RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 DNAL4O96015 105 aa7.88□□□□□ -1.15
USP4-205ENST00000431357 SS18Q15532 418 aa7.88□□□□□ -1.15
USP4-205ENST00000431357 SMIM11BQ8TCY0 68 aa7.88□□□□□ -1.15
USP4-205ENST00000431357 C22orf24Q9Y442 160 aa7.88□□□□□ -1.15
USP4-205ENST00000431357 PLA2G2AP14555 144 aa7.88□□□□□ -1.15
USP4-205ENST00000431357 HILS1P60008 231 aa7.88□□□□□ -1.15
USP4-205ENST00000431357 AKAP9Q99996 3911 aa7.88□□□□□ -1.15
USP4-205ENST00000431357 C6orf226Q5I0X4 101 aa7.87□□□□□ -1.15
USP4-205ENST00000431357 USP24Q9UPU5 2620 aa7.87□□□□□ -1.15
USP4-205ENST00000431357 DEFB130BP0DP73 79 aa7.87□□□□□ -1.15
USP4-205ENST00000431357 DEFB130AP0DP74 79 aa7.87□□□□□ -1.15
USP4-205ENST00000431357 GYPEP15421 78 aa7.86□□□□□ -1.15
USP4-205ENST00000431357 Q8IZM0 81 aa7.86□□□□□ -1.15
USP4-205ENST00000431357 C1orf43Q9BWL3 253 aa7.86□□□□□ -1.15
USP4-205ENST00000431357 Q9HAA7 133 aa7.86□□□□□ -1.15
USP4-205ENST00000431357 WNK1Q9H4A3 2382 aa7.86□□□□□ -1.15
USP4-205ENST00000431357 ABCA12Q86UK0 2595 aa7.86□□□□□ -1.15
USP4-205ENST00000431357 hADV29S1A0JD25 119 aa7.85□□□□□ -1.15
USP4-205ENST00000431357 PAX4O43316 350 aa7.85□□□□□ -1.15
USP4-205ENST00000431357 PFN2P35080 140 aa7.85□□□□□ -1.15
USP4-205ENST00000431357 PRO0255Q9UI72 69 aa7.85□□□□□ -1.15
USP4-205ENST00000431357 CHD6Q8TD26 2715 aa7.85□□□□□ -1.15
USP4-205ENST00000431357 SERP2Q8N6R1 65 aa7.85□□□□□ -1.15
USP4-205ENST00000431357 A0A087WYN8 130 aa7.84□□□□□ -1.15
USP4-205ENST00000431357 LY6G6DO95868 133 aa7.84□□□□□ -1.15
USP4-205ENST00000431357 SMCR5Q8TEV8 140 aa7.84□□□□□ -1.15
USP4-205ENST00000431357 NDUFC2O95298 119 aa7.84□□□□□ -1.16
USP4-205ENST00000431357 XCL1P47992 114 aa7.83□□□□□ -1.16
USP4-205ENST00000431357 RPL18AQ02543 176 aaKnown RBP7.83□□□□□ -1.16
USP4-205ENST00000431357 CENPEQ02224 2701 aa7.83□□□□□ -1.16
USP4-205ENST00000431357 ITPR3Q14573 2671 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 LYRM9A8MSI8 78 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 EPM2AB3EWF7 344 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 LINC00482Q8N8I6 264 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 OBSCN-AS1Q96MR7 158 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 UPK3BQ9BT76 320 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 X6R8D5 127 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 EPG5Q9HCE0 2579 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 ZFYVE26Q68DK2 2539 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 OXTP01178 125 aa7.82□□□□□ -1.16
USP4-205ENST00000431357 COX17Q14061 63 aa7.81□□□□□ -1.16
USP4-205ENST00000431357 LECT2O14960 151 aa7.81□□□□□ -1.16
USP4-205ENST00000431357 TLN2Q9Y4G6 2542 aa7.8□□□□□ -1.16
USP4-205ENST00000431357 SONP18583 2426 aaKnown RBP7.8□□□□□ -1.16
USP4-205ENST00000431357 CD164L2Q6UWJ8 174 aa7.8□□□□□ -1.16
USP4-205ENST00000431357 APCP25054 2843 aa7.8□□□□□ -1.16
USP4-205ENST00000431357 NOTCH3Q9UM47 2321 aa7.8□□□□□ -1.16
USP4-205ENST00000431357 DSCR8Q96T75 97 aa7.79□□□□□ -1.16
USP4-205ENST00000431357 C11orf68Q9H3H3 251 aaKnown RBP7.79□□□□□ -1.16
USP4-205ENST00000431357 ORMDL1Q9P0S3 153 aa7.79□□□□□ -1.16
USP4-205ENST00000431357 LINC00336Q6ZUF6 198 aa7.79□□□□□ -1.16
USP4-205ENST00000431357 KRTAP10-3P60369 221 aa7.78□□□□□ -1.16
USP4-205ENST00000431357 LINC00167Q96N53 147 aa7.78□□□□□ -1.16
USP4-205ENST00000431357 SERP1Q9Y6X1 66 aa7.78□□□□□ -1.16
USP4-205ENST00000431357 C2CD3Q4AC94 2353 aa7.78□□□□□ -1.16
USP4-205ENST00000431357 ZNF469Q96JG9 3925 aaPredicted RBP7.78□□□□□ -1.16
USP4-205ENST00000431357 IGHV4-28A0A0C4DH34 117 aa7.78□□□□□ -1.16
USP4-205ENST00000431357 KIAA0087Q14695 138 aa7.78□□□□□ -1.16
USP4-205ENST00000431357 C9orf66Q5T8R8 295 aa7.78□□□□□ -1.16
USP4-205ENST00000431357 C14orf132Q9NPU4 83 aa7.78□□□□□ -1.16
USP4-205ENST00000431357 C1orf195Q5TG92 126 aa7.77□□□□□ -1.17
USP4-205ENST00000431357 ANK3Q12955 4377 aaKnown RBP7.77□□□□□ -1.17
USP4-205ENST00000431357 CLPSL2Q6UWE3 100 aa7.76□□□□□ -1.17
USP4-205ENST00000431357 LINC00269Q8N2A0 174 aa7.76□□□□□ -1.17
USP4-205ENST00000431357 MUC7Q8TAX7 377 aa7.76□□□□□ -1.17
USP4-205ENST00000431357 CHCHD10Q8WYQ3 142 aaPredicted RBP7.76□□□□□ -1.17
USP4-205ENST00000431357 A0A096LPF7 62 aa7.76□□□□□ -1.17
USP4-205ENST00000431357 Q6JHZ5 121 aa7.76□□□□□ -1.17
USP4-205ENST00000431357 SETXQ7Z333 2677 aaKnown RBP7.76□□□□□ -1.17
USP4-205ENST00000431357 JMJD7-PLA2G4BH0Y9G9 81 aa7.75□□□□□ -1.17
USP4-205ENST00000431357 APOC4P55056 127 aa7.75□□□□□ -1.17
USP4-205ENST00000431357 REG3AQ06141 175 aa7.75□□□□□ -1.17
USP4-205ENST00000431357 C9orf129Q5T035 196 aaKnown RBP7.75□□□□□ -1.17
USP4-205ENST00000431357 FLNAP21333 2647 aaKnown RBP7.75□□□□□ -1.17
USP4-205ENST00000431357 ANGP03950 147 aaKnown RBP7.75□□□□□ -1.17
USP4-205ENST00000431357 NANOS2P60321 138 aaKnown RBP7.75□□□□□ -1.17
USP4-205ENST00000431357 KMT2BQ9UMN6 2715 aaPredicted RBP7.75□□□□□ -1.17
USP4-205ENST00000431357 SMIM26A0A096LP01 95 aa7.74□□□□□ -1.17
USP4-205ENST00000431357 TMEM256-PLSCR3K7ERE1 68 aa7.74□□□□□ -1.17
USP4-205ENST00000431357 DAD1P61803 113 aa7.74□□□□□ -1.17
USP4-205ENST00000431357 Q8N814 137 aa7.74□□□□□ -1.17
USP4-205ENST00000431357 JMJD1CQ15652 2540 aa7.74□□□□□ -1.17
USP4-205ENST00000431357 NCR3O14931 201 aa7.73□□□□□ -1.17
USP4-205ENST00000431357 SLPIP03973 132 aa7.73□□□□□ -1.17
USP4-205ENST00000431357 PKIGQ9Y2B9 76 aa7.73□□□□□ -1.17
USP4-205ENST00000431357 CCKP06307 115 aa7.73□□□□□ -1.17
USP4-205ENST00000431357 S100A7L2Q5SY68 101 aa7.72□□□□□ -1.17
USP4-205ENST00000431357 CYSTM1Q9H1C7 97 aa7.72□□□□□ -1.17
USP4-205ENST00000431357 LINC00846Q9NV44 126 aa7.72□□□□□ -1.17
USP4-205ENST00000431357 CCDC168Q8NDH2 2452 aa7.72□□□□□ -1.17
USP4-205ENST00000431357 FAM236DA0A1B0GTK5 79 aa7.72□□□□□ -1.17
USP4-205ENST00000431357 FAM236CP0DP71 79 aa7.72□□□□□ -1.17
USP4-205ENST00000431357 MIFP14174 115 aa7.72□□□□□ -1.17
USP4-205ENST00000431357 DEFB135Q30KP9 77 aa7.72□□□□□ -1.17
USP4-205ENST00000431357 J3QKU1 62 aa7.71□□□□□ -1.18
USP4-205ENST00000431357 IGLV10-54A0A075B6I4 117 aa7.7□□□□□ -1.18
USP4-205ENST00000431357 PRR3P79522 188 aaKnown RBP7.7□□□□□ -1.18
USP4-205ENST00000431357 LELP1Q5T871 98 aa7.7□□□□□ -1.18
USP4-205ENST00000431357 NF1P21359 2839 aa7.7□□□□□ -1.18
USP4-205ENST00000431357 BCE1O60756 84 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms