K5 195 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 MUC7Q8TAX7 377 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 TRBV30A0A0K0K1B3 111 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 C7orf33Q8WU49 177 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 Q9UF83 564 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 LRCOL1A6NCL2 159 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 Q8NAQ8 132 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 SLPIP03973 132 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 NREPQ16612 68 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 IGSF10Q6WRI0 2623 aa5.18□□□□□ -1.58
SYNE1-213ENST00000448038 RPL37AP8A6NKH3 93 aa5.17□□□□□ -1.58
SYNE1-213ENST00000448038 ESRGQ1W209 222 aa5.17□□□□□ -1.58
SYNE1-213ENST00000448038 ATRQ13535 2644 aa5.17□□□□□ -1.58
SYNE1-213ENST00000448038 FOXI1Q12951 378 aa5.17□□□□□ -1.58
SYNE1-213ENST00000448038 C14orf132Q9NPU4 83 aa5.17□□□□□ -1.58
SYNE1-213ENST00000448038 A0A096LNI7 61 aa5.17□□□□□ -1.58
SYNE1-213ENST00000448038 LINC00474Q9P2X8 69 aa5.17□□□□□ -1.58
SYNE1-213ENST00000448038 VCANP13611 3396 aa5.16□□□□□ -1.58
SYNE1-213ENST00000448038 C6orf223Q8N319 242 aa5.16□□□□□ -1.58
SYNE1-213ENST00000448038 SMIM11BQ8TCY0 68 aa5.16□□□□□ -1.58
SYNE1-213ENST00000448038 MGAM2Q2M2H8 2515 aa5.16□□□□□ -1.58
SYNE1-213ENST00000448038 LINC01546A6NGU7 62 aa5.16□□□□□ -1.58
SYNE1-213ENST00000448038 PDE6GP18545 87 aa5.16□□□□□ -1.58
SYNE1-213ENST00000448038 H3BNG1 76 aa5.15□□□□□ -1.58
SYNE1-213ENST00000448038 A8MTW9 85 aa5.15□□□□□ -1.59
SYNE1-213ENST00000448038 C1orf134Q5TEV5 83 aa5.15□□□□□ -1.59
SYNE1-213ENST00000448038 NDUFS5O43920 106 aa5.15□□□□□ -1.59
SYNE1-213ENST00000448038 NDUFB1O75438 58 aa5.15□□□□□ -1.59
SYNE1-213ENST00000448038 KRTAP10-11P60412 298 aa5.15□□□□□ -1.59
SYNE1-213ENST00000448038 LINC01556Q5JQF7 62 aa5.15□□□□□ -1.59
SYNE1-213ENST00000448038 IGKV3D-7A0A0C4DH55 119 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 ZNF73O43830 326 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-213ENST00000448038 ADAMTSL4-AS1Q5T5F5 129 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 CSNK1G2-AS1Q8NCQ2 148 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 MDFIQ99750 246 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 DNAH14Q0VDD8 3507 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 LINC01561Q8N1V8 128 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 Q6ZQY7 126 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 C2orf48Q96LS8 159 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 CELSR3Q9NYQ7 3312 aa5.14□□□□□ -1.59
SYNE1-213ENST00000448038 IGLV5-52A0A0A0MRZ9 124 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 M0QXV9 152 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 C19orf73Q9NVV2 129 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 NDUFC2-KCTD14E9PQ53 114 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 PRR3P79522 188 aaKnown RBP5.13□□□□□ -1.59
SYNE1-213ENST00000448038 CR1P17927 2039 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 DHRS4-AS1Q9P1J3 65 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 IGHV3OR16-9A0A0B4J2B5 98 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 TEX49A0A1B0GTD5 131 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 F8WDY8 70 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 PPDPFQ9H3Y8 114 aa5.13□□□□□ -1.59
SYNE1-213ENST00000448038 MAST4O15021 2626 aa5.12□□□□□ -1.59
SYNE1-213ENST00000448038 PLAC8L1A1L4L8 177 aa5.12□□□□□ -1.59
SYNE1-213ENST00000448038 K7EIL1 84 aa5.12□□□□□ -1.59
SYNE1-213ENST00000448038 Q6ZRU5 148 aa5.12□□□□□ -1.59
SYNE1-213ENST00000448038 TRBV10-3A0A0K0K1G6 114 aa5.12□□□□□ -1.59
SYNE1-213ENST00000448038 LST1O00453 97 aa5.12□□□□□ -1.59
SYNE1-213ENST00000448038 EYSQ5T1H1 3165 aa5.12□□□□□ -1.59
SYNE1-213ENST00000448038 GIG44P09565 113 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-213ENST00000448038 IGLV5-39A0A0G2JS06 123 aa5.11□□□□□ -1.59
SYNE1-213ENST00000448038 Q8N3U1 123 aa5.11□□□□□ -1.59
SYNE1-213ENST00000448038 REV3LO60673 3130 aa5.11□□□□□ -1.59
SYNE1-213ENST00000448038 TEP1Q99973 2627 aaKnown RBP5.1□□□□□ -1.59
SYNE1-213ENST00000448038 H0Y9J4 135 aa5.1□□□□□ -1.59
SYNE1-213ENST00000448038 ZNF706Q9Y5V0 76 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-213ENST00000448038 SPTBN5Q9NRC6 3674 aaKnown RBP5.09□□□□□ -1.59
SYNE1-213ENST00000448038 TMEM258P61165 79 aa5.09□□□□□ -1.59
SYNE1-213ENST00000448038 LINC00588Q9Y4M8 146 aa5.09□□□□□ -1.59
SYNE1-213ENST00000448038 CCKP06307 115 aa5.09□□□□□ -1.6
SYNE1-213ENST00000448038 NDUFC2O95298 119 aa5.09□□□□□ -1.6
SYNE1-213ENST00000448038 RPL28P46779 137 aaKnown RBP5.09□□□□□ -1.6
SYNE1-213ENST00000448038 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.09□□□□□ -1.6
SYNE1-213ENST00000448038 A0A1B0GX51 115 aa5.08□□□□□ -1.6
SYNE1-213ENST00000448038 BPY2O14599 106 aa5.08□□□□□ -1.6
SYNE1-213ENST00000448038 REG3GQ6UW15 175 aa5.08□□□□□ -1.6
SYNE1-213ENST00000448038 MAP1AP78559 2803 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-213ENST00000448038 FRYLO94915 3013 aa5.08□□□□□ -1.6
SYNE1-213ENST00000448038 IGLV5-45A0A087WSX0 123 aa5.08□□□□□ -1.6
SYNE1-213ENST00000448038 SPATA3Q8NHX4 192 aa5.08□□□□□ -1.6
SYNE1-213ENST00000448038 LINC00643Q86TS7 51 aa5.07□□□□□ -1.6
SYNE1-213ENST00000448038 UNC79Q9P2D8 2635 aa5.07□□□□□ -1.6
SYNE1-213ENST00000448038 MRPL55Q7Z7F7 128 aaKnown RBP5.07□□□□□ -1.6
SYNE1-213ENST00000448038 CHD6Q8TD26 2715 aa5.07□□□□□ -1.6
SYNE1-213ENST00000448038 DMXL2Q8TDJ6 3036 aa5.07□□□□□ -1.6
SYNE1-213ENST00000448038 IGLV9-49A0A0B4J1Y8 123 aa5.06□□□□□ -1.6
SYNE1-213ENST00000448038 FAM236AA0A1B0GUQ0 79 aa5.06□□□□□ -1.6
SYNE1-213ENST00000448038 FAM236BA0A1B0GV22 79 aa5.06□□□□□ -1.6
SYNE1-213ENST00000448038 C3orf84H3BNL1 204 aa5.06□□□□□ -1.6
SYNE1-213ENST00000448038 ENHOQ6UWT2 76 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms