RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TLX1NBP0CAT3 122 aa4.82□□□□□ -1.64
VIM-202ENST00000421459 UBE2D1P51668 147 aa4.82□□□□□ -1.64
VIM-202ENST00000421459 KIAA1644Q3SXP7 199 aa4.82□□□□□ -1.64
VIM-202ENST00000421459 ZC2HC1BQ5TFG8 222 aa4.82□□□□□ -1.64
VIM-202ENST00000421459 TMEM18Q96B42 140 aa4.82□□□□□ -1.64
VIM-202ENST00000421459 LAMTOR2Q9Y2Q5 125 aa4.82□□□□□ -1.64
VIM-202ENST00000421459 D6R8Y8 96 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 PPP1R17O96001 155 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 NPYP01303 97 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 CKS2P33552 79 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 SMAGPQ0VAQ4 97 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 ORMDL3Q8N138 153 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 LINC00469Q8N7U9 141 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 C18orf32Q8TCD1 76 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 C20orf78Q9BR46 151 aa4.81□□□□□ -1.64
VIM-202ENST00000421459 LOC100996750A0A140TA64 210 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 C5orf52A6NGY3 159 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 PRSS47A8MTI9 375 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 LINC00310P59036 64 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 MRPS36P82909 103 aaKnown RBP4.8□□□□□ -1.64
VIM-202ENST00000421459 LINC00242Q5T6M2 205 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 PRELID3AQ96N28 172 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 SMIM2Q9BVW6 85 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 KRTAP4-6Q9BYQ5 205 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 SPANXA1Q9NS26 97 aa4.8□□□□□ -1.64
VIM-202ENST00000421459 IGLV4-3A0A075B6K6 122 aa4.79□□□□□ -1.64
VIM-202ENST00000421459 LINC01546A6NGU7 62 aa4.79□□□□□ -1.64
VIM-202ENST00000421459 F8WDY8 70 aa4.79□□□□□ -1.64
VIM-202ENST00000421459 S100A6P06703 90 aa4.79□□□□□ -1.64
VIM-202ENST00000421459 NDUFA6P56556 154 aa4.79□□□□□ -1.64
VIM-202ENST00000421459 RPL32P62910 135 aaKnown RBP4.79□□□□□ -1.64
VIM-202ENST00000421459 URB1-AS1Q96HZ7 61 aa4.79□□□□□ -1.64
VIM-202ENST00000421459 ANAPC11Q9NYG5 84 aa4.79□□□□□ -1.64
VIM-202ENST00000421459 C22orf24Q9Y442 160 aa4.79□□□□□ -1.64
VIM-202ENST00000421459 A0A087X002 238 aa4.78□□□□□ -1.64
VIM-202ENST00000421459 NDUFC2-KCTD14E9PQ53 114 aa4.78□□□□□ -1.64
VIM-202ENST00000421459 ZNF861PO60384 105 aa4.78□□□□□ -1.64
VIM-202ENST00000421459 SERF1AO75920 110 aa4.78□□□□□ -1.64
VIM-202ENST00000421459 SNRPEP62304 92 aaKnown RBP4.78□□□□□ -1.64
VIM-202ENST00000421459 HIST3H2BBQ8N257 126 aa4.78□□□□□ -1.64
VIM-202ENST00000421459 XAGE1AQ9HD64 81 aa4.78□□□□□ -1.64
VIM-202ENST00000421459 TRBV30A0A0K0K1B3 111 aa4.77□□□□□ -1.65
VIM-202ENST00000421459 LOC389332A0A1B0GUA5 103 aa4.77□□□□□ -1.65
VIM-202ENST00000421459 NUPR1O60356 82 aa4.77□□□□□ -1.65
VIM-202ENST00000421459 RPL13AP40429 203 aaKnown RBP4.77□□□□□ -1.65
VIM-202ENST00000421459 LCE2AQ5TA79 106 aaPredicted RBP4.77□□□□□ -1.65
VIM-202ENST00000421459 BAGE3Q86Y29 109 aa4.77□□□□□ -1.65
VIM-202ENST00000421459 CHCHD1Q96BP2 118 aaKnown RBP4.77□□□□□ -1.65
VIM-202ENST00000421459 PACRGQ96M98 296 aaPredicted RBP4.77□□□□□ -1.65
VIM-202ENST00000421459 MAP1LC3AQ9H492 121 aa4.77□□□□□ -1.65
VIM-202ENST00000421459 TOMM7Q9P0U1 55 aa4.77□□□□□ -1.65
VIM-202ENST00000421459 LOC105371267A0A1B0GV96 52 aa4.76□□□□□ -1.65
VIM-202ENST00000421459 K7EMI3 77 aa4.76□□□□□ -1.65
VIM-202ENST00000421459 LINC00614P0C842 121 aa4.76□□□□□ -1.65
VIM-202ENST00000421459 IFI27P40305 119 aaPredicted RBP4.76□□□□□ -1.65
VIM-202ENST00000421459 LINC00173Q6ZV60 143 aa4.76□□□□□ -1.65
VIM-202ENST00000421459 Q8N8P6 123 aa4.76□□□□□ -1.65
VIM-202ENST00000421459 RETNLBQ9BQ08 111 aa4.76□□□□□ -1.65
VIM-202ENST00000421459 NXT2Q9NPJ8 142 aaKnown RBP4.76□□□□□ -1.65
VIM-202ENST00000421459 TMEM141Q96I45 108 aa4.75□□□□□ -1.65
VIM-202ENST00000421459 HIST1H2BLQ99880 126 aa4.75□□□□□ -1.65
VIM-202ENST00000421459 PYGO1Q9Y3Y4 419 aa4.75□□□□□ -1.65
VIM-202ENST00000421459 A0A096LNJ9 63 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 RPL37AP8A6NKH3 93 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 HSBP1O75506 76 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 CKS1BP61024 79 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 KRTAP13-2Q52LG2 175 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 C6orf226Q5I0X4 101 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 TEX43Q6ZNM6 134 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 FA2HQ7L5A8 372 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 TYMSOSQ8TAI1 123 aa4.74□□□□□ -1.65
VIM-202ENST00000421459 A0A0U1RQV1 116 aa4.73□□□□□ -1.65
VIM-202ENST00000421459 GAGE10A6NGK3 116 aa4.73□□□□□ -1.65
VIM-202ENST00000421459 PRSS2P07478 247 aa4.73□□□□□ -1.65
VIM-202ENST00000421459 PDZD11Q5EBL8 140 aa4.73□□□□□ -1.65
VIM-202ENST00000421459 Q6ZN92 141 aa4.73□□□□□ -1.65
VIM-202ENST00000421459 AMELXQ99217 191 aa4.73□□□□□ -1.65
VIM-202ENST00000421459 KRTAP9-6A0A140TA67 174 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 BCE1O60756 84 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 FABP4P15090 132 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 S100A2P29034 98 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 ORMDL2Q53FV1 153 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 LBHQ53QV2 105 aaPredicted RBP4.72□□□□□ -1.65
VIM-202ENST00000421459 C2orf66Q6UXQ4 117 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 MRPL55Q7Z7F7 128 aaKnown RBP4.72□□□□□ -1.65
VIM-202ENST00000421459 LINC01561Q8N1V8 128 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 FAM19A2Q8N3H0 131 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 LINC00167Q96N53 147 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 VCX2Q9H322 139 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 CDKN2A-AS1Q9UH64 79 aa4.72□□□□□ -1.65
VIM-202ENST00000421459 IGIPA6NJ69 53 aa4.71□□□□□ -1.66
VIM-202ENST00000421459 HBDP02042 147 aa4.71□□□□□ -1.66
VIM-202ENST00000421459 CRYGAP11844 174 aa4.71□□□□□ -1.66
VIM-202ENST00000421459 RPL28P46779 137 aaKnown RBP4.71□□□□□ -1.66
VIM-202ENST00000421459 PMCHL1Q16048 86 aa4.71□□□□□ -1.66
VIM-202ENST00000421459 Q8IZM0 81 aa4.71□□□□□ -1.66
VIM-202ENST00000421459 C2orf88Q9BSF0 95 aa4.71□□□□□ -1.66
VIM-202ENST00000421459 LINC01549A6NIU2 74 aa4.7□□□□□ -1.66
VIM-202ENST00000421459 G0S2P27469 103 aa4.7□□□□□ -1.66
VIM-202ENST00000421459 TOMM6Q96B49 74 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms