RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 Q8N8P6 123 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 MAP1LC3AQ9H492 121 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 NXT2Q9NPJ8 142 aaKnown RBP1.6□□□□□ -2.15
VPS13A-208ENST00000423463 CDC42SE2Q9NRR3 84 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 VPS13DQ5THJ4 4388 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 IGLV8-61A0A075B6I0 122 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 LINC00959A0A1B0GUT2 108 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 MRPS36P82909 103 aaKnown RBP1.6□□□□□ -2.15
VPS13A-208ENST00000423463 WFDC2Q14508 124 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 SS18Q15532 418 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 CHCHD10Q8WYQ3 142 aaPredicted RBP1.6□□□□□ -2.15
VPS13A-208ENST00000423463 SPANXA1Q9NS26 97 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 UBE2D4Q9Y2X8 147 aa1.6□□□□□ -2.15
VPS13A-208ENST00000423463 SACSQ9NZJ4 4579 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 IGLV10-54A0A075B6I4 117 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 IGKV3OR2-268A0A0C4DH90 116 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 LOC389332A0A1B0GUA5 103 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 LINC01549A6NIU2 74 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 C1orf196B1AJZ1 125 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 LECT2O14960 151 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 FABP9Q0Z7S8 132 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 ORMDL2Q53FV1 153 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 CLPSL2Q6UWE3 100 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 OBSCNQ5VST9 7968 aa1.59□□□□□ -2.15
VPS13A-208ENST00000423463 DNAH6Q9C0G6 4158 aa1.59□□□□□ -2.16
VPS13A-208ENST00000423463 SERF1AO75920 110 aa1.59□□□□□ -2.16
VPS13A-208ENST00000423463 IFI27P40305 119 aaPredicted RBP1.59□□□□□ -2.16
VPS13A-208ENST00000423463 KRTAP10-1P60331 282 aa1.59□□□□□ -2.16
VPS13A-208ENST00000423463 SMCO4Q9NRQ5 59 aa1.59□□□□□ -2.16
VPS13A-208ENST00000423463 CYSLTR1Q9Y271 337 aa1.59□□□□□ -2.16
VPS13A-208ENST00000423463 TRAPPC1Q9Y5R8 145 aa1.59□□□□□ -2.16
VPS13A-208ENST00000423463 HYDINQ4G0P3 5121 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.58□□□□□ -2.16
VPS13A-208ENST00000423463 TGIF2-C20orf24A0A0A6YYL0 155 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 IGHV1-58A0A0C4DH39 117 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 A0A1B0GWB2 263 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 LINC01546A6NGU7 62 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 FUSP35637 526 aaKnown RBP eCLIP1.58□□□□□ -2.16
VPS13A-208ENST00000423463 HNRNPA3P51991 378 aaKnown RBP1.58□□□□□ -2.16
VPS13A-208ENST00000423463 RPL39P62891 51 aaKnown RBP1.58□□□□□ -2.16
VPS13A-208ENST00000423463 C9orf163Q8N9P6 203 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 FAM104AQ969W3 186 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.58□□□□□ -2.16
VPS13A-208ENST00000423463 TRAV13-1A0A0B4J241 112 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 IGIPA6NJ69 53 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 COX7A2LO14548 114 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 SCO1O75880 301 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 APOMO95445 188 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 S100A1P23297 94 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 XCL1P47992 114 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 RAB5BP61020 215 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 CNBPP62633 177 aaKnown RBP1.58□□□□□ -2.16
VPS13A-208ENST00000423463 Q6ZUT4 128 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 FA2HQ7L5A8 372 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 TOMM6Q96B49 74 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 TMEM141Q96I45 108 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 YPEL4Q96NS1 127 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 VCX2Q9H322 139 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 LYSTQ99698 3801 aa1.58□□□□□ -2.16
VPS13A-208ENST00000423463 GVQW2A0A096LPI5 108 aaPredicted RBP1.57□□□□□ -2.16
VPS13A-208ENST00000423463 IGHV3OR16-9A0A0B4J2B5 98 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 LINC00614P0C842 121 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 SEC11AP67812 179 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 RNASE13Q5GAN3 156 aaKnown RBP1.57□□□□□ -2.16
VPS13A-208ENST00000423463 Q6ZN92 141 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 TEX43Q6ZNM6 134 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 SDIM1Q6ZPB5 146 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 Q6ZSA8 131 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 CBLN2Q8IUK8 224 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 C15orf56Q8N910 161 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 SCGB3A1Q96QR1 104 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 AMELXQ99217 191 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 TIMM17AQ99595 171 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 PKIGQ9Y2B9 76 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 IGHV3-64A0A075B6Q5 118 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 FAM19A3Q7Z5A8 133 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 C5orf38Q86SI9 138 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 OR10D4PQ8NGN7 298 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 C18orf32Q8TCD1 76 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 C2orf88Q9BSF0 95 aa1.57□□□□□ -2.16
VPS13A-208ENST00000423463 KMT2AQ03164 3969 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 SYNE2Q8WXH0 6885 aaKnown RBP1.56□□□□□ -2.16
VPS13A-208ENST00000423463 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-208ENST00000423463 UBE2D1P51668 147 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 SYCNQ0VAF6 134 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 LINC00173Q6ZV60 143 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 CHCHD1Q96BP2 118 aaKnown RBP1.56□□□□□ -2.16
VPS13A-208ENST00000423463 CHAC1Q9BUX1 264 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 DNAH10Q8IVF4 4471 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 DNAH17Q9UFH2 4485 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 IGLV4-69A0A075B6H9 119 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 COLCA2A8K830 154 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 ATP5LO75964 103 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 HBDP02042 147 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 HERVK_113P63121 156 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 COX6A2Q02221 97 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 CIRBPQ14011 172 aaKnown RBP1.56□□□□□ -2.16
VPS13A-208ENST00000423463 PMVKQ15126 192 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 MTURNQ8N3F0 131 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 ORAOV1Q8WV07 137 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms