RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ESRGQ1W209 222 aa11.18□□□□□ -0.62
PTPRF-201ENST00000359947 SERP1Q9Y6X1 66 aa11.18□□□□□ -0.62
PTPRF-201ENST00000359947 IGHV6-1A0A0B4J1U7 121 aa11.17□□□□□ -0.62
PTPRF-201ENST00000359947 TRBV10-3A0A0K0K1G6 114 aa11.17□□□□□ -0.62
PTPRF-201ENST00000359947 MRPS12O15235 138 aaKnown RBP11.16□□□□□ -0.62
PTPRF-201ENST00000359947 Q8N9L7 120 aa11.16□□□□□ -0.62
PTPRF-201ENST00000359947 ANKRD11Q6UB99 2663 aaPredicted RBP11.15□□□□□ -0.62
PTPRF-201ENST00000359947 LINC00242Q5T6M2 205 aa11.15□□□□□ -0.63
PTPRF-201ENST00000359947 CELA1Q9UNI1 258 aa11.14□□□□□ -0.63
PTPRF-201ENST00000359947 TIMM17BO60830 172 aa11.14□□□□□ -0.63
PTPRF-201ENST00000359947 LYPD5Q6UWN5 251 aa11.13□□□□□ -0.63
PTPRF-201ENST00000359947 SPTBN4Q9H254 2564 aa11.13□□□□□ -0.63
PTPRF-201ENST00000359947 EGFEM1PQ0D2K5 195 aa11.13□□□□□ -0.63
PTPRF-201ENST00000359947 FHL3Q13643 280 aa11.13□□□□□ -0.63
PTPRF-201ENST00000359947 ATP5EP2Q5VTU8 51 aa11.13□□□□□ -0.63
PTPRF-201ENST00000359947 LST1O00453 97 aa11.12□□□□□ -0.63
PTPRF-201ENST00000359947 DEFB116Q30KQ4 102 aa11.12□□□□□ -0.63
PTPRF-201ENST00000359947 Q6ZSN1 163 aa11.12□□□□□ -0.63
PTPRF-201ENST00000359947 CHD8Q9HCK8 2581 aa11.12□□□□□ -0.63
PTPRF-201ENST00000359947 USP9XQ93008 2570 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-201ENST00000359947 FAM19A3Q7Z5A8 133 aa11.11□□□□□ -0.63
PTPRF-201ENST00000359947 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-201ENST00000359947 MDFIQ99750 246 aa11.1□□□□□ -0.63
PTPRF-201ENST00000359947 NHLRC4P0CG21 123 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-201ENST00000359947 CHCHD7Q9BUK0 85 aa11.1□□□□□ -0.63
PTPRF-201ENST00000359947 Q9BRP9 147 aa11.1□□□□□ -0.63
PTPRF-201ENST00000359947 NDUFC1O43677 76 aa11.09□□□□□ -0.63
PTPRF-201ENST00000359947 SPINK1P00995 79 aa11.08□□□□□ -0.64
PTPRF-201ENST00000359947 SMIM1B2RUZ4 78 aa11.08□□□□□ -0.64
PTPRF-201ENST00000359947 PRLHP81277 87 aa11.07□□□□□ -0.64
PTPRF-201ENST00000359947 IGIPA6NJ69 53 aa11.07□□□□□ -0.64
PTPRF-201ENST00000359947 SERP2Q8N6R1 65 aa11.07□□□□□ -0.64
PTPRF-201ENST00000359947 XGP55808 180 aa11.06□□□□□ -0.64
PTPRF-201ENST00000359947 C2orf48Q96LS8 159 aa11.06□□□□□ -0.64
PTPRF-201ENST00000359947 ATP5EP56381 51 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-201ENST00000359947 A8MTW9 85 aa11.06□□□□□ -0.64
PTPRF-201ENST00000359947 PRYO14603 147 aa11.05□□□□□ -0.64
PTPRF-201ENST00000359947 ZNF580Q9UK33 172 aa11.05□□□□□ -0.64
PTPRF-201ENST00000359947 CCDC179H3BU77 68 aa11.04□□□□□ -0.64
PTPRF-201ENST00000359947 LINC00337Q8N6G1 96 aa11.03□□□□□ -0.64
PTPRF-201ENST00000359947 A0A087WYN8 130 aa11.03□□□□□ -0.64
PTPRF-201ENST00000359947 NTM-AS1Q6ZSK4 140 aa11.03□□□□□ -0.64
PTPRF-201ENST00000359947 Q8N814 137 aa11.03□□□□□ -0.64
PTPRF-201ENST00000359947 CEP295Q9C0D2 2601 aa11.03□□□□□ -0.64
PTPRF-201ENST00000359947 SBSPONQ8IVN8 264 aa11.03□□□□□ -0.64
PTPRF-201ENST00000359947 Q6ZRU5 148 aa11.03□□□□□ -0.64
PTPRF-201ENST00000359947 LINC01547P58512 204 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-201ENST00000359947 C2orf91Q6ZV80 131 aa11.01□□□□□ -0.65
PTPRF-201ENST00000359947 FASNP49327 2511 aaKnown RBP11.01□□□□□ -0.65
PTPRF-201ENST00000359947 C1orf195Q5TG92 126 aa11.01□□□□□ -0.65
PTPRF-201ENST00000359947 CNFNQ9BYD5 112 aa11□□□□□ -0.65
PTPRF-201ENST00000359947 LINC00208Q96KT6 92 aa11□□□□□ -0.65
PTPRF-201ENST00000359947 A0A087WSZ3 146 aa11□□□□□ -0.65
PTPRF-201ENST00000359947 PCOTHQ58A44 107 aa10.99□□□□□ -0.65
PTPRF-201ENST00000359947 PTPRBP23467 1997 aa10.99□□□□□ -0.65
PTPRF-201ENST00000359947 KRTAP24-1Q3LI83 254 aa10.99□□□□□ -0.65
PTPRF-201ENST00000359947 Q6Q795 121 aa10.98□□□□□ -0.65
PTPRF-201ENST00000359947 COX7CP15954 63 aa10.98□□□□□ -0.65
PTPRF-201ENST00000359947 POLQO75417 2590 aa10.98□□□□□ -0.65
PTPRF-201ENST00000359947 ADAMTSL4-AS1Q5T5F5 129 aa10.98□□□□□ -0.65
PTPRF-201ENST00000359947 MUC7Q8TAX7 377 aa10.98□□□□□ -0.65
PTPRF-201ENST00000359947 TSPEAR-AS2P59090 65 aa10.98□□□□□ -0.65
PTPRF-201ENST00000359947 IMUPQ9GZP8 106 aa10.98□□□□□ -0.65
PTPRF-201ENST00000359947 SPACA4Q8TDM5 124 aa10.97□□□□□ -0.65
PTPRF-201ENST00000359947 C10orf142B7Z368 130 aa10.96□□□□□ -0.65
PTPRF-201ENST00000359947 PKD1L2Q7Z442 2459 aa10.96□□□□□ -0.65
PTPRF-201ENST00000359947 PMAIP1Q13794 54 aa10.96□□□□□ -0.66
PTPRF-201ENST00000359947 LINC00575Q6W349 94 aa10.96□□□□□ -0.66
PTPRF-201ENST00000359947 USP9YO00507 2555 aaPredicted RBP10.96□□□□□ -0.66
PTPRF-201ENST00000359947 SOSTDC1Q6X4U4 206 aa10.95□□□□□ -0.66
PTPRF-201ENST00000359947 TRBV7-6A0A0J9YX20 115 aa10.95□□□□□ -0.66
PTPRF-201ENST00000359947 C22orf24Q9Y442 160 aa10.95□□□□□ -0.66
PTPRF-201ENST00000359947 BEAN1Q3B7T3 259 aa10.94□□□□□ -0.66
PTPRF-201ENST00000359947 ANKRD17O75179 2603 aaKnown RBP10.93□□□□□ -0.66
PTPRF-201ENST00000359947 A0A1B0GUV1 79 aa10.93□□□□□ -0.66
PTPRF-201ENST00000359947 YPEL4Q96NS1 127 aa10.93□□□□□ -0.66
PTPRF-201ENST00000359947 SMCR5Q8TEV8 140 aa10.92□□□□□ -0.66
PTPRF-201ENST00000359947 C16orf90A8MZG2 172 aa10.92□□□□□ -0.66
PTPRF-201ENST00000359947 MTORP42345 2549 aa10.92□□□□□ -0.66
PTPRF-201ENST00000359947 FAM229AH3BQW9 127 aa10.91□□□□□ -0.66
PTPRF-201ENST00000359947 Q6JHZ5 121 aa10.91□□□□□ -0.66
PTPRF-201ENST00000359947 COL27A1Q8IZC6 1860 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-201ENST00000359947 CHTF8P0CG12 524 aa10.9□□□□□ -0.66
PTPRF-201ENST00000359947 IGKV2D-30A0A075B6S6 120 aa10.9□□□□□ -0.66
PTPRF-201ENST00000359947 IGKV2-30P06310 120 aa10.9□□□□□ -0.66
PTPRF-201ENST00000359947 LIMD2Q9BT23 127 aa10.9□□□□□ -0.66
PTPRF-201ENST00000359947 CSDC2Q9Y534 153 aaKnown RBP10.9□□□□□ -0.67
PTPRF-201ENST00000359947 AMELXQ99217 191 aa10.89□□□□□ -0.67
PTPRF-201ENST00000359947 A0A087WVE0 104 aa10.89□□□□□ -0.67
PTPRF-201ENST00000359947 MOBPQ13875 183 aa10.88□□□□□ -0.67
PTPRF-201ENST00000359947 ACANP16112 2415 aa10.88□□□□□ -0.67
PTPRF-201ENST00000359947 SMIM26A0A096LP01 95 aa10.87□□□□□ -0.67
PTPRF-201ENST00000359947 URB1-AS1Q96HZ7 61 aa10.87□□□□□ -0.67
PTPRF-201ENST00000359947 PSPHP1O15172 72 aa10.87□□□□□ -0.67
PTPRF-201ENST00000359947 HCG22E2RYF7 251 aa10.86□□□□□ -0.67
PTPRF-201ENST00000359947 F8P00451 2351 aa10.86□□□□□ -0.67
PTPRF-201ENST00000359947 TRAV7A0A075B6U4 112 aa10.85□□□□□ -0.67
PTPRF-201ENST00000359947 LINC00315P59091 139 aa10.85□□□□□ -0.67
PTPRF-201ENST00000359947 Q8N2B8 174 aa10.84□□□□□ -0.67
PTPRF-201ENST00000359947 H0Y9P7 68 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms