RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 C11orf45Q8TAV5 145 aa9.41□□□□□ -0.9
COL6A3-206ENST00000409809 URB1-AS1Q96HZ7 61 aa9.4□□□□□ -0.9
COL6A3-206ENST00000409809 A0A1B0GU69 56 aa9.4□□□□□ -0.9
COL6A3-206ENST00000409809 FLG2Q5D862 2391 aaPredicted RBP9.4□□□□□ -0.91
COL6A3-206ENST00000409809 COL4A4P53420 1690 aaPredicted RBP9.4□□□□□ -0.91
COL6A3-206ENST00000409809 DEFB114Q30KQ6 69 aa9.4□□□□□ -0.91
COL6A3-206ENST00000409809 Q6ZPA2 131 aa9.4□□□□□ -0.91
COL6A3-206ENST00000409809 PRO0461Q9UI25 63 aa9.4□□□□□ -0.91
COL6A3-206ENST00000409809 A0A1B0GUV1 79 aa9.39□□□□□ -0.91
COL6A3-206ENST00000409809 DCANP1Q8TF63 244 aa9.39□□□□□ -0.91
COL6A3-206ENST00000409809 MUC22E2RYF6 1773 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-206ENST00000409809 IGKV2-28A0A075B6P5 120 aa9.39□□□□□ -0.91
COL6A3-206ENST00000409809 IGKV2D-28P01615 120 aa9.39□□□□□ -0.91
COL6A3-206ENST00000409809 PCSK5Q92824 1860 aa9.39□□□□□ -0.91
COL6A3-206ENST00000409809 C1orf64Q8NEQ6 169 aa9.38□□□□□ -0.91
COL6A3-206ENST00000409809 IGKV2-24A0A0C4DH68 120 aa9.38□□□□□ -0.91
COL6A3-206ENST00000409809 WIPF1O43516 503 aa9.38□□□□□ -0.91
COL6A3-206ENST00000409809 SPRNQ5BIV9 151 aa9.38□□□□□ -0.91
COL6A3-206ENST00000409809 CRIP3Q6Q6R5 217 aa9.38□□□□□ -0.91
COL6A3-206ENST00000409809 REG3GQ6UW15 175 aa9.38□□□□□ -0.91
COL6A3-206ENST00000409809 ATP11AUNQ6ZP68 121 aa9.38□□□□□ -0.91
COL6A3-206ENST00000409809 CHD8Q9HCK8 2581 aa9.37□□□□□ -0.91
COL6A3-206ENST00000409809 COL27A1Q8IZC6 1860 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-206ENST00000409809 IGLV2-18A0A075B6J9 118 aa9.37□□□□□ -0.91
COL6A3-206ENST00000409809 DEFB113Q30KQ7 82 aa9.37□□□□□ -0.91
COL6A3-206ENST00000409809 MTORP42345 2549 aa9.37□□□□□ -0.91
COL6A3-206ENST00000409809 IGHV4-61A0A0C4DH41 118 aa9.36□□□□□ -0.91
COL6A3-206ENST00000409809 KTN1-AS1Q86SY8 53 aa9.36□□□□□ -0.91
COL6A3-206ENST00000409809 ZNF843Q8N446 348 aa9.36□□□□□ -0.91
COL6A3-206ENST00000409809 ADAMTSL4-AS1Q5T5F5 129 aa9.35□□□□□ -0.91
COL6A3-206ENST00000409809 Q6ZTC4 211 aa9.35□□□□□ -0.91
COL6A3-206ENST00000409809 BRI3O95415 125 aa9.35□□□□□ -0.91
COL6A3-206ENST00000409809 C2orf48Q96LS8 159 aa9.35□□□□□ -0.91
COL6A3-206ENST00000409809 KPRPQ5T749 579 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-206ENST00000409809 ZNF702PQ9H963 129 aa9.34□□□□□ -0.91
COL6A3-206ENST00000409809 TSPEAR-AS2P59090 65 aa9.34□□□□□ -0.91
COL6A3-206ENST00000409809 CYSRT1A8MQ03 144 aa9.34□□□□□ -0.91
COL6A3-206ENST00000409809 C7orf65Q6ZTY9 151 aa9.33□□□□□ -0.92
COL6A3-206ENST00000409809 A0A096LNJ9 63 aa9.33□□□□□ -0.92
COL6A3-206ENST00000409809 ZFP36P26651 326 aaKnown RBP9.33□□□□□ -0.92
COL6A3-206ENST00000409809 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-206ENST00000409809 FASNP49327 2511 aaKnown RBP9.33□□□□□ -0.92
COL6A3-206ENST00000409809 KLKP1Q107X0 134 aa9.33□□□□□ -0.92
COL6A3-206ENST00000409809 ELOF1P60002 83 aaKnown RBP9.32□□□□□ -0.92
COL6A3-206ENST00000409809 ZNF580Q9UK33 172 aa9.32□□□□□ -0.92
COL6A3-206ENST00000409809 LOC100131303A0A0U1RQF7 123 aa9.32□□□□□ -0.92
COL6A3-206ENST00000409809 IGLV5-39A0A0G2JS06 123 aa9.31□□□□□ -0.92
COL6A3-206ENST00000409809 DEFB1P60022 68 aa9.3□□□□□ -0.92
COL6A3-206ENST00000409809 C11orf21Q9P2W6 132 aa9.29□□□□□ -0.92
COL6A3-206ENST00000409809 DEFB131BA0A096LNP1 70 aa9.29□□□□□ -0.92
COL6A3-206ENST00000409809 Q8N2B8 174 aa9.29□□□□□ -0.92
COL6A3-206ENST00000409809 C11orf72Q8NBR9 251 aa9.29□□□□□ -0.92
COL6A3-206ENST00000409809 PRR15Q8IV56 129 aa9.29□□□□□ -0.92
COL6A3-206ENST00000409809 TRAV10A0A0B4J240 114 aa9.28□□□□□ -0.92
COL6A3-206ENST00000409809 SPINK6Q6UWN8 80 aa9.28□□□□□ -0.92
COL6A3-206ENST00000409809 PRR9Q5T870 116 aa9.28□□□□□ -0.92
COL6A3-206ENST00000409809 LINC00337Q8N6G1 96 aa9.27□□□□□ -0.93
COL6A3-206ENST00000409809 TRAV22A0A0B4J277 110 aa9.27□□□□□ -0.93
COL6A3-206ENST00000409809 LINC00482Q8N8I6 264 aa9.27□□□□□ -0.93
COL6A3-206ENST00000409809 C6orf48Q9UBA6 75 aa9.27□□□□□ -0.93
COL6A3-206ENST00000409809 A0A096LNI7 61 aa9.26□□□□□ -0.93
COL6A3-206ENST00000409809 IGHV4-30-4P0DP06 118 aa9.26□□□□□ -0.93
COL6A3-206ENST00000409809 IGHV4-31P0DP07 118 aa9.26□□□□□ -0.93
COL6A3-206ENST00000409809 Q6YL49 198 aa9.26□□□□□ -0.93
COL6A3-206ENST00000409809 IGHV6-1A0A0B4J1U7 121 aa9.26□□□□□ -0.93
COL6A3-206ENST00000409809 IGLV5-45A0A087WSX0 123 aa9.26□□□□□ -0.93
COL6A3-206ENST00000409809 DNAJC9-AS1A6NH13 148 aa9.26□□□□□ -0.93
COL6A3-206ENST00000409809 OXLD1Q5BKU9 147 aa9.26□□□□□ -0.93
COL6A3-206ENST00000409809 SMCPP49901 116 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-206ENST00000409809 Q6ZSV7 163 aa9.25□□□□□ -0.93
COL6A3-206ENST00000409809 Q9BRP9 147 aa9.25□□□□□ -0.93
COL6A3-206ENST00000409809 IGLV1-40P01703 118 aa9.24□□□□□ -0.93
COL6A3-206ENST00000409809 LCA10Q71F78 164 aa9.24□□□□□ -0.93
COL6A3-206ENST00000409809 GAS8-AS1O95177 125 aa9.23□□□□□ -0.93
COL6A3-206ENST00000409809 SMIM29Q86T20 159 aa9.23□□□□□ -0.93
COL6A3-206ENST00000409809 Q6ZQT0 140 aa9.22□□□□□ -0.93
COL6A3-206ENST00000409809 LMO4P61968 165 aa9.22□□□□□ -0.93
COL6A3-206ENST00000409809 PCOTHQ58A44 107 aa9.21□□□□□ -0.93
COL6A3-206ENST00000409809 IGLV9-49A0A0B4J1Y8 123 aa9.21□□□□□ -0.93
COL6A3-206ENST00000409809 A0A087WSZ3 146 aa9.21□□□□□ -0.94
COL6A3-206ENST00000409809 MOBPQ13875 183 aa9.21□□□□□ -0.94
COL6A3-206ENST00000409809 PROK1P58294 105 aa9.2□□□□□ -0.94
COL6A3-206ENST00000409809 SPATA3Q8NHX4 192 aa9.2□□□□□ -0.94
COL6A3-206ENST00000409809 LOC101927531A0A1B0GV80 90 aa9.2□□□□□ -0.94
COL6A3-206ENST00000409809 UQCR11O14957 56 aa9.2□□□□□ -0.94
COL6A3-206ENST00000409809 FAM19A4Q96LR4 140 aa9.2□□□□□ -0.94
COL6A3-206ENST00000409809 C1orf229Q6ZS94 237 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-206ENST00000409809 DEFB4AO15263 64 aa9.2□□□□□ -0.94
COL6A3-206ENST00000409809 BBC3Q96PG8 261 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-206ENST00000409809 COX6A2Q02221 97 aa9.2□□□□□ -0.94
COL6A3-206ENST00000409809 SPINT4Q6UDR6 99 aa9.19□□□□□ -0.94
COL6A3-206ENST00000409809 UNQ6190/PRO20217Q6UXQ8 127 aa9.19□□□□□ -0.94
COL6A3-206ENST00000409809 FHL2Q14192 279 aa9.18□□□□□ -0.94
COL6A3-206ENST00000409809 C9orf116Q5BN46 136 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-206ENST00000409809 MSMPQ1L6U9 139 aa9.16□□□□□ -0.94
COL6A3-206ENST00000409809 ADORA2A-AS1P86434 159 aa9.16□□□□□ -0.94
COL6A3-206ENST00000409809 C6orf223Q8N319 242 aa9.16□□□□□ -0.94
COL6A3-206ENST00000409809 Q8NBF4 154 aa9.16□□□□□ -0.94
COL6A3-206ENST00000409809 GRNP28799 593 aaKnown RBP9.15□□□□□ -0.95
COL6A3-206ENST00000409809 TRBV7-4A0A0J9YYF1 115 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms