RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 LINC00846Q9NV44 126 aa11.46□□□□□ -0.57
COL18A1-203ENST00000359759 MUC7Q8TAX7 377 aa11.46□□□□□ -0.58
COL18A1-203ENST00000359759 FHL2Q14192 279 aa11.45□□□□□ -0.58
COL18A1-203ENST00000359759 PRLHP81277 87 aa11.45□□□□□ -0.58
COL18A1-203ENST00000359759 ODF3L2Q3SX64 289 aa11.45□□□□□ -0.58
COL18A1-203ENST00000359759 Q6ZTC4 211 aa11.44□□□□□ -0.58
COL18A1-203ENST00000359759 C7orf65Q6ZTY9 151 aa11.43□□□□□ -0.58
COL18A1-203ENST00000359759 AVPP01185 164 aa11.43□□□□□ -0.58
COL18A1-203ENST00000359759 IGKV2D-30A0A075B6S6 120 aa11.42□□□□□ -0.58
COL18A1-203ENST00000359759 IGKV2-30P06310 120 aa11.42□□□□□ -0.58
COL18A1-203ENST00000359759 SMIM29Q86T20 159 aa11.42□□□□□ -0.58
COL18A1-203ENST00000359759 C1orf64Q8NEQ6 169 aa11.42□□□□□ -0.58
COL18A1-203ENST00000359759 COL4A4P53420 1690 aaPredicted RBP11.42□□□□□ -0.58
COL18A1-203ENST00000359759 EXPH5Q8NEV8 1989 aa11.4□□□□□ -0.58
COL18A1-203ENST00000359759 CDSNQ15517 529 aa11.4□□□□□ -0.58
COL18A1-203ENST00000359759 RAI1Q7Z5J4 1906 aaPredicted RBP11.4□□□□□ -0.58
COL18A1-203ENST00000359759 AMELXQ99217 191 aa11.4□□□□□ -0.58
COL18A1-203ENST00000359759 SERTAD4-AS1Q5TG53 156 aa11.39□□□□□ -0.59
COL18A1-203ENST00000359759 PLA2G1BP04054 148 aaKnown RBP11.38□□□□□ -0.59
COL18A1-203ENST00000359759 C2orf48Q96LS8 159 aa11.38□□□□□ -0.59
COL18A1-203ENST00000359759 WNK1Q9H4A3 2382 aa11.37□□□□□ -0.59
COL18A1-203ENST00000359759 CEP192Q8TEP8 1941 aa11.37□□□□□ -0.59
COL18A1-203ENST00000359759 Q6ZRU5 148 aa11.37□□□□□ -0.59
COL18A1-203ENST00000359759 C4orf26Q17RF5 130 aa11.36□□□□□ -0.59
COL18A1-203ENST00000359759 A0A1B0GU69 56 aa11.36□□□□□ -0.59
COL18A1-203ENST00000359759 SORL1Q92673 2214 aa11.36□□□□□ -0.59
COL18A1-203ENST00000359759 hDV103S1A0JD37 113 aa11.36□□□□□ -0.59
COL18A1-203ENST00000359759 A0A096LNJ9 63 aa11.36□□□□□ -0.59
COL18A1-203ENST00000359759 SPAG11AQ6PDA7 123 aa11.35□□□□□ -0.59
COL18A1-203ENST00000359759 LINC00337Q8N6G1 96 aa11.34□□□□□ -0.59
COL18A1-203ENST00000359759 KIAA0087Q14695 138 aa11.33□□□□□ -0.6
COL18A1-203ENST00000359759 CDIP1Q9H305 208 aa11.33□□□□□ -0.6
COL18A1-203ENST00000359759 HIVEP2P31629 2446 aa11.33□□□□□ -0.6
COL18A1-203ENST00000359759 SMCR5Q8TEV8 140 aa11.33□□□□□ -0.6
COL18A1-203ENST00000359759 LYPD5Q6UWN5 251 aa11.32□□□□□ -0.6
COL18A1-203ENST00000359759 TTC28Q96AY4 2481 aa11.32□□□□□ -0.6
COL18A1-203ENST00000359759 IGLV1-51P01701 117 aa11.3□□□□□ -0.6
COL18A1-203ENST00000359759 CXCL6P80162 114 aa11.3□□□□□ -0.6
COL18A1-203ENST00000359759 C22orf24Q9Y442 160 aa11.3□□□□□ -0.6
COL18A1-203ENST00000359759 IGLV8-61A0A075B6I0 122 aa11.3□□□□□ -0.6
COL18A1-203ENST00000359759 LIMD2Q9BT23 127 aa11.29□□□□□ -0.6
COL18A1-203ENST00000359759 CUL9Q8IWT3 2517 aa11.29□□□□□ -0.6
COL18A1-203ENST00000359759 PRRC2AP48634 2157 aaKnown RBP11.29□□□□□ -0.6
COL18A1-203ENST00000359759 PTPN13Q12923 2485 aa11.28□□□□□ -0.6
COL18A1-203ENST00000359759 KRTAP10-9P60411 292 aa11.28□□□□□ -0.6
COL18A1-203ENST00000359759 PRO0628Q9UI54 55 aa11.28□□□□□ -0.6
COL18A1-203ENST00000359759 LTBP2Q14767 1821 aa11.28□□□□□ -0.6
COL18A1-203ENST00000359759 NOTCH2Q04721 2471 aa11.28□□□□□ -0.6
COL18A1-203ENST00000359759 C1orf134Q5TEV5 83 aa11.28□□□□□ -0.6
COL18A1-203ENST00000359759 SPATA3Q8NHX4 192 aa11.28□□□□□ -0.6
COL18A1-203ENST00000359759 SPACA4Q8TDM5 124 aa11.26□□□□□ -0.61
COL18A1-203ENST00000359759 FSHBP01225 129 aa11.26□□□□□ -0.61
COL18A1-203ENST00000359759 AGRNO00468 2067 aa11.24□□□□□ -0.61
COL18A1-203ENST00000359759 SPINT4Q6UDR6 99 aa11.24□□□□□ -0.61
COL18A1-203ENST00000359759 A0A1B0GUV1 79 aa11.24□□□□□ -0.61
COL18A1-203ENST00000359759 MOBPQ13875 183 aa11.23□□□□□ -0.61
COL18A1-203ENST00000359759 COL5A1P20908 1838 aaPredicted RBP11.23□□□□□ -0.61
COL18A1-203ENST00000359759 ACYP2P14621 99 aa11.22□□□□□ -0.61
COL18A1-203ENST00000359759 C6orf48Q9UBA6 75 aa11.22□□□□□ -0.61
COL18A1-203ENST00000359759 CPAMD8Q8IZJ3 1885 aa11.21□□□□□ -0.61
COL18A1-203ENST00000359759 F8WDY8 70 aa11.2□□□□□ -0.62
COL18A1-203ENST00000359759 PTPRSQ13332 1948 aa11.2□□□□□ -0.62
COL18A1-203ENST00000359759 Q8N2B8 174 aa11.2□□□□□ -0.62
COL18A1-203ENST00000359759 FAM218AQ96MZ4 157 aa11.18□□□□□ -0.62
COL18A1-203ENST00000359759 ATP11AUNQ6ZP68 121 aa11.18□□□□□ -0.62
COL18A1-203ENST00000359759 RPL37AP61513 92 aaKnown RBP11.17□□□□□ -0.62
COL18A1-203ENST00000359759 SMCPP49901 116 aaPredicted RBP11.17□□□□□ -0.62
COL18A1-203ENST00000359759 COX8CQ7Z4L0 72 aa11.16□□□□□ -0.62
COL18A1-203ENST00000359759 LINC01561Q8N1V8 128 aa11.16□□□□□ -0.62
COL18A1-203ENST00000359759 LINC00167Q96N53 147 aa11.15□□□□□ -0.62
COL18A1-203ENST00000359759 TET2Q6N021 2002 aaPredicted RBP11.15□□□□□ -0.62
COL18A1-203ENST00000359759 CHTF8P0CG12 524 aa11.14□□□□□ -0.63
COL18A1-203ENST00000359759 C16orf95Q9H693 158 aa11.13□□□□□ -0.63
COL18A1-203ENST00000359759 LRP4O75096 1905 aa11.13□□□□□ -0.63
COL18A1-203ENST00000359759 CSPG4Q6UVK1 2322 aa11.13□□□□□ -0.63
COL18A1-203ENST00000359759 MUC4Q99102 2169 aa11.11□□□□□ -0.63
COL18A1-203ENST00000359759 TP53AIP1Q9HCN2 124 aa11.11□□□□□ -0.63
COL18A1-203ENST00000359759 TM2D3Q9BRN9 247 aa11.11□□□□□ -0.63
COL18A1-203ENST00000359759 PHF5AQ7RTV0 110 aaKnown RBP11.11□□□□□ -0.63
COL18A1-203ENST00000359759 C8orf87E5RJ46 101 aa11.1□□□□□ -0.63
COL18A1-203ENST00000359759 IGLV5-39A0A0G2JS06 123 aa11.1□□□□□ -0.63
COL18A1-203ENST00000359759 KIF25-AS1Q9Y6Z4 181 aa11.09□□□□□ -0.63
COL18A1-203ENST00000359759 Q6ZQT0 140 aa11.08□□□□□ -0.64
COL18A1-203ENST00000359759 MUC22E2RYF6 1773 aaPredicted RBP11.08□□□□□ -0.64
COL18A1-203ENST00000359759 A0A1W2PPR1 153 aa11.08□□□□□ -0.64
COL18A1-203ENST00000359759 LINC00476Q8WZB0 136 aa11.08□□□□□ -0.64
COL18A1-203ENST00000359759 FHL3Q13643 280 aa11.08□□□□□ -0.64
COL18A1-203ENST00000359759 ST20-AS1Q8NBB2 130 aa11.08□□□□□ -0.64
COL18A1-203ENST00000359759 C11orf72Q8NBR9 251 aa11.08□□□□□ -0.64
COL18A1-203ENST00000359759 LINC00313P59037 77 aa11.07□□□□□ -0.64
COL18A1-203ENST00000359759 SSBP3-AS1Q7Z2R9 100 aa11.07□□□□□ -0.64
COL18A1-203ENST00000359759 ACACBO00763 2458 aa11.07□□□□□ -0.64
COL18A1-203ENST00000359759 MDFIQ99750 246 aa11.07□□□□□ -0.64
COL18A1-203ENST00000359759 SONP18583 2426 aaKnown RBP11.06□□□□□ -0.64
COL18A1-203ENST00000359759 ELOF1P60002 83 aaKnown RBP11.06□□□□□ -0.64
COL18A1-203ENST00000359759 LINC01546A6NGU7 62 aa11.05□□□□□ -0.64
COL18A1-203ENST00000359759 IGHV3OR16-9A0A0B4J2B5 98 aa11.05□□□□□ -0.64
COL18A1-203ENST00000359759 SPG11Q96JI7 2443 aa11.04□□□□□ -0.64
COL18A1-203ENST00000359759 ADAMTS20P59510 1910 aa11.03□□□□□ -0.64
COL18A1-203ENST00000359759 Q96NJ1 140 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms