RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF861PO60384 105 aa2.84□□□□□ -1.96
USH2A-202ENST00000366942 TP53AIP1Q9HCN2 124 aa2.84□□□□□ -1.96
USH2A-202ENST00000366942 APLNQ9ULZ1 77 aa2.84□□□□□ -1.96
USH2A-202ENST00000366942 Q6ZRU5 148 aa2.84□□□□□ -1.96
USH2A-202ENST00000366942 RSPO1Q2MKA7 263 aaPredicted RBP2.83□□□□□ -1.96
USH2A-202ENST00000366942 Q6ZQY7 126 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 WFDC13Q8IUB5 93 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 UNQ6190/PRO20217Q6UXQ8 127 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 IGLV4-60A0A075B6I1 120 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 CARHSP1Q9Y2V2 147 aaKnown RBP2.83□□□□□ -1.96
USH2A-202ENST00000366942 SIPA1L1O43166 1804 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 KIF26AQ9ULI4 1882 aaPredicted RBP2.83□□□□□ -1.96
USH2A-202ENST00000366942 TOMM6Q96B49 74 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 MRPL52Q86TS9 123 aaKnown RBP2.82□□□□□ -1.96
USH2A-202ENST00000366942 TEN1Q86WV5 123 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 PLXNB1O43157 2135 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 M0QY20 66 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 NDUFV3P56181 108 aaKnown RBP2.82□□□□□ -1.96
USH2A-202ENST00000366942 C14orf144Q96I85 54 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 CSDC2Q9Y534 153 aaKnown RBP2.82□□□□□ -1.96
USH2A-202ENST00000366942 CDKN2A-AS1Q9UH64 79 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 TIMM17BO60830 172 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 C7orf65Q6ZTY9 151 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 LINC00526Q96FQ7 95 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 A0A1B0GW54 56 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 PLA2G10O15496 165 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 Q8NAQ8 132 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 UNC79Q9P2D8 2635 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 GREB1LQ9C091 1923 aaPredicted RBP2.81□□□□□ -1.96
USH2A-202ENST00000366942 A0A0B4J2C4 111 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 IGLC3P0DOY3 106 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 VPREB1P12018 145 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 PRLHP81277 87 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 CDC42SE2Q9NRR3 84 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 NYNRINQ9P2P1 1898 aaKnown RBP2.81□□□□□ -1.96
USH2A-202ENST00000366942 DEFB1P60022 68 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 TP53TG3Q9ULZ0 132 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 CELA1Q9UNI1 258 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 A0A087WSZ3 146 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 H3BT86 120 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 IGLV7-43P04211 117 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 FP248Q71RG6 208 aaPredicted RBP2.81□□□□□ -1.96
USH2A-202ENST00000366942 VWA8A3KMH1 1905 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 TRBV7-6A0A0J9YX20 115 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 RPL39P62891 51 aaKnown RBP2.8□□□□□ -1.96
USH2A-202ENST00000366942 TRBV27A0A0K0K1C4 114 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 CAMK2N1Q7Z7J9 78 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 PLXNA4Q9HCM2 1894 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 NDUFC2O95298 119 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 HTTP42858 3142 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 FAM229BQ4G0N7 80 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 ANAPC13Q9BS18 74 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 FAM30AQ9NZY2 134 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 GVQW2A0A096LPI5 108 aaPredicted RBP2.79□□□□□ -1.96
USH2A-202ENST00000366942 H2BFSP57053 126 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 TNP2Q05952 138 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 COL4A4P53420 1690 aaPredicted RBP2.79□□□□□ -1.96
USH2A-202ENST00000366942 E9PLD3 99 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 CXCL6P80162 114 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 GDF5OSQ5U4N7 250 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 PATE2Q6UY27 113 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 PCDH15Q96QU1 1955 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 TNRC6AQ8NDV7 1962 aaKnown RBP2.79□□□□□ -1.96
USH2A-202ENST00000366942 IGLV4-3A0A075B6K6 122 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 TRBV10-3A0A0K0K1G6 114 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 ETDBQ3ZM63 59 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 SOSTDC1Q6X4U4 206 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 C2orf91Q6ZV80 131 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 Q9UF83 564 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 HCG22E2RYF7 251 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 IGLV6-57P01721 117 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 KRTAP10-11P60412 298 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 HEATR5AQ86XA9 2040 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 SRCAPQ6ZRS2 3230 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 PHF5AQ7RTV0 110 aaKnown RBP2.78□□□□□ -1.96
USH2A-202ENST00000366942 HIST3H2BBQ8N257 126 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 RETNLBQ9BQ08 111 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 ZSWIM8A7E2V4 1837 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 PLXND1Q9Y4D7 1925 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 ERC2-IT1O76042 136 aa2.78□□□□□ -1.97
USH2A-202ENST00000366942 ZNF22P17026 224 aaPredicted RBP2.78□□□□□ -1.97
USH2A-202ENST00000366942 PCNTO95613 3336 aa2.78□□□□□ -1.97
USH2A-202ENST00000366942 HELZP42694 1942 aaKnown RBP2.77□□□□□ -1.97
USH2A-202ENST00000366942 GBF1Q92538 1859 aa2.77□□□□□ -1.97
USH2A-202ENST00000366942 CSAG1Q6PB30 78 aa2.77□□□□□ -1.97
USH2A-202ENST00000366942 C18orf32Q8TCD1 76 aa2.77□□□□□ -1.97
USH2A-202ENST00000366942 LINC00308Q8TCZ7 52 aa2.77□□□□□ -1.97
USH2A-202ENST00000366942 BRCA2P51587 3418 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 LITAFQ99732 161 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 ITPR3Q14573 2671 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 PTPRSQ13332 1948 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 FAM19A4Q96LR4 140 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 LTBP2Q14767 1821 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 NCOA6Q14686 2063 aaPredicted RBP2.76□□□□□ -1.97
USH2A-202ENST00000366942 LCTP09848 1927 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 ADCYAP1P18509 176 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 IGLV8-61A0A075B6I0 122 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BJP06899 126 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BOP23527 126 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BBP33778 126 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms