RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 CRIP1P50238 77 aa5.72□□□□□ -1.49
SYNE1-210ENST00000409694 LINC00482Q8N8I6 264 aa5.72□□□□□ -1.49
SYNE1-210ENST00000409694 RETNLBQ9BQ08 111 aa5.72□□□□□ -1.49
SYNE1-210ENST00000409694 LMO4P61968 165 aa5.72□□□□□ -1.49
SYNE1-210ENST00000409694 LINC01556Q5JQF7 62 aa5.71□□□□□ -1.49
SYNE1-210ENST00000409694 Q6ZS46 218 aa5.71□□□□□ -1.5
SYNE1-210ENST00000409694 PROK1P58294 105 aa5.71□□□□□ -1.5
SYNE1-210ENST00000409694 Q6ZSV7 163 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 IGKV2D-30A0A075B6S6 120 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 IGIPA6NJ69 53 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 SMIM1B2RUZ4 78 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 IGKV2-30P06310 120 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 INAFM1C9JVW0 142 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 A0A087WSZ3 146 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 A0A1B0GUV1 79 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 C6orf223Q8N319 242 aa5.7□□□□□ -1.5
SYNE1-210ENST00000409694 PTPN13Q12923 2485 aa5.69□□□□□ -1.5
SYNE1-210ENST00000409694 RPS28P62857 69 aaKnown RBP5.69□□□□□ -1.5
SYNE1-210ENST00000409694 TRAV22A0A0B4J277 110 aa5.69□□□□□ -1.5
SYNE1-210ENST00000409694 CCDC168Q8NDH2 2452 aa5.68□□□□□ -1.5
SYNE1-210ENST00000409694 LINC00242Q5T6M2 205 aa5.68□□□□□ -1.5
SYNE1-210ENST00000409694 UNQ6190/PRO20217Q6UXQ8 127 aa5.68□□□□□ -1.5
SYNE1-210ENST00000409694 A0A087WVE0 104 aa5.68□□□□□ -1.5
SYNE1-210ENST00000409694 ATP11AUNQ6ZP68 121 aa5.68□□□□□ -1.5
SYNE1-210ENST00000409694 COL27A1Q8IZC6 1860 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-210ENST00000409694 IGLV1-40P01703 118 aa5.67□□□□□ -1.5
SYNE1-210ENST00000409694 PRM2P04554 102 aa5.67□□□□□ -1.5
SYNE1-210ENST00000409694 C1orf134Q5TEV5 83 aa5.67□□□□□ -1.5
SYNE1-210ENST00000409694 AMELXQ99217 191 aa5.66□□□□□ -1.5
SYNE1-210ENST00000409694 MYO9AB2RTY4 2548 aa5.65□□□□□ -1.5
SYNE1-210ENST00000409694 LY6G6DO95868 133 aa5.65□□□□□ -1.51
SYNE1-210ENST00000409694 SMIM29Q86T20 159 aa5.64□□□□□ -1.51
SYNE1-210ENST00000409694 C9orf116Q5BN46 136 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-210ENST00000409694 PRR9Q5T870 116 aa5.64□□□□□ -1.51
SYNE1-210ENST00000409694 CRIPTQ9P021 101 aa5.64□□□□□ -1.51
SYNE1-210ENST00000409694 COX6A2Q02221 97 aa5.63□□□□□ -1.51
SYNE1-210ENST00000409694 C11orf71Q6IPW1 123 aa5.63□□□□□ -1.51
SYNE1-210ENST00000409694 EDN2P20800 178 aa5.63□□□□□ -1.51
SYNE1-210ENST00000409694 NHLRC4P0CG21 123 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-210ENST00000409694 ZNF295-AS1Q8N0V1 137 aa5.63□□□□□ -1.51
SYNE1-210ENST00000409694 LINC01006Q8NI28 216 aa5.63□□□□□ -1.51
SYNE1-210ENST00000409694 CYP4F30PQ9H0H9 118 aa5.62□□□□□ -1.51
SYNE1-210ENST00000409694 ABCA2Q9BZC7 2435 aa5.62□□□□□ -1.51
SYNE1-210ENST00000409694 Q8NA96 180 aa5.62□□□□□ -1.51
SYNE1-210ENST00000409694 LINC00313P59037 77 aa5.62□□□□□ -1.51
SYNE1-210ENST00000409694 BRWD1-AS2P59051 145 aa5.62□□□□□ -1.51
SYNE1-210ENST00000409694 C11orf72Q8NBR9 251 aa5.61□□□□□ -1.51
SYNE1-210ENST00000409694 SSBP3-AS1Q7Z2R9 100 aa5.61□□□□□ -1.51
SYNE1-210ENST00000409694 NOTCH2Q04721 2471 aa5.61□□□□□ -1.51
SYNE1-210ENST00000409694 ZFYVE26Q68DK2 2539 aa5.61□□□□□ -1.51
SYNE1-210ENST00000409694 LINC00846Q9NV44 126 aa5.61□□□□□ -1.51
SYNE1-210ENST00000409694 LOC101927531A0A1B0GV80 90 aa5.61□□□□□ -1.51
SYNE1-210ENST00000409694 CRIP2P52943 208 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-210ENST00000409694 MOBPQ13875 183 aa5.61□□□□□ -1.51
SYNE1-210ENST00000409694 FHL2Q14192 279 aa5.61□□□□□ -1.51
SYNE1-210ENST00000409694 DEFB116Q30KQ4 102 aa5.6□□□□□ -1.51
SYNE1-210ENST00000409694 ADAMTSL4-AS1Q5T5F5 129 aa5.6□□□□□ -1.51
SYNE1-210ENST00000409694 PRR3P79522 188 aaKnown RBP5.6□□□□□ -1.51
SYNE1-210ENST00000409694 ZNF580Q9UK33 172 aa5.6□□□□□ -1.51
SYNE1-210ENST00000409694 LOC110117498A0A087WWA1 95 aa5.6□□□□□ -1.51
SYNE1-210ENST00000409694 BRI3O95415 125 aa5.59□□□□□ -1.51
SYNE1-210ENST00000409694 Q8NBF4 154 aa5.59□□□□□ -1.51
SYNE1-210ENST00000409694 C11orf21Q9P2W6 132 aa5.59□□□□□ -1.51
SYNE1-210ENST00000409694 IGLV1-51P01701 117 aa5.59□□□□□ -1.52
SYNE1-210ENST00000409694 LRRK2Q5S007 2527 aa5.58□□□□□ -1.52
SYNE1-210ENST00000409694 COL4A3Q01955 1670 aa5.58□□□□□ -1.52
SYNE1-210ENST00000409694 MUC22E2RYF6 1773 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-210ENST00000409694 COX8CQ7Z4L0 72 aa5.58□□□□□ -1.52
SYNE1-210ENST00000409694 TSPEAR-AS2P59090 65 aa5.58□□□□□ -1.52
SYNE1-210ENST00000409694 IGLV4-60A0A075B6I1 120 aa5.58□□□□□ -1.52
SYNE1-210ENST00000409694 ERC2-IT1O76042 136 aa5.58□□□□□ -1.52
SYNE1-210ENST00000409694 UQCR11O14957 56 aa5.58□□□□□ -1.52
SYNE1-210ENST00000409694 SMCR5Q8TEV8 140 aa5.58□□□□□ -1.52
SYNE1-210ENST00000409694 PLA2G5P39877 138 aa5.57□□□□□ -1.52
SYNE1-210ENST00000409694 Q9UF83 564 aa5.57□□□□□ -1.52
SYNE1-210ENST00000409694 LYPD5Q6UWN5 251 aa5.57□□□□□ -1.52
SYNE1-210ENST00000409694 C16orf95Q9H693 158 aa5.57□□□□□ -1.52
SYNE1-210ENST00000409694 SPACA4Q8TDM5 124 aa5.57□□□□□ -1.52
SYNE1-210ENST00000409694 C1orf229Q6ZS94 237 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-210ENST00000409694 C22orf24Q9Y442 160 aa5.57□□□□□ -1.52
SYNE1-210ENST00000409694 SPATA3Q8NHX4 192 aa5.56□□□□□ -1.52
SYNE1-210ENST00000409694 GPR179Q6PRD1 2367 aa5.56□□□□□ -1.52
SYNE1-210ENST00000409694 KIAA0087Q14695 138 aa5.56□□□□□ -1.52
SYNE1-210ENST00000409694 C10orf99Q6UWK7 81 aa5.56□□□□□ -1.52
SYNE1-210ENST00000409694 LINC01546A6NGU7 62 aa5.56□□□□□ -1.52
SYNE1-210ENST00000409694 C19orf84I3L1E1 186 aa5.56□□□□□ -1.52
SYNE1-210ENST00000409694 PCSK5Q92824 1860 aa5.56□□□□□ -1.52
SYNE1-210ENST00000409694 C4orf26Q17RF5 130 aa5.56□□□□□ -1.52
SYNE1-210ENST00000409694 C18orf65Q6ZTR6 163 aa5.55□□□□□ -1.52
SYNE1-210ENST00000409694 FAM229AH3BQW9 127 aa5.55□□□□□ -1.52
SYNE1-210ENST00000409694 ELOF1P60002 83 aaKnown RBP5.55□□□□□ -1.52
SYNE1-210ENST00000409694 EPM2AB3EWF7 344 aa5.54□□□□□ -1.52
SYNE1-210ENST00000409694 ODF3L2Q3SX64 289 aa5.54□□□□□ -1.52
SYNE1-210ENST00000409694 Q6ZPA2 131 aa5.54□□□□□ -1.52
SYNE1-210ENST00000409694 LINC01600Q96MT4 127 aa5.54□□□□□ -1.52
SYNE1-210ENST00000409694 GAS8-AS1O95177 125 aa5.54□□□□□ -1.52
SYNE1-210ENST00000409694 Q6ZRU5 148 aa5.54□□□□□ -1.52
SYNE1-210ENST00000409694 KIF25-AS1Q9Y6Z4 181 aa5.54□□□□□ -1.52
SYNE1-210ENST00000409694 CDIP1Q9H305 208 aa5.53□□□□□ -1.52
SYNE1-210ENST00000409694 DOPEY1Q5JWR5 2465 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms