RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 KIAA1644Q3SXP7 199 aa12.36□□□□□ -0.43
SHROOM1-204ENST00000440118 A0A1W2PNN7 141 aa12.35□□□□□ -0.43
SHROOM1-204ENST00000440118 FABP4P15090 132 aa12.35□□□□□ -0.43
SHROOM1-204ENST00000440118 PAPPA-AS1Q5QFB9 102 aa12.35□□□□□ -0.43
SHROOM1-204ENST00000440118 ZC2HC1BQ5TFG8 222 aa12.35□□□□□ -0.43
SHROOM1-204ENST00000440118 UNQ6190/PRO20217Q6UXQ8 127 aa12.35□□□□□ -0.43
SHROOM1-204ENST00000440118 PRSS2P07478 247 aa12.34□□□□□ -0.43
SHROOM1-204ENST00000440118 C10orf25Q5T742 122 aa12.34□□□□□ -0.43
SHROOM1-204ENST00000440118 REG3GQ6UW15 175 aa12.34□□□□□ -0.43
SHROOM1-204ENST00000440118 SPINK6Q6UWN8 80 aa12.34□□□□□ -0.43
SHROOM1-204ENST00000440118 C6orf48Q9UBA6 75 aa12.34□□□□□ -0.43
SHROOM1-204ENST00000440118 NPSP0C0P6 89 aa12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 MT1HL1P0DM35 61 aa12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 GAGE2EQ4V326 116 aa12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 CHCHD1Q96BP2 118 aaKnown RBP12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 C12orf57Q99622 126 aa12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 HIST1H2BLQ99880 126 aa12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 ALKBH7Q9BT30 221 aaPredicted RBP12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 TOMM7Q9P0U1 55 aa12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 GAGE2DQ9UEU5 116 aa12.33□□□□□ -0.44
SHROOM1-204ENST00000440118 HMCN2Q8NDA2 5059 aa12.32□□□□□ -0.44
SHROOM1-204ENST00000440118 AMELXQ99217 191 aa12.32□□□□□ -0.44
SHROOM1-204ENST00000440118 SEC11AP67812 179 aa12.31□□□□□ -0.44
SHROOM1-204ENST00000440118 LINC00173Q6ZV60 143 aa12.31□□□□□ -0.44
SHROOM1-204ENST00000440118 PHF5AQ7RTV0 110 aaKnown RBP12.31□□□□□ -0.44
SHROOM1-204ENST00000440118 FAM19A5Q7Z5A7 132 aaPredicted RBP12.31□□□□□ -0.44
SHROOM1-204ENST00000440118 GEMIN7Q9H840 131 aaKnown RBP12.31□□□□□ -0.44
SHROOM1-204ENST00000440118 TRBV30A0A0K0K1B3 111 aa12.3□□□□□ -0.44
SHROOM1-204ENST00000440118 IGIPA6NJ69 53 aa12.3□□□□□ -0.44
SHROOM1-204ENST00000440118 HSBP1O75506 76 aa12.3□□□□□ -0.44
SHROOM1-204ENST00000440118 CKS1BP61024 79 aa12.3□□□□□ -0.44
SHROOM1-204ENST00000440118 S100A12P80511 92 aa12.3□□□□□ -0.44
SHROOM1-204ENST00000440118 PDZD11Q5EBL8 140 aa12.3□□□□□ -0.44
SHROOM1-204ENST00000440118 C2orf82Q6UX34 121 aa12.3□□□□□ -0.44
SHROOM1-204ENST00000440118 LINC01561Q8N1V8 128 aa12.3□□□□□ -0.44
SHROOM1-204ENST00000440118 TLX1NBP0CAT3 122 aa12.29□□□□□ -0.44
SHROOM1-204ENST00000440118 HERVK_113P63121 156 aa12.29□□□□□ -0.44
SHROOM1-204ENST00000440118 KIAA0087Q14695 138 aa12.29□□□□□ -0.44
SHROOM1-204ENST00000440118 C18orf32Q8TCD1 76 aa12.29□□□□□ -0.44
SHROOM1-204ENST00000440118 TIMM17AQ99595 171 aa12.29□□□□□ -0.44
SHROOM1-204ENST00000440118 PSORS1C2Q9UIG4 136 aa12.29□□□□□ -0.44
SHROOM1-204ENST00000440118 SERF1AO75920 110 aa12.28□□□□□ -0.44
SHROOM1-204ENST00000440118 C1orf137Q5JT78 98 aa12.28□□□□□ -0.44
SHROOM1-204ENST00000440118 TOMM6Q96B49 74 aa12.28□□□□□ -0.44
SHROOM1-204ENST00000440118 SCGB3A1Q96QR1 104 aa12.28□□□□□ -0.44
SHROOM1-204ENST00000440118 FAM168BA1KXE4 195 aa12.27□□□□□ -0.45
SHROOM1-204ENST00000440118 JOSD1Q15040 202 aaPredicted RBP12.27□□□□□ -0.45
SHROOM1-204ENST00000440118 C6orf226Q5I0X4 101 aa12.27□□□□□ -0.45
SHROOM1-204ENST00000440118 LINC01600Q96MT4 127 aa12.27□□□□□ -0.45
SHROOM1-204ENST00000440118 NDUFC2-KCTD14E9PQ53 114 aa12.26□□□□□ -0.45
SHROOM1-204ENST00000440118 LINC00614P0C842 121 aa12.25□□□□□ -0.45
SHROOM1-204ENST00000440118 FA2HQ7L5A8 372 aa12.25□□□□□ -0.45
SHROOM1-204ENST00000440118 ERASQ7Z444 233 aa12.25□□□□□ -0.45
SHROOM1-204ENST00000440118 UBE2BP63146 152 aa12.24□□□□□ -0.45
SHROOM1-204ENST00000440118 Q8IZM0 81 aa12.24□□□□□ -0.45
SHROOM1-204ENST00000440118 LINC00469Q8N7U9 141 aa12.24□□□□□ -0.45
SHROOM1-204ENST00000440118 CDKN2A-AS1Q9UH64 79 aa12.24□□□□□ -0.45
SHROOM1-204ENST00000440118 LINC01549A6NIU2 74 aa12.23□□□□□ -0.45
SHROOM1-204ENST00000440118 M0QXV9 152 aa12.23□□□□□ -0.45
SHROOM1-204ENST00000440118 SRSF9Q13242 221 aaKnown RBP eCLIP12.23□□□□□ -0.45
SHROOM1-204ENST00000440118 FAM19A3Q7Z5A8 133 aa12.23□□□□□ -0.45
SHROOM1-204ENST00000440118 HSPB8Q9UJY1 196 aa12.22□□□□□ -0.45
SHROOM1-204ENST00000440118 SCGB1D1O95968 90 aa12.2□□□□□ -0.46
SHROOM1-204ENST00000440118 C20orf202A1L168 122 aa12.19□□□□□ -0.46
SHROOM1-204ENST00000440118 CXCL5P42830 114 aa12.19□□□□□ -0.46
SHROOM1-204ENST00000440118 PYY3Q5JQD4 70 aa12.19□□□□□ -0.46
SHROOM1-204ENST00000440118 F8VRH5 84 aa12.18□□□□□ -0.46
SHROOM1-204ENST00000440118 TINCRA0A1B0GVN0 87 aa12.17□□□□□ -0.46
SHROOM1-204ENST00000440118 TSTD3H0UI37 97 aa12.17□□□□□ -0.46
SHROOM1-204ENST00000440118 IGLV7-43P04211 117 aa12.17□□□□□ -0.46
SHROOM1-204ENST00000440118 PMCHL1Q16048 86 aa12.17□□□□□ -0.46
SHROOM1-204ENST00000440118 C9orf129Q5T035 196 aaKnown RBP12.17□□□□□ -0.46
SHROOM1-204ENST00000440118 DIRC1Q969H9 104 aa12.17□□□□□ -0.46
SHROOM1-204ENST00000440118 TNXBP22105 4242 aa12.16□□□□□ -0.46
SHROOM1-204ENST00000440118 UBR4Q5T4S7 5183 aa12.16□□□□□ -0.46
SHROOM1-204ENST00000440118 PMVKQ15126 192 aa12.16□□□□□ -0.46
SHROOM1-204ENST00000440118 LINC01546A6NGU7 62 aa12.15□□□□□ -0.46
SHROOM1-204ENST00000440118 NUPR1O60356 82 aa12.15□□□□□ -0.46
SHROOM1-204ENST00000440118 LEPROTL1O95214 131 aa12.15□□□□□ -0.46
SHROOM1-204ENST00000440118 COX7B2Q8TF08 81 aa12.15□□□□□ -0.46
SHROOM1-204ENST00000440118 MAP1LC3CQ9BXW4 147 aa12.15□□□□□ -0.46
SHROOM1-204ENST00000440118 CST9LQ9H4G1 147 aa12.15□□□□□ -0.46
SHROOM1-204ENST00000440118 XAGE1AQ9HD64 81 aa12.15□□□□□ -0.46
SHROOM1-204ENST00000440118 SMIM1B2RUZ4 78 aa12.14□□□□□ -0.47
SHROOM1-204ENST00000440118 LINC00310P59036 64 aa12.14□□□□□ -0.47
SHROOM1-204ENST00000440118 H3BRM9 83 aa12.13□□□□□ -0.47
SHROOM1-204ENST00000440118 SPINK8P0C7L1 97 aa12.13□□□□□ -0.47
SHROOM1-204ENST00000440118 KRTDAPP60985 99 aa12.13□□□□□ -0.47
SHROOM1-204ENST00000440118 KRTAP11-1Q8IUC1 163 aa12.12□□□□□ -0.47
SHROOM1-204ENST00000440118 KRTAP7-1Q8IUC3 87 aa12.12□□□□□ -0.47
SHROOM1-204ENST00000440118 IGLV5-45A0A087WSX0 123 aa12.11□□□□□ -0.47
SHROOM1-204ENST00000440118 KRTAP10-8P60410 259 aa12.11□□□□□ -0.47
SHROOM1-204ENST00000440118 ODF1Q14990 250 aa12.11□□□□□ -0.47
SHROOM1-204ENST00000440118 PET117Q6UWS5 81 aa12.11□□□□□ -0.47
SHROOM1-204ENST00000440118 H0Y9J4 135 aa12.1□□□□□ -0.47
SHROOM1-204ENST00000440118 LBHQ53QV2 105 aaPredicted RBP12.1□□□□□ -0.47
SHROOM1-204ENST00000440118 HBDP02042 147 aa12.09□□□□□ -0.47
SHROOM1-204ENST00000440118 FAM19A2Q8N3H0 131 aa12.09□□□□□ -0.47
SHROOM1-204ENST00000440118 C22orf24Q9Y442 160 aa12.08□□□□□ -0.48
SHROOM1-204ENST00000440118 PCP4L1A6NKN8 68 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms