RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 C14orf132Q9NPU4 83 aa6.82□□□□□ -1.32
CD44-206ENST00000415148 LY6G6DO95868 133 aa6.82□□□□□ -1.32
CD44-206ENST00000415148 FN1P02751 2386 aaKnown RBP6.81□□□□□ -1.32
CD44-206ENST00000415148 NBEAL2Q6ZNJ1 2754 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 J3QKU1 62 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 SS18Q15532 418 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 C6orf226Q5I0X4 101 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 Q8IZM0 81 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 WFDC11Q8NEX6 87 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 LOC107984640A0A0U1RRK4 108 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 C9orf153Q5TBE3 101 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 C3orf22Q8N5N4 141 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 C2orf48Q96LS8 159 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 TMEM126AQ9H061 195 aa6.81□□□□□ -1.32
CD44-206ENST00000415148 C11orf68Q9H3H3 251 aaKnown RBP6.81□□□□□ -1.32
CD44-206ENST00000415148 IGKV3D-7A0A0C4DH55 119 aa6.8□□□□□ -1.32
CD44-206ENST00000415148 PFN2P35080 140 aa6.8□□□□□ -1.32
CD44-206ENST00000415148 A0A087WVE0 104 aa6.8□□□□□ -1.32
CD44-206ENST00000415148 A0A1B0GX51 115 aa6.8□□□□□ -1.32
CD44-206ENST00000415148 SMIM9A6NGZ8 99 aa6.8□□□□□ -1.32
CD44-206ENST00000415148 NCR3O14931 201 aa6.8□□□□□ -1.32
CD44-206ENST00000415148 PAX4O43316 350 aa6.8□□□□□ -1.32
CD44-206ENST00000415148 LINC00846Q9NV44 126 aa6.79□□□□□ -1.32
CD44-206ENST00000415148 GCN1Q92616 2671 aaKnown RBP6.79□□□□□ -1.32
CD44-206ENST00000415148 ITPR3Q14573 2671 aa6.79□□□□□ -1.32
CD44-206ENST00000415148 LECT2O14960 151 aa6.79□□□□□ -1.32
CD44-206ENST00000415148 APCP25054 2843 aa6.78□□□□□ -1.32
CD44-206ENST00000415148 CCDC168Q8NDH2 2452 aa6.78□□□□□ -1.32
CD44-206ENST00000415148 GYPEP15421 78 aa6.78□□□□□ -1.32
CD44-206ENST00000415148 COX17Q14061 63 aa6.78□□□□□ -1.32
CD44-206ENST00000415148 OR13C6PQ8NH95 151 aa6.78□□□□□ -1.32
CD44-206ENST00000415148 NDUFC2O95298 119 aa6.77□□□□□ -1.32
CD44-206ENST00000415148 PRR3P79522 188 aaKnown RBP6.77□□□□□ -1.32
CD44-206ENST00000415148 KRTAP1-1Q07627 177 aa6.77□□□□□ -1.32
CD44-206ENST00000415148 PRO0255Q9UI72 69 aa6.77□□□□□ -1.32
CD44-206ENST00000415148 UQCRQO14949 82 aa6.77□□□□□ -1.33
CD44-206ENST00000415148 DEFB130BP0DP73 79 aa6.77□□□□□ -1.33
CD44-206ENST00000415148 DEFB130AP0DP74 79 aa6.77□□□□□ -1.33
CD44-206ENST00000415148 HIST1H4AP62805 103 aaKnown RBP6.77□□□□□ -1.33
CD44-206ENST00000415148 LINC00526Q96FQ7 95 aa6.77□□□□□ -1.33
CD44-206ENST00000415148 LINC00167Q96N53 147 aa6.77□□□□□ -1.33
CD44-206ENST00000415148 FASNP49327 2511 aaKnown RBP6.77□□□□□ -1.33
CD44-206ENST00000415148 ORMDL1Q9P0S3 153 aa6.76□□□□□ -1.33
CD44-206ENST00000415148 hADV29S1A0JD25 119 aa6.76□□□□□ -1.33
CD44-206ENST00000415148 XCL1P47992 114 aa6.76□□□□□ -1.33
CD44-206ENST00000415148 Q6JHZ5 121 aa6.76□□□□□ -1.33
CD44-206ENST00000415148 ANK3Q12955 4377 aaKnown RBP6.76□□□□□ -1.33
CD44-206ENST00000415148 COX7CP15954 63 aa6.75□□□□□ -1.33
CD44-206ENST00000415148 HILS1P60008 231 aa6.75□□□□□ -1.33
CD44-206ENST00000415148 IGHV4-28A0A0C4DH34 117 aa6.75□□□□□ -1.33
CD44-206ENST00000415148 CLPSL2Q6UWE3 100 aa6.75□□□□□ -1.33
CD44-206ENST00000415148 CD164L2Q6UWJ8 174 aa6.75□□□□□ -1.33
CD44-206ENST00000415148 X6R8D5 127 aa6.75□□□□□ -1.33
CD44-206ENST00000415148 FLNAP21333 2647 aaKnown RBP6.74□□□□□ -1.33
CD44-206ENST00000415148 LYRM9A8MSI8 78 aa6.74□□□□□ -1.33
CD44-206ENST00000415148 JMJD7-PLA2G4BH0Y9G9 81 aa6.74□□□□□ -1.33
CD44-206ENST00000415148 ATOX1O00244 68 aa6.74□□□□□ -1.33
CD44-206ENST00000415148 KIAA0087Q14695 138 aa6.74□□□□□ -1.33
CD44-206ENST00000415148 WFDC9Q8NEX5 89 aa6.74□□□□□ -1.33
CD44-206ENST00000415148 CCKP06307 115 aa6.73□□□□□ -1.33
CD44-206ENST00000415148 MUC7Q8TAX7 377 aa6.73□□□□□ -1.33
CD44-206ENST00000415148 MTORP42345 2549 aa6.73□□□□□ -1.33
CD44-206ENST00000415148 TMEM256-PLSCR3K7ERE1 68 aa6.73□□□□□ -1.33
CD44-206ENST00000415148 NANOS2P60321 138 aaKnown RBP6.73□□□□□ -1.33
CD44-206ENST00000415148 CFAP161Q6P656 301 aa6.73□□□□□ -1.33
CD44-206ENST00000415148 Q8N814 137 aa6.73□□□□□ -1.33
CD44-206ENST00000415148 LINC00482Q8N8I6 264 aa6.73□□□□□ -1.33
CD44-206ENST00000415148 ACANP16112 2415 aa6.73□□□□□ -1.33
CD44-206ENST00000415148 A0A096LPF7 62 aa6.72□□□□□ -1.33
CD44-206ENST00000415148 S100A7L2Q5SY68 101 aa6.72□□□□□ -1.33
CD44-206ENST00000415148 Q8N3U1 123 aa6.72□□□□□ -1.33
CD44-206ENST00000415148 Q8NDZ9 215 aa6.72□□□□□ -1.33
CD44-206ENST00000415148 RPL18AQ02543 176 aaKnown RBP6.71□□□□□ -1.34
CD44-206ENST00000415148 CRYGAP11844 174 aa6.71□□□□□ -1.34
CD44-206ENST00000415148 LINC00269Q8N2A0 174 aa6.71□□□□□ -1.34
CD44-206ENST00000415148 VWFP04275 2813 aa6.7□□□□□ -1.34
CD44-206ENST00000415148 CHCHD10Q8WYQ3 142 aaPredicted RBP6.7□□□□□ -1.34
CD44-206ENST00000415148 UPK3BQ9BT76 320 aa6.7□□□□□ -1.34
CD44-206ENST00000415148 OXTP01178 125 aa6.69□□□□□ -1.34
CD44-206ENST00000415148 REG3AQ06141 175 aa6.69□□□□□ -1.34
CD44-206ENST00000415148 C9orf116Q5BN46 136 aaPredicted RBP6.69□□□□□ -1.34
CD44-206ENST00000415148 SPATA3Q8NHX4 192 aa6.69□□□□□ -1.34
CD44-206ENST00000415148 KRTAP10-3P60369 221 aa6.68□□□□□ -1.34
CD44-206ENST00000415148 C9orf66Q5T8R8 295 aa6.68□□□□□ -1.34
CD44-206ENST00000415148 ATP5EP2Q5VTU8 51 aa6.68□□□□□ -1.34
CD44-206ENST00000415148 UNC79Q9P2D8 2635 aa6.68□□□□□ -1.34
CD44-206ENST00000415148 USP17L23D6RBM5 183 aa6.68□□□□□ -1.34
CD44-206ENST00000415148 ANGP03950 147 aaKnown RBP6.68□□□□□ -1.34
CD44-206ENST00000415148 FAM19A5Q7Z5A7 132 aaPredicted RBP6.68□□□□□ -1.34
CD44-206ENST00000415148 HECTD1Q9ULT8 2610 aa6.68□□□□□ -1.34
CD44-206ENST00000415148 LYPD5Q6UWN5 251 aa6.67□□□□□ -1.34
CD44-206ENST00000415148 FAM19A1Q7Z5A9 133 aa6.67□□□□□ -1.34
CD44-206ENST00000415148 H3BQ85 93 aa6.67□□□□□ -1.34
CD44-206ENST00000415148 APOC4P55056 127 aa6.67□□□□□ -1.34
CD44-206ENST00000415148 IGLV10-54A0A075B6I4 117 aa6.66□□□□□ -1.34
CD44-206ENST00000415148 A0A0J9YWU9 116 aa6.66□□□□□ -1.34
CD44-206ENST00000415148 M0R2N4 97 aa6.66□□□□□ -1.34
CD44-206ENST00000415148 IGHV4-30-4P0DP06 118 aa6.66□□□□□ -1.34
CD44-206ENST00000415148 LINC00575Q6W349 94 aa6.66□□□□□ -1.34
CD44-206ENST00000415148 TRBV10-3A0A0K0K1G6 114 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms