RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 GEMIN7Q9H840 131 aaKnown RBP9.63□□□□□ -0.87
VAPA-201ENST00000340541 PLA2G2DQ9UNK4 145 aa9.63□□□□□ -0.87
VAPA-201ENST00000340541 A0A1W2PNN7 141 aa9.62□□□□□ -0.87
VAPA-201ENST00000340541 HBDP02042 147 aa9.62□□□□□ -0.87
VAPA-201ENST00000340541 RPL18AQ02543 176 aaKnown RBP9.62□□□□□ -0.87
VAPA-201ENST00000340541 PDZD11Q5EBL8 140 aa9.62□□□□□ -0.87
VAPA-201ENST00000340541 RAB5BP61020 215 aa9.61□□□□□ -0.87
VAPA-201ENST00000340541 Q6ZRP5 223 aa9.61□□□□□ -0.87
VAPA-201ENST00000340541 Q8IZM0 81 aa9.61□□□□□ -0.87
VAPA-201ENST00000340541 LINC00469Q8N7U9 141 aa9.61□□□□□ -0.87
VAPA-201ENST00000340541 C7orf33Q8WU49 177 aa9.61□□□□□ -0.87
VAPA-201ENST00000340541 TRBV30A0A0K0K1B3 111 aa9.6□□□□□ -0.87
VAPA-201ENST00000340541 SMIM1B2RUZ4 78 aa9.6□□□□□ -0.87
VAPA-201ENST00000340541 TOMM7Q9P0U1 55 aa9.6□□□□□ -0.87
VAPA-201ENST00000340541 FAT3Q8TDW7 4589 aa9.59□□□□□ -0.87
VAPA-201ENST00000340541 C9orf116Q5BN46 136 aaPredicted RBP9.59□□□□□ -0.87
VAPA-201ENST00000340541 PACRGQ96M98 296 aaPredicted RBP9.59□□□□□ -0.87
VAPA-201ENST00000340541 PRSS2P07478 247 aa9.58□□□□□ -0.88
VAPA-201ENST00000340541 IGLC3P0DOY3 106 aa9.58□□□□□ -0.88
VAPA-201ENST00000340541 PRR3P79522 188 aaKnown RBP9.58□□□□□ -0.88
VAPA-201ENST00000340541 C6orf226Q5I0X4 101 aa9.58□□□□□ -0.88
VAPA-201ENST00000340541 TRGC2P03986 189 aa9.57□□□□□ -0.88
VAPA-201ENST00000340541 CKS1BP61024 79 aa9.57□□□□□ -0.88
VAPA-201ENST00000340541 CHCHD1Q96BP2 118 aaKnown RBP9.57□□□□□ -0.88
VAPA-201ENST00000340541 FAM168BA1KXE4 195 aa9.56□□□□□ -0.88
VAPA-201ENST00000340541 COLCA2A8K830 154 aa9.56□□□□□ -0.88
VAPA-201ENST00000340541 NDUFC2-KCTD14E9PQ53 114 aa9.56□□□□□ -0.88
VAPA-201ENST00000340541 ATP5LO75964 103 aa9.56□□□□□ -0.88
VAPA-201ENST00000340541 KRTAP7-1Q8IUC3 87 aa9.56□□□□□ -0.88
VAPA-201ENST00000340541 SPINK8P0C7L1 97 aa9.55□□□□□ -0.88
VAPA-201ENST00000340541 MT1HL1P0DM35 61 aa9.55□□□□□ -0.88
VAPA-201ENST00000340541 NDUFA6P56556 154 aa9.55□□□□□ -0.88
VAPA-201ENST00000340541 GAGE2EQ4V326 116 aa9.55□□□□□ -0.88
VAPA-201ENST00000340541 GAGE2DQ9UEU5 116 aa9.55□□□□□ -0.88
VAPA-201ENST00000340541 HMCN2Q8NDA2 5059 aa9.55□□□□□ -0.88
VAPA-201ENST00000340541 F8VRH5 84 aa9.54□□□□□ -0.88
VAPA-201ENST00000340541 SMCPP49901 116 aaPredicted RBP9.54□□□□□ -0.88
VAPA-201ENST00000340541 C9orf129Q5T035 196 aaKnown RBP9.54□□□□□ -0.88
VAPA-201ENST00000340541 COX7B2Q8TF08 81 aa9.54□□□□□ -0.88
VAPA-201ENST00000340541 ZNF22P17026 224 aaPredicted RBP9.53□□□□□ -0.88
VAPA-201ENST00000340541 CXCL5P42830 114 aa9.53□□□□□ -0.88
VAPA-201ENST00000340541 LINC00310P59036 64 aa9.53□□□□□ -0.88
VAPA-201ENST00000340541 PHF5AQ7RTV0 110 aaKnown RBP9.53□□□□□ -0.88
VAPA-201ENST00000340541 IGLV5-39A0A0G2JS06 123 aa9.52□□□□□ -0.89
VAPA-201ENST00000340541 BAGE3Q86Y29 109 aa9.52□□□□□ -0.89
VAPA-201ENST00000340541 C11orf86A6NJI1 115 aa9.51□□□□□ -0.89
VAPA-201ENST00000340541 H3BRM9 83 aa9.51□□□□□ -0.89
VAPA-201ENST00000340541 FAM19A2Q8N3H0 131 aa9.51□□□□□ -0.89
VAPA-201ENST00000340541 HSBP1O75506 76 aa9.5□□□□□ -0.89
VAPA-201ENST00000340541 FAM19A5Q7Z5A7 132 aaPredicted RBP9.5□□□□□ -0.89
VAPA-201ENST00000340541 KRTAP11-1Q8IUC1 163 aa9.5□□□□□ -0.89
VAPA-201ENST00000340541 IFI27L1Q96BM0 104 aa9.5□□□□□ -0.89
VAPA-201ENST00000340541 TRAV12-1A0A0B4J245 112 aa9.49□□□□□ -0.89
VAPA-201ENST00000340541 SCO1O75880 301 aa9.49□□□□□ -0.89
VAPA-201ENST00000340541 SERF1AO75920 110 aa9.49□□□□□ -0.89
VAPA-201ENST00000340541 PSORS1C2Q9UIG4 136 aa9.49□□□□□ -0.89
VAPA-201ENST00000340541 NUPR1O60356 82 aa9.48□□□□□ -0.89
VAPA-201ENST00000340541 SRSF9Q13242 221 aaKnown RBP eCLIP9.48□□□□□ -0.89
VAPA-201ENST00000340541 XAGE1AQ9HD64 81 aa9.48□□□□□ -0.89
VAPA-201ENST00000340541 CHTOPQ9Y3Y2 248 aaKnown RBP9.48□□□□□ -0.89
VAPA-201ENST00000340541 LCE2AQ5TA79 106 aaPredicted RBP9.47□□□□□ -0.89
VAPA-201ENST00000340541 M0QXV9 152 aa9.46□□□□□ -0.9
VAPA-201ENST00000340541 UBR4Q5T4S7 5183 aa9.46□□□□□ -0.9
VAPA-201ENST00000340541 TMEM170BQ5T4T1 132 aa9.45□□□□□ -0.9
VAPA-201ENST00000340541 SPINK6Q6UWN8 80 aa9.45□□□□□ -0.9
VAPA-201ENST00000340541 LINC01600Q96MT4 127 aa9.44□□□□□ -0.9
VAPA-201ENST00000340541 TMEM223A0PJW6 202 aa9.43□□□□□ -0.9
VAPA-201ENST00000340541 LEPROTL1O95214 131 aa9.42□□□□□ -0.9
VAPA-201ENST00000340541 ODF1Q14990 250 aa9.42□□□□□ -0.9
VAPA-201ENST00000340541 C1orf137Q5JT78 98 aa9.42□□□□□ -0.9
VAPA-201ENST00000340541 ZNF625Q96I27 306 aaPredicted RBP9.41□□□□□ -0.9
VAPA-201ENST00000340541 C22orf24Q9Y442 160 aa9.41□□□□□ -0.9
VAPA-201ENST00000340541 TNXBP22105 4242 aa9.41□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BKO60814 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BJP06899 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BOP23527 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BBP33778 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BDP58876 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BCP62807 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST2H2BEQ16778 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BHQ93079 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BNQ99877 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 HIST1H2BMQ99879 126 aa9.4□□□□□ -0.9
VAPA-201ENST00000340541 IGLV7-43P04211 117 aa9.39□□□□□ -0.91
VAPA-201ENST00000340541 PFN2P35080 140 aa9.39□□□□□ -0.91
VAPA-201ENST00000340541 UBE2BP63146 152 aa9.39□□□□□ -0.91
VAPA-201ENST00000340541 TP73-AS1Q9UF72 201 aa9.39□□□□□ -0.91
VAPA-201ENST00000340541 ERG28Q9UKR5 140 aa9.39□□□□□ -0.91
VAPA-201ENST00000340541 H0Y8G0 127 aa9.38□□□□□ -0.91
VAPA-201ENST00000340541 FABP4P15090 132 aa9.38□□□□□ -0.91
VAPA-201ENST00000340541 LCE2CQ5TA81 110 aa9.38□□□□□ -0.91
VAPA-201ENST00000340541 HSPB8Q9UJY1 196 aa9.38□□□□□ -0.91
VAPA-201ENST00000340541 IGLV5-37A0A075B6J1 123 aa9.37□□□□□ -0.91
VAPA-201ENST00000340541 COX17Q14061 63 aa9.37□□□□□ -0.91
VAPA-201ENST00000340541 SFTA2Q6UW10 78 aa9.37□□□□□ -0.91
VAPA-201ENST00000340541 REG3GQ6UW15 175 aa9.37□□□□□ -0.91
VAPA-201ENST00000340541 S100A1P23297 94 aa9.36□□□□□ -0.91
VAPA-201ENST00000340541 KRTAP10-8P60410 259 aa9.36□□□□□ -0.91
VAPA-201ENST00000340541 LBHQ53QV2 105 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms