RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CMC4P56277 68 aaPredicted RBP14.72□□□□□ -0.05
UPF3A-202ENST00000375299 WFDC10AQ9H1F0 79 aa14.72□□□□□ -0.05
UPF3A-202ENST00000375299 TLN2Q9Y4G6 2542 aa14.72□□□□□ -0.05
UPF3A-202ENST00000375299 C2CD3Q4AC94 2353 aa14.72□□□□□ -0.05
UPF3A-202ENST00000375299 EPG5Q9HCE0 2579 aa14.71□□□□□ -0.05
UPF3A-202ENST00000375299 WNK1Q9H4A3 2382 aa14.71□□□□□ -0.06
UPF3A-202ENST00000375299 DNAJC9-AS1A6NH13 148 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 PLA2G2AP14555 144 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 LINC01561Q8N1V8 128 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 SERP2Q8N6R1 65 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 NOTCH3Q9UM47 2321 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 LINC00167Q96N53 147 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 CCKP06307 115 aa14.69□□□□□ -0.06
UPF3A-202ENST00000375299 CYSTM1Q9H1C7 97 aa14.69□□□□□ -0.06
UPF3A-202ENST00000375299 CSNK1G2-AS1Q8NCQ2 148 aa14.69□□□□□ -0.06
UPF3A-202ENST00000375299 ITPR3Q14573 2671 aa14.68□□□□□ -0.06
UPF3A-202ENST00000375299 USP17L23D6RBM5 183 aa14.68□□□□□ -0.06
UPF3A-202ENST00000375299 NF1P21359 2839 aa14.68□□□□□ -0.06
UPF3A-202ENST00000375299 Q8IZM0 81 aa14.67□□□□□ -0.06
UPF3A-202ENST00000375299 WFDC11Q8NEX6 87 aa14.66□□□□□ -0.06
UPF3A-202ENST00000375299 UPK3BQ9BT76 320 aa14.66□□□□□ -0.06
UPF3A-202ENST00000375299 XCL1P47992 114 aa14.66□□□□□ -0.06
UPF3A-202ENST00000375299 ESM1Q9NQ30 184 aa14.66□□□□□ -0.06
UPF3A-202ENST00000375299 JMJD7-PLA2G4BH0Y9G9 81 aa14.65□□□□□ -0.06
UPF3A-202ENST00000375299 C19orf73Q9NVV2 129 aa14.65□□□□□ -0.06
UPF3A-202ENST00000375299 SONP18583 2426 aaKnown RBP14.65□□□□□ -0.06
UPF3A-202ENST00000375299 NANOS2P60321 138 aaKnown RBP14.65□□□□□ -0.07
UPF3A-202ENST00000375299 RPS28P62857 69 aaKnown RBP14.65□□□□□ -0.07
UPF3A-202ENST00000375299 S100A7L2Q5SY68 101 aa14.63□□□□□ -0.07
UPF3A-202ENST00000375299 Q8N814 137 aa14.63□□□□□ -0.07
UPF3A-202ENST00000375299 TMEM258P61165 79 aa14.63□□□□□ -0.07
UPF3A-202ENST00000375299 NBPF19A0A087WUL8 3843 aa14.61□□□□□ -0.07
UPF3A-202ENST00000375299 FAM19A5Q7Z5A7 132 aaPredicted RBP14.61□□□□□ -0.07
UPF3A-202ENST00000375299 TMEM256-PLSCR3K7ERE1 68 aa14.6□□□□□ -0.07
UPF3A-202ENST00000375299 A0A1B0GUV1 79 aa14.6□□□□□ -0.07
UPF3A-202ENST00000375299 IGLV1-51P01701 117 aa14.6□□□□□ -0.07
UPF3A-202ENST00000375299 PRR3P79522 188 aaKnown RBP14.6□□□□□ -0.07
UPF3A-202ENST00000375299 ATP5EP2Q5VTU8 51 aa14.6□□□□□ -0.07
UPF3A-202ENST00000375299 NDUFC2O95298 119 aa14.59□□□□□ -0.07
UPF3A-202ENST00000375299 NIPBLQ6KC79 2804 aaeCLIP14.59□□□□□ -0.07
UPF3A-202ENST00000375299 CUBNO60494 3623 aa14.59□□□□□ -0.07
UPF3A-202ENST00000375299 CLPSL2Q6UWE3 100 aa14.59□□□□□ -0.07
UPF3A-202ENST00000375299 DEFB130BP0DP73 79 aa14.58□□□□□ -0.08
UPF3A-202ENST00000375299 DEFB130AP0DP74 79 aa14.58□□□□□ -0.08
UPF3A-202ENST00000375299 GYPEP15421 78 aa14.58□□□□□ -0.08
UPF3A-202ENST00000375299 FLNAP21333 2647 aaKnown RBP14.57□□□□□ -0.08
UPF3A-202ENST00000375299 HILS1P60008 231 aa14.56□□□□□ -0.08
UPF3A-202ENST00000375299 KIR2DL5BQ8NHK3 375 aa14.55□□□□□ -0.08
UPF3A-202ENST00000375299 SETXQ7Z333 2677 aaKnown RBP14.55□□□□□ -0.08
UPF3A-202ENST00000375299 LINC01006Q8NI28 216 aa14.55□□□□□ -0.08
UPF3A-202ENST00000375299 DPH3Q96FX2 82 aa14.55□□□□□ -0.08
UPF3A-202ENST00000375299 COX17Q14061 63 aa14.54□□□□□ -0.08
UPF3A-202ENST00000375299 LYPD5Q6UWN5 251 aa14.54□□□□□ -0.08
UPF3A-202ENST00000375299 KIAA0087Q14695 138 aa14.54□□□□□ -0.08
UPF3A-202ENST00000375299 LINC00612Q8N6U2 182 aa14.53□□□□□ -0.08
UPF3A-202ENST00000375299 WFDC9Q8NEX5 89 aa14.53□□□□□ -0.08
UPF3A-202ENST00000375299 CCDC168Q8NDH2 2452 aa14.53□□□□□ -0.08
UPF3A-202ENST00000375299 SMIM9A6NGZ8 99 aa14.52□□□□□ -0.08
UPF3A-202ENST00000375299 GHRHP01286 108 aa14.52□□□□□ -0.08
UPF3A-202ENST00000375299 JMJD1CQ15652 2540 aa14.52□□□□□ -0.09
UPF3A-202ENST00000375299 KRTAP1-1Q07627 177 aa14.51□□□□□ -0.09
UPF3A-202ENST00000375299 ENHOQ6UWT2 76 aa14.51□□□□□ -0.09
UPF3A-202ENST00000375299 C16orf95Q9H693 158 aa14.51□□□□□ -0.09
UPF3A-202ENST00000375299 C6orf99Q4VX62 202 aa14.5□□□□□ -0.09
UPF3A-202ENST00000375299 FAM19A1Q7Z5A9 133 aa14.5□□□□□ -0.09
UPF3A-202ENST00000375299 UBL5Q9BZL1 73 aa14.5□□□□□ -0.09
UPF3A-202ENST00000375299 SETD2Q9BYW2 2564 aaPredicted RBP14.49□□□□□ -0.09
UPF3A-202ENST00000375299 TRAV23DV6A0A075B6W5 121 aa14.49□□□□□ -0.09
UPF3A-202ENST00000375299 TRBV10-3A0A0K0K1G6 114 aa14.49□□□□□ -0.09
UPF3A-202ENST00000375299 CD164L2Q6UWJ8 174 aa14.49□□□□□ -0.09
UPF3A-202ENST00000375299 RNASE1P07998 156 aaKnown RBP14.49□□□□□ -0.09
UPF3A-202ENST00000375299 C5orf47Q569G3 176 aa14.49□□□□□ -0.09
UPF3A-202ENST00000375299 A0A096LPF7 62 aa14.48□□□□□ -0.09
UPF3A-202ENST00000375299 IGHV4-28A0A0C4DH34 117 aa14.48□□□□□ -0.09
UPF3A-202ENST00000375299 DSCR8Q96T75 97 aa14.48□□□□□ -0.09
UPF3A-202ENST00000375299 TENM4Q6N022 2769 aa14.48□□□□□ -0.09
UPF3A-202ENST00000375299 LINC00269Q8N2A0 174 aa14.47□□□□□ -0.09
UPF3A-202ENST00000375299 PRO0255Q9UI72 69 aa14.47□□□□□ -0.09
UPF3A-202ENST00000375299 C9orf116Q5BN46 136 aaPredicted RBP14.47□□□□□ -0.09
UPF3A-202ENST00000375299 Q8NDZ9 215 aa14.47□□□□□ -0.09
UPF3A-202ENST00000375299 LINC00575Q6W349 94 aa14.46□□□□□ -0.09
UPF3A-202ENST00000375299 CHCHD10Q8WYQ3 142 aaPredicted RBP14.46□□□□□ -0.09
UPF3A-202ENST00000375299 ANK3Q12955 4377 aaKnown RBP14.46□□□□□ -0.1
UPF3A-202ENST00000375299 PDZD2O15018 2839 aa14.46□□□□□ -0.1
UPF3A-202ENST00000375299 OXTP01178 125 aa14.45□□□□□ -0.1
UPF3A-202ENST00000375299 Q6ZQT0 140 aa14.44□□□□□ -0.1
UPF3A-202ENST00000375299 IGLV10-54A0A075B6I4 117 aa14.43□□□□□ -0.1
UPF3A-202ENST00000375299 RBM3P98179 157 aaKnown RBP14.42□□□□□ -0.1
UPF3A-202ENST00000375299 ZNF561-AS1K7EIQ3 104 aa14.42□□□□□ -0.1
UPF3A-202ENST00000375299 NDUFC2-KCTD14E9PQ53 114 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 LOC110117498A0A087WWA1 95 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 REG3AQ06141 175 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 X6R8D5 127 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 ACANP16112 2415 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 ANGP03950 147 aaKnown RBP14.4□□□□□ -0.1
UPF3A-202ENST00000375299 C6orf223Q8N319 242 aa14.4□□□□□ -0.1
UPF3A-202ENST00000375299 KMT2BQ9UMN6 2715 aaPredicted RBP14.4□□□□□ -0.1
UPF3A-202ENST00000375299 Q8N3U1 123 aa14.39□□□□□ -0.11
UPF3A-202ENST00000375299 LAMTOR3Q9UHA4 124 aa14.38□□□□□ -0.11
UPF3A-202ENST00000375299 MTORP42345 2549 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms