RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 LINC01546A6NGU7 62 aa7.64□□□□□ -1.19
LINC00339-203ENST00000420503 UBE2D1P51668 147 aa7.64□□□□□ -1.19
LINC00339-203ENST00000420503 UBE2BP63146 152 aa7.64□□□□□ -1.19
LINC00339-203ENST00000420503 KIAA0087Q14695 138 aa7.64□□□□□ -1.19
LINC00339-203ENST00000420503 TLX1NBP0CAT3 122 aa7.63□□□□□ -1.19
LINC00339-203ENST00000420503 SMAGPQ0VAQ4 97 aa7.63□□□□□ -1.19
LINC00339-203ENST00000420503 ORMDL2Q53FV1 153 aa7.63□□□□□ -1.19
LINC00339-203ENST00000420503 SPANXA1Q9NS26 97 aa7.63□□□□□ -1.19
LINC00339-203ENST00000420503 PYGO1Q9Y3Y4 419 aa7.63□□□□□ -1.19
LINC00339-203ENST00000420503 IFITM10A6NMD0 228 aa7.62□□□□□ -1.19
LINC00339-203ENST00000420503 MRPS36P82909 103 aaKnown RBP7.62□□□□□ -1.19
LINC00339-203ENST00000420503 C18orf32Q8TCD1 76 aa7.62□□□□□ -1.19
LINC00339-203ENST00000420503 A0A087X002 238 aa7.61□□□□□ -1.19
LINC00339-203ENST00000420503 COLCA2A8K830 154 aa7.61□□□□□ -1.19
LINC00339-203ENST00000420503 ZC2HC1BQ5TFG8 222 aa7.61□□□□□ -1.19
LINC00339-203ENST00000420503 C2orf66Q6UXQ4 117 aa7.61□□□□□ -1.19
LINC00339-203ENST00000420503 URB1-AS1Q96HZ7 61 aa7.61□□□□□ -1.19
LINC00339-203ENST00000420503 SCO1O75880 301 aa7.6□□□□□ -1.19
LINC00339-203ENST00000420503 CYSLTR1Q9Y271 337 aa7.6□□□□□ -1.19
LINC00339-203ENST00000420503 IGLV4-3A0A075B6K6 122 aa7.59□□□□□ -1.19
LINC00339-203ENST00000420503 KRTAP9-6A0A140TA67 174 aa7.59□□□□□ -1.19
LINC00339-203ENST00000420503 IGIPA6NJ69 53 aa7.59□□□□□ -1.19
LINC00339-203ENST00000420503 LINC00242Q5T6M2 205 aa7.59□□□□□ -1.19
LINC00339-203ENST00000420503 LINC00469Q8N7U9 141 aa7.59□□□□□ -1.19
LINC00339-203ENST00000420503 TOMM6Q96B49 74 aa7.59□□□□□ -1.19
LINC00339-203ENST00000420503 ANAPC11Q9NYG5 84 aa7.59□□□□□ -1.19
LINC00339-203ENST00000420503 TRGC2P03986 189 aa7.58□□□□□ -1.2
LINC00339-203ENST00000420503 NPSP0C0P6 89 aa7.58□□□□□ -1.2
LINC00339-203ENST00000420503 RETNLBQ9BQ08 111 aa7.58□□□□□ -1.2
LINC00339-203ENST00000420503 A0A096LNJ9 63 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 ZNF861PO60384 105 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 G0S2P27469 103 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 RPL13AP40429 203 aaKnown RBP7.57□□□□□ -1.2
LINC00339-203ENST00000420503 LINC00173Q6ZV60 143 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 FA2HQ7L5A8 372 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 TMEM141Q96I45 108 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 TIMM17AQ99595 171 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 XAGE1AQ9HD64 81 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 MUC17Q685J3 4493 aa7.57□□□□□ -1.2
LINC00339-203ENST00000420503 NDUFC2-KCTD14E9PQ53 114 aa7.56□□□□□ -1.2
LINC00339-203ENST00000420503 F8WDY8 70 aa7.56□□□□□ -1.2
LINC00339-203ENST00000420503 LINC00614P0C842 121 aa7.56□□□□□ -1.2
LINC00339-203ENST00000420503 AMELXQ99217 191 aa7.56□□□□□ -1.2
LINC00339-203ENST00000420503 LINC01549A6NIU2 74 aa7.55□□□□□ -1.2
LINC00339-203ENST00000420503 ERASQ7Z444 233 aa7.55□□□□□ -1.2
LINC00339-203ENST00000420503 C22orf24Q9Y442 160 aa7.55□□□□□ -1.2
LINC00339-203ENST00000420503 TRBV30A0A0K0K1B3 111 aa7.54□□□□□ -1.2
LINC00339-203ENST00000420503 A0A0U1RQV1 116 aa7.54□□□□□ -1.2
LINC00339-203ENST00000420503 ATP6V1G1O75348 118 aa7.54□□□□□ -1.2
LINC00339-203ENST00000420503 TEX43Q6ZNM6 134 aa7.54□□□□□ -1.2
LINC00339-203ENST00000420503 RAB5BP61020 215 aa7.53□□□□□ -1.2
LINC00339-203ENST00000420503 FAM19A3Q7Z5A8 133 aa7.53□□□□□ -1.2
LINC00339-203ENST00000420503 SCGB3A1Q96QR1 104 aa7.53□□□□□ -1.2
LINC00339-203ENST00000420503 S100A1P23297 94 aa7.52□□□□□ -1.21
LINC00339-203ENST00000420503 LINC00310P59036 64 aa7.52□□□□□ -1.21
LINC00339-203ENST00000420503 PMCHL1Q16048 86 aa7.52□□□□□ -1.21
LINC00339-203ENST00000420503 KRTAP13-2Q52LG2 175 aa7.52□□□□□ -1.21
LINC00339-203ENST00000420503 Q6ZN92 141 aa7.52□□□□□ -1.21
LINC00339-203ENST00000420503 CHCHD1Q96BP2 118 aaKnown RBP7.52□□□□□ -1.21
LINC00339-203ENST00000420503 PACRGQ96M98 296 aaPredicted RBP7.52□□□□□ -1.21
LINC00339-203ENST00000420503 VCX2Q9H322 139 aa7.52□□□□□ -1.21
LINC00339-203ENST00000420503 TOMM7Q9P0U1 55 aa7.52□□□□□ -1.21
LINC00339-203ENST00000420503 HBDP02042 147 aa7.51□□□□□ -1.21
LINC00339-203ENST00000420503 PDZD11Q5EBL8 140 aa7.51□□□□□ -1.21
LINC00339-203ENST00000420503 PAPPA-AS1Q5QFB9 102 aa7.51□□□□□ -1.21
LINC00339-203ENST00000420503 C2orf88Q9BSF0 95 aa7.51□□□□□ -1.21
LINC00339-203ENST00000420503 RPL37AP8A6NKH3 93 aa7.5□□□□□ -1.21
LINC00339-203ENST00000420503 TYMSOSQ8TAI1 123 aa7.5□□□□□ -1.21
LINC00339-203ENST00000420503 GAGE10A6NGK3 116 aa7.48□□□□□ -1.21
LINC00339-203ENST00000420503 NUPR1O60356 82 aa7.48□□□□□ -1.21
LINC00339-203ENST00000420503 BAGE3Q86Y29 109 aa7.48□□□□□ -1.21
LINC00339-203ENST00000420503 CST9LQ9H4G1 147 aa7.48□□□□□ -1.21
LINC00339-203ENST00000420503 BCE1O60756 84 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BKO60814 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 SERF1AO75920 110 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BJP06899 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 CRYGAP11844 174 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BOP23527 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BBP33778 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BDP58876 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BCP62807 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 PMVKQ15126 192 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST2H2BEQ16778 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.47□□□□□ -1.21
LINC00339-203ENST00000420503 MRPL55Q7Z7F7 128 aaKnown RBP7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BHQ93079 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BNQ99877 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HIST1H2BMQ99879 126 aa7.47□□□□□ -1.21
LINC00339-203ENST00000420503 HSBP1O75506 76 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 ATP5LO75964 103 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 PRSS2P07478 247 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 CKS1BP61024 79 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 HERVK_113P63121 156 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 SEC11AP67812 179 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 LINC01561Q8N1V8 128 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 FAM19A2Q8N3H0 131 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 LINC00167Q96N53 147 aa7.46□□□□□ -1.22
LINC00339-203ENST00000420503 IGLV5-45A0A087WSX0 123 aa7.45□□□□□ -1.22
LINC00339-203ENST00000420503 TINCRA0A1B0GVN0 87 aa7.45□□□□□ -1.22
LINC00339-203ENST00000420503 RPL28P46779 137 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms