RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 LECT2O14960 151 aa12.49□□□□□ -0.41
SQSTM1-202ENST00000389805 RPL35AP18077 110 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-202ENST00000389805 RPL28P46779 137 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-202ENST00000389805 LINC01561Q8N1V8 128 aa12.49□□□□□ -0.41
SQSTM1-202ENST00000389805 TRAV13-2A0A0B4J235 113 aa12.48□□□□□ -0.41
SQSTM1-202ENST00000389805 F5H768 121 aa12.48□□□□□ -0.41
SQSTM1-202ENST00000389805 GIG44P09565 113 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-202ENST00000389805 SERP2Q8N6R1 65 aa12.48□□□□□ -0.41
SQSTM1-202ENST00000389805 WFDC9Q8NEX5 89 aa12.48□□□□□ -0.41
SQSTM1-202ENST00000389805 USP17L23D6RBM5 183 aa12.47□□□□□ -0.41
SQSTM1-202ENST00000389805 C4orf26Q17RF5 130 aa12.47□□□□□ -0.41
SQSTM1-202ENST00000389805 NOP10Q9NPE3 64 aaKnown RBP12.47□□□□□ -0.41
SQSTM1-202ENST00000389805 LINC00158P58513 81 aa12.47□□□□□ -0.41
SQSTM1-202ENST00000389805 NTM-AS1Q6ZSK4 140 aa12.46□□□□□ -0.41
SQSTM1-202ENST00000389805 HILS1P60008 231 aa12.46□□□□□ -0.42
SQSTM1-202ENST00000389805 RPS28P62857 69 aaKnown RBP12.46□□□□□ -0.42
SQSTM1-202ENST00000389805 NBEAL2Q6ZNJ1 2754 aa12.45□□□□□ -0.42
SQSTM1-202ENST00000389805 RNASE1P07998 156 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-202ENST00000389805 UPK3BQ9BT76 320 aa12.45□□□□□ -0.42
SQSTM1-202ENST00000389805 PFN2P35080 140 aa12.44□□□□□ -0.42
SQSTM1-202ENST00000389805 IL17DQ8TAD2 202 aa12.44□□□□□ -0.42
SQSTM1-202ENST00000389805 TMEM258P61165 79 aa12.43□□□□□ -0.42
SQSTM1-202ENST00000389805 RPL36AP83881 106 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-202ENST00000389805 Q6JHZ5 121 aa12.43□□□□□ -0.42
SQSTM1-202ENST00000389805 HRCT1Q6UXD1 115 aa12.43□□□□□ -0.42
SQSTM1-202ENST00000389805 RPL36ALQ969Q0 106 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-202ENST00000389805 CDC42SE2Q9NRR3 84 aa12.43□□□□□ -0.42
SQSTM1-202ENST00000389805 VWFP04275 2813 aa12.43□□□□□ -0.42
SQSTM1-202ENST00000389805 GCN1Q92616 2671 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-202ENST00000389805 J3QKU1 62 aa12.41□□□□□ -0.42
SQSTM1-202ENST00000389805 C16orf95Q9H693 158 aa12.41□□□□□ -0.42
SQSTM1-202ENST00000389805 C19orf73Q9NVV2 129 aa12.41□□□□□ -0.42
SQSTM1-202ENST00000389805 CCL18P55774 89 aa12.41□□□□□ -0.42
SQSTM1-202ENST00000389805 C11orf68Q9H3H3 251 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-202ENST00000389805 LOC100131303A0A0U1RQF7 123 aa12.4□□□□□ -0.42
SQSTM1-202ENST00000389805 PAX4O43316 350 aa12.4□□□□□ -0.42
SQSTM1-202ENST00000389805 IGLV1-51P01701 117 aa12.4□□□□□ -0.42
SQSTM1-202ENST00000389805 PF4P02776 101 aa12.4□□□□□ -0.42
SQSTM1-202ENST00000389805 COX7B2Q8TF08 81 aa12.4□□□□□ -0.42
SQSTM1-202ENST00000389805 TRAV23DV6A0A075B6W5 121 aa12.39□□□□□ -0.43
SQSTM1-202ENST00000389805 PLAC8L1A1L4L8 177 aa12.39□□□□□ -0.43
SQSTM1-202ENST00000389805 K7EQD1 137 aa12.39□□□□□ -0.43
SQSTM1-202ENST00000389805 FHL2Q14192 279 aa12.39□□□□□ -0.43
SQSTM1-202ENST00000389805 KMT2BQ9UMN6 2715 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-202ENST00000389805 OTOGQ6ZRI0 2925 aa12.39□□□□□ -0.43
SQSTM1-202ENST00000389805 UBE2L6O14933 153 aa12.39□□□□□ -0.43
SQSTM1-202ENST00000389805 TRGV2A0A075B6R0 118 aa12.38□□□□□ -0.43
SQSTM1-202ENST00000389805 KRTAP10-3P60369 221 aa12.38□□□□□ -0.43
SQSTM1-202ENST00000389805 OVOL2Q9BRP0 275 aa12.37□□□□□ -0.43
SQSTM1-202ENST00000389805 FAM19A1Q7Z5A9 133 aa12.36□□□□□ -0.43
SQSTM1-202ENST00000389805 H0YGX0 51 aa12.36□□□□□ -0.43
SQSTM1-202ENST00000389805 GHRHP01286 108 aa12.36□□□□□ -0.43
SQSTM1-202ENST00000389805 FAM19A3Q7Z5A8 133 aa12.36□□□□□ -0.43
SQSTM1-202ENST00000389805 OBSCN-AS1Q96MR7 158 aa12.36□□□□□ -0.43
SQSTM1-202ENST00000389805 CSNK1G2-AS1Q8NCQ2 148 aa12.35□□□□□ -0.43
SQSTM1-202ENST00000389805 SS18Q15532 418 aa12.34□□□□□ -0.43
SQSTM1-202ENST00000389805 Q5XG85 94 aa12.34□□□□□ -0.43
SQSTM1-202ENST00000389805 ENHOQ6UWT2 76 aa12.33□□□□□ -0.43
SQSTM1-202ENST00000389805 TRBV10-1A0A0K0K1A3 114 aa12.33□□□□□ -0.44
SQSTM1-202ENST00000389805 SPATA3Q8NHX4 192 aa12.33□□□□□ -0.44
SQSTM1-202ENST00000389805 ORMDL1Q9P0S3 153 aa12.33□□□□□ -0.44
SQSTM1-202ENST00000389805 C20orf197Q8N268 126 aa12.32□□□□□ -0.44
SQSTM1-202ENST00000389805 C16orf74Q96GX8 76 aa12.32□□□□□ -0.44
SQSTM1-202ENST00000389805 TMEM243Q9BU79 118 aa12.32□□□□□ -0.44
SQSTM1-202ENST00000389805 TENM1Q9UKZ4 2725 aa12.32□□□□□ -0.44
SQSTM1-202ENST00000389805 PRR3P79522 188 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-202ENST00000389805 CCKP06307 115 aa12.3□□□□□ -0.44
SQSTM1-202ENST00000389805 FLNBO75369 2602 aaKnown RBP12.3□□□□□ -0.44
SQSTM1-202ENST00000389805 IGLV4-60A0A075B6I1 120 aa12.3□□□□□ -0.44
SQSTM1-202ENST00000389805 TRGV4A0A0C4DH28 118 aa12.3□□□□□ -0.44
SQSTM1-202ENST00000389805 CMC4P56277 68 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-202ENST00000389805 DEFB130BP0DP73 79 aa12.29□□□□□ -0.44
SQSTM1-202ENST00000389805 DEFB130AP0DP74 79 aa12.29□□□□□ -0.44
SQSTM1-202ENST00000389805 LY6G6DO95868 133 aa12.28□□□□□ -0.44
SQSTM1-202ENST00000389805 WIPF1O43516 503 aa12.26□□□□□ -0.45
SQSTM1-202ENST00000389805 TRRAPQ9Y4A5 3859 aa12.26□□□□□ -0.45
SQSTM1-202ENST00000389805 TRBV6-4A0A1B0GX49 114 aa12.25□□□□□ -0.45
SQSTM1-202ENST00000389805 IBA57-AS1B1ANH7 110 aa12.24□□□□□ -0.45
SQSTM1-202ENST00000389805 C6orf226Q5I0X4 101 aa12.24□□□□□ -0.45
SQSTM1-202ENST00000389805 ATRQ13535 2644 aa12.24□□□□□ -0.45
SQSTM1-202ENST00000389805 IGHV3OR16-9A0A0B4J2B5 98 aa12.24□□□□□ -0.45
SQSTM1-202ENST00000389805 NSD1Q96L73 2696 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-202ENST00000389805 LINC00482Q8N8I6 264 aa12.24□□□□□ -0.45
SQSTM1-202ENST00000389805 INAFM1C9JVW0 142 aa12.22□□□□□ -0.45
SQSTM1-202ENST00000389805 XCL1P47992 114 aa12.21□□□□□ -0.45
SQSTM1-202ENST00000389805 CLPSL2Q6UWE3 100 aa12.21□□□□□ -0.46
SQSTM1-202ENST00000389805 S100A7L2Q5SY68 101 aa12.2□□□□□ -0.46
SQSTM1-202ENST00000389805 Q8N814 137 aa12.2□□□□□ -0.46
SQSTM1-202ENST00000389805 HIVEP1P15822 2718 aa12.2□□□□□ -0.46
SQSTM1-202ENST00000389805 DEFB4AO15263 64 aa12.2□□□□□ -0.46
SQSTM1-202ENST00000389805 A0A096LPF7 62 aa12.19□□□□□ -0.46
SQSTM1-202ENST00000389805 TRBV6-8A0A0A6YYG3 113 aa12.19□□□□□ -0.46
SQSTM1-202ENST00000389805 FAM236DA0A1B0GTK5 79 aa12.19□□□□□ -0.46
SQSTM1-202ENST00000389805 NDUFC2O95298 119 aa12.19□□□□□ -0.46
SQSTM1-202ENST00000389805 FAM236CP0DP71 79 aa12.19□□□□□ -0.46
SQSTM1-202ENST00000389805 UBL5Q9BZL1 73 aa12.19□□□□□ -0.46
SQSTM1-202ENST00000389805 JMJD7-PLA2G4BH0Y9G9 81 aa12.18□□□□□ -0.46
SQSTM1-202ENST00000389805 A0A087WZ39 114 aa12.18□□□□□ -0.46
SQSTM1-202ENST00000389805 SNURFQ9Y675 71 aa12.18□□□□□ -0.46
SQSTM1-202ENST00000389805 NANOS2P60321 138 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms