RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 IGHV3OR16-9A0A0B4J2B5 98 aa12.85□□□□□ -0.35
PCDHA1-202ENST00000394633 CHCHD5Q9BSY4 110 aa12.85□□□□□ -0.35
PCDHA1-202ENST00000394633 TRBV6-8A0A0A6YYG3 113 aa12.84□□□□□ -0.35
PCDHA1-202ENST00000394633 LINC00158P58513 81 aa12.84□□□□□ -0.35
PCDHA1-202ENST00000394633 FHL2Q14192 279 aa12.84□□□□□ -0.35
PCDHA1-202ENST00000394633 CCL18P55774 89 aa12.82□□□□□ -0.36
PCDHA1-202ENST00000394633 SDIM1Q6ZPB5 146 aa12.82□□□□□ -0.36
PCDHA1-202ENST00000394633 SMIM11BQ8TCY0 68 aa12.82□□□□□ -0.36
PCDHA1-202ENST00000394633 IGLV1-51P01701 117 aa12.82□□□□□ -0.36
PCDHA1-202ENST00000394633 MALP21145 153 aa12.82□□□□□ -0.36
PCDHA1-202ENST00000394633 LINC00643Q86TS7 51 aa12.82□□□□□ -0.36
PCDHA1-202ENST00000394633 IMUPQ9GZP8 106 aa12.82□□□□□ -0.36
PCDHA1-202ENST00000394633 FAM110AQ9BQ89 295 aa12.81□□□□□ -0.36
PCDHA1-202ENST00000394633 A0A087WYN8 130 aa12.8□□□□□ -0.36
PCDHA1-202ENST00000394633 A0A087WZ39 114 aa12.8□□□□□ -0.36
PCDHA1-202ENST00000394633 C5orf38Q86SI9 138 aa12.8□□□□□ -0.36
PCDHA1-202ENST00000394633 IBA57-AS1B1ANH7 110 aa12.8□□□□□ -0.36
PCDHA1-202ENST00000394633 FAM236AA0A1B0GUQ0 79 aa12.79□□□□□ -0.36
PCDHA1-202ENST00000394633 FAM236BA0A1B0GV22 79 aa12.79□□□□□ -0.36
PCDHA1-202ENST00000394633 INAFM2P0DMQ5 153 aa12.79□□□□□ -0.36
PCDHA1-202ENST00000394633 STAB1Q9NY15 2570 aa12.79□□□□□ -0.36
PCDHA1-202ENST00000394633 PFN2P35080 140 aa12.78□□□□□ -0.36
PCDHA1-202ENST00000394633 GAGE2AQ6NT46 116 aa12.77□□□□□ -0.36
PCDHA1-202ENST00000394633 LINC00959A0A1B0GUT2 108 aa12.77□□□□□ -0.37
PCDHA1-202ENST00000394633 C9orf129Q5T035 196 aaKnown RBP12.76□□□□□ -0.37
PCDHA1-202ENST00000394633 DNAL4O96015 105 aa12.75□□□□□ -0.37
PCDHA1-202ENST00000394633 H0YGX0 51 aa12.74□□□□□ -0.37
PCDHA1-202ENST00000394633 ATP5G1P05496 136 aa12.74□□□□□ -0.37
PCDHA1-202ENST00000394633 SPATA3Q8NHX4 192 aa12.74□□□□□ -0.37
PCDHA1-202ENST00000394633 C11orf68Q9H3H3 251 aaKnown RBP12.74□□□□□ -0.37
PCDHA1-202ENST00000394633 PAX4O43316 350 aa12.73□□□□□ -0.37
PCDHA1-202ENST00000394633 DEFB130BP0DP73 79 aa12.73□□□□□ -0.37
PCDHA1-202ENST00000394633 DEFB130AP0DP74 79 aa12.73□□□□□ -0.37
PCDHA1-202ENST00000394633 COL6A5A8TX70 2615 aa12.72□□□□□ -0.37
PCDHA1-202ENST00000394633 SVIPQ8NHG7 77 aa12.72□□□□□ -0.37
PCDHA1-202ENST00000394633 LECT2O14960 151 aa12.71□□□□□ -0.37
PCDHA1-202ENST00000394633 KRTAP24-1Q3LI83 254 aa12.71□□□□□ -0.37
PCDHA1-202ENST00000394633 C6orf226Q5I0X4 101 aa12.71□□□□□ -0.37
PCDHA1-202ENST00000394633 CXCL5P42830 114 aa12.7□□□□□ -0.38
PCDHA1-202ENST00000394633 XCL1P47992 114 aa12.7□□□□□ -0.38
PCDHA1-202ENST00000394633 OR13C6PQ8NH95 151 aa12.7□□□□□ -0.38
PCDHA1-202ENST00000394633 GYPEP15421 78 aa12.7□□□□□ -0.38
PCDHA1-202ENST00000394633 KIR2DL5BQ8NHK3 375 aa12.7□□□□□ -0.38
PCDHA1-202ENST00000394633 OBSCN-AS1Q96MR7 158 aa12.7□□□□□ -0.38
PCDHA1-202ENST00000394633 C14orf132Q9NPU4 83 aa12.7□□□□□ -0.38
PCDHA1-202ENST00000394633 LINC00612Q8N6U2 182 aa12.69□□□□□ -0.38
PCDHA1-202ENST00000394633 C3orf56Q8N813 242 aa12.69□□□□□ -0.38
PCDHA1-202ENST00000394633 LINC00482Q8N8I6 264 aa12.68□□□□□ -0.38
PCDHA1-202ENST00000394633 PKD1L1Q8TDX9 2849 aa12.68□□□□□ -0.38
PCDHA1-202ENST00000394633 SS18Q15532 418 aa12.68□□□□□ -0.38
PCDHA1-202ENST00000394633 CLPSL2Q6UWE3 100 aa12.67□□□□□ -0.38
PCDHA1-202ENST00000394633 A0A1B0GUV1 79 aa12.66□□□□□ -0.38
PCDHA1-202ENST00000394633 SLPIP03973 132 aa12.66□□□□□ -0.38
PCDHA1-202ENST00000394633 Q8IZM0 81 aa12.66□□□□□ -0.38
PCDHA1-202ENST00000394633 KLK5Q9Y337 293 aaPredicted RBP12.66□□□□□ -0.38
PCDHA1-202ENST00000394633 NCR3O14931 201 aa12.65□□□□□ -0.38
PCDHA1-202ENST00000394633 A0A096LPF7 62 aa12.64□□□□□ -0.39
PCDHA1-202ENST00000394633 C3orf22Q8N5N4 141 aa12.64□□□□□ -0.39
PCDHA1-202ENST00000394633 SMIM20Q8N5G0 67 aa12.63□□□□□ -0.39
PCDHA1-202ENST00000394633 X6R8D5 127 aa12.62□□□□□ -0.39
PCDHA1-202ENST00000394633 CMYA5Q8N3K9 4069 aa12.62□□□□□ -0.39
PCDHA1-202ENST00000394633 NANOS2P60321 138 aaKnown RBP12.62□□□□□ -0.39
PCDHA1-202ENST00000394633 LINC00846Q9NV44 126 aa12.62□□□□□ -0.39
PCDHA1-202ENST00000394633 HIST1H4AP62805 103 aaKnown RBP12.61□□□□□ -0.39
PCDHA1-202ENST00000394633 LINC01561Q8N1V8 128 aa12.61□□□□□ -0.39
PCDHA1-202ENST00000394633 TMEM126AQ9H061 195 aa12.61□□□□□ -0.39
PCDHA1-202ENST00000394633 PRR3P79522 188 aaKnown RBP12.61□□□□□ -0.39
PCDHA1-202ENST00000394633 ORMDL1Q9P0S3 153 aa12.61□□□□□ -0.39
PCDHA1-202ENST00000394633 PRO0255Q9UI72 69 aa12.61□□□□□ -0.39
PCDHA1-202ENST00000394633 UQCRQO14949 82 aa12.6□□□□□ -0.39
PCDHA1-202ENST00000394633 C9orf153Q5TBE3 101 aa12.6□□□□□ -0.39
PCDHA1-202ENST00000394633 KIAA0087Q14695 138 aa12.6□□□□□ -0.39
PCDHA1-202ENST00000394633 LINC00167Q96N53 147 aa12.59□□□□□ -0.39
PCDHA1-202ENST00000394633 IGKV3D-7A0A0C4DH55 119 aa12.58□□□□□ -0.39
PCDHA1-202ENST00000394633 Q6JHZ5 121 aa12.58□□□□□ -0.39
PCDHA1-202ENST00000394633 LINC00269Q8N2A0 174 aa12.58□□□□□ -0.4
PCDHA1-202ENST00000394633 LINC00526Q96FQ7 95 aa12.57□□□□□ -0.4
PCDHA1-202ENST00000394633 C2orf48Q96LS8 159 aa12.57□□□□□ -0.4
PCDHA1-202ENST00000394633 ANK2Q01484 3957 aa12.56□□□□□ -0.4
PCDHA1-202ENST00000394633 CD164L2Q6UWJ8 174 aa12.56□□□□□ -0.4
PCDHA1-202ENST00000394633 Q8N3U1 123 aa12.56□□□□□ -0.4
PCDHA1-202ENST00000394633 COX7CP15954 63 aa12.56□□□□□ -0.4
PCDHA1-202ENST00000394633 SMIM9A6NGZ8 99 aa12.55□□□□□ -0.4
PCDHA1-202ENST00000394633 NDUFC2O95298 119 aa12.55□□□□□ -0.4
PCDHA1-202ENST00000394633 Q8N814 137 aa12.55□□□□□ -0.4
PCDHA1-202ENST00000394633 CHCHD10Q8WYQ3 142 aaPredicted RBP12.55□□□□□ -0.4
PCDHA1-202ENST00000394633 CFAP161Q6P656 301 aa12.54□□□□□ -0.4
PCDHA1-202ENST00000394633 IGLV10-54A0A075B6I4 117 aa12.54□□□□□ -0.4
PCDHA1-202ENST00000394633 A0A1B0GX51 115 aa12.54□□□□□ -0.4
PCDHA1-202ENST00000394633 ATOX1O00244 68 aa12.54□□□□□ -0.4
PCDHA1-202ENST00000394633 COX17Q14061 63 aa12.54□□□□□ -0.4
PCDHA1-202ENST00000394633 C9orf116Q5BN46 136 aaPredicted RBP12.54□□□□□ -0.4
PCDHA1-202ENST00000394633 CCKP06307 115 aa12.53□□□□□ -0.4
PCDHA1-202ENST00000394633 NBEAL2Q6ZNJ1 2754 aa12.53□□□□□ -0.4
PCDHA1-202ENST00000394633 RPL18AQ02543 176 aaKnown RBP12.52□□□□□ -0.41
PCDHA1-202ENST00000394633 Q8NDZ9 215 aa12.52□□□□□ -0.41
PCDHA1-202ENST00000394633 IGHV4-28A0A0C4DH34 117 aa12.52□□□□□ -0.41
PCDHA1-202ENST00000394633 ANGP03950 147 aaKnown RBP12.52□□□□□ -0.41
PCDHA1-202ENST00000394633 DEFB4AO15263 64 aa12.51□□□□□ -0.41
PCDHA1-202ENST00000394633 REG3AQ06141 175 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms