RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TSHBP01222 138 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 TSPEAR-AS2P59090 65 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 A0A096LNJ9 63 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 TRBV27A0A0K0K1C4 114 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 NANOS2P60321 138 aaKnown RBP6.41□□□□□ -1.38
RTN3-202ENST00000339997 SOSTDC1Q6X4U4 206 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 ADAMTS20P59510 1910 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 PLA2G2AP14555 144 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 C9orf85Q96MD7 179 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 PPDPFQ9H3Y8 114 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 CELA1Q9UNI1 258 aa6.41□□□□□ -1.38
RTN3-202ENST00000339997 TMEM131Q92545 1883 aa6.4□□□□□ -1.38
RTN3-202ENST00000339997 PLA2G1BP04054 148 aaKnown RBP6.4□□□□□ -1.38
RTN3-202ENST00000339997 CDSNQ15517 529 aa6.4□□□□□ -1.38
RTN3-202ENST00000339997 HECTD1Q9ULT8 2610 aa6.4□□□□□ -1.38
RTN3-202ENST00000339997 CRYGDP07320 174 aa6.4□□□□□ -1.38
RTN3-202ENST00000339997 Q6Q795 121 aa6.4□□□□□ -1.38
RTN3-202ENST00000339997 TET2Q6N021 2002 aaPredicted RBP6.4□□□□□ -1.39
RTN3-202ENST00000339997 LST1O00453 97 aa6.4□□□□□ -1.39
RTN3-202ENST00000339997 Q6ZVQ6 151 aa6.4□□□□□ -1.39
RTN3-202ENST00000339997 WFDC13Q8IUB5 93 aa6.4□□□□□ -1.39
RTN3-202ENST00000339997 SMIM11BQ8TCY0 68 aa6.4□□□□□ -1.39
RTN3-202ENST00000339997 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.39□□□□□ -1.39
RTN3-202ENST00000339997 POLR2KP53803 58 aaKnown RBP6.39□□□□□ -1.39
RTN3-202ENST00000339997 FAM19A1Q7Z5A9 133 aa6.39□□□□□ -1.39
RTN3-202ENST00000339997 LOC107984640A0A0U1RRK4 108 aa6.39□□□□□ -1.39
RTN3-202ENST00000339997 BBC3Q96PG8 261 aaPredicted RBP6.39□□□□□ -1.39
RTN3-202ENST00000339997 DEFB114Q30KQ6 69 aa6.39□□□□□ -1.39
RTN3-202ENST00000339997 C9orf116Q5BN46 136 aaPredicted RBP6.39□□□□□ -1.39
RTN3-202ENST00000339997 LY6LH3BQJ8 138 aa6.39□□□□□ -1.39
RTN3-202ENST00000339997 FSHBP01225 129 aa6.39□□□□□ -1.39
RTN3-202ENST00000339997 EXPH5Q8NEV8 1989 aa6.39□□□□□ -1.39
RTN3-202ENST00000339997 LYRM9A8MSI8 78 aa6.38□□□□□ -1.39
RTN3-202ENST00000339997 ADAMTSL4-AS1Q5T5F5 129 aa6.38□□□□□ -1.39
RTN3-202ENST00000339997 LRBAP50851 2863 aa6.38□□□□□ -1.39
RTN3-202ENST00000339997 NDUFC2-KCTD14E9PQ53 114 aa6.37□□□□□ -1.39
RTN3-202ENST00000339997 FAM19A5Q7Z5A7 132 aaPredicted RBP6.37□□□□□ -1.39
RTN3-202ENST00000339997 TRBV6-8A0A0A6YYG3 113 aa6.37□□□□□ -1.39
RTN3-202ENST00000339997 DNAJC9-AS1A6NH13 148 aa6.37□□□□□ -1.39
RTN3-202ENST00000339997 X6R8D5 127 aa6.37□□□□□ -1.39
RTN3-202ENST00000339997 RPL37AP8A6NKH3 93 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 TIMM17BO60830 172 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 IGHV4-30-4P0DP06 118 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 IGHV4-31P0DP07 118 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 IGIPA6NJ69 53 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 A8MTW9 85 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 COX7CP15954 63 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 UBE2D2P62837 147 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.36□□□□□ -1.39
RTN3-202ENST00000339997 C4orf3Q8WVX3 66 aa6.36□□□□□ -1.39
RTN3-202ENST00000339997 C11orf45Q8TAV5 145 aa6.35□□□□□ -1.39
RTN3-202ENST00000339997 IBA57-AS1B1ANH7 110 aa6.35□□□□□ -1.39
RTN3-202ENST00000339997 COX6A2Q02221 97 aa6.34□□□□□ -1.39
RTN3-202ENST00000339997 TNFRSF13BO14836 293 aaPredicted RBP6.34□□□□□ -1.39
RTN3-202ENST00000339997 FAM19A3Q7Z5A8 133 aa6.34□□□□□ -1.39
RTN3-202ENST00000339997 ZNF706Q9Y5V0 76 aaPredicted RBP6.34□□□□□ -1.39
RTN3-202ENST00000339997 ANK3Q12955 4377 aaKnown RBP6.34□□□□□ -1.39
RTN3-202ENST00000339997 AVPP01185 164 aa6.34□□□□□ -1.39
RTN3-202ENST00000339997 FAM30AQ9NZY2 134 aa6.34□□□□□ -1.39
RTN3-202ENST00000339997 IGLV4-69A0A075B6H9 119 aa6.33□□□□□ -1.4
RTN3-202ENST00000339997 LINC00242Q5T6M2 205 aa6.33□□□□□ -1.4
RTN3-202ENST00000339997 KLLNB2CW77 178 aa6.33□□□□□ -1.4
RTN3-202ENST00000339997 A0A087WYN8 130 aa6.32□□□□□ -1.4
RTN3-202ENST00000339997 EBI3Q14213 229 aa6.32□□□□□ -1.4
RTN3-202ENST00000339997 UNQ6190/PRO20217Q6UXQ8 127 aa6.32□□□□□ -1.4
RTN3-202ENST00000339997 NDUFC1O43677 76 aa6.32□□□□□ -1.4
RTN3-202ENST00000339997 CSMD3Q7Z407 3707 aa6.31□□□□□ -1.4
RTN3-202ENST00000339997 IGLV2-18A0A075B6J9 118 aa6.31□□□□□ -1.4
RTN3-202ENST00000339997 LINC00959A0A1B0GUT2 108 aa6.31□□□□□ -1.4
RTN3-202ENST00000339997 ANKRD17O75179 2603 aaKnown RBP6.31□□□□□ -1.4
RTN3-202ENST00000339997 HILS1P60008 231 aa6.31□□□□□ -1.4
RTN3-202ENST00000339997 FBXL19-AS1Q494R0 122 aa6.31□□□□□ -1.4
RTN3-202ENST00000339997 PYGO1Q9Y3Y4 419 aa6.31□□□□□ -1.4
RTN3-202ENST00000339997 IGLV4-60A0A075B6I1 120 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 HRNRQ86YZ3 2850 aaPredicted RBP6.3□□□□□ -1.4
RTN3-202ENST00000339997 ATP5EP56381 51 aaPredicted RBP6.3□□□□□ -1.4
RTN3-202ENST00000339997 MRPS36P82909 103 aaKnown RBP6.3□□□□□ -1.4
RTN3-202ENST00000339997 DEFB116Q30KQ4 102 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 SHISA2Q6UWI4 295 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 CNFNQ9BYD5 112 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 CSDC2Q9Y534 153 aaKnown RBP6.3□□□□□ -1.4
RTN3-202ENST00000339997 ATP5EP2Q5VTU8 51 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 PMAIP1Q13794 54 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 Q6ZSN1 163 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 Q8N6K4 173 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 CDC42SE2Q9NRR3 84 aa6.3□□□□□ -1.4
RTN3-202ENST00000339997 CDIP1Q9H305 208 aa6.29□□□□□ -1.4
RTN3-202ENST00000339997 DEFB131BA0A096LNP1 70 aa6.29□□□□□ -1.4
RTN3-202ENST00000339997 LRRC75A-AS1Q8N1F1 130 aa6.29□□□□□ -1.4
RTN3-202ENST00000339997 CYSRT1A8MQ03 144 aa6.29□□□□□ -1.4
RTN3-202ENST00000339997 PSPHP1O15172 72 aa6.29□□□□□ -1.4
RTN3-202ENST00000339997 SMIM1B2RUZ4 78 aa6.28□□□□□ -1.4
RTN3-202ENST00000339997 Q6YL49 198 aa6.28□□□□□ -1.4
RTN3-202ENST00000339997 NTM-AS1Q6ZSK4 140 aa6.28□□□□□ -1.4
RTN3-202ENST00000339997 TMEM89A2RUT3 159 aa6.28□□□□□ -1.4
RTN3-202ENST00000339997 INAFM1C9JVW0 142 aa6.28□□□□□ -1.4
RTN3-202ENST00000339997 SMIM9A6NGZ8 99 aa6.28□□□□□ -1.4
RTN3-202ENST00000339997 SYCNQ0VAF6 134 aa6.28□□□□□ -1.4
RTN3-202ENST00000339997 A0A1W2PPR1 153 aa6.28□□□□□ -1.4
RTN3-202ENST00000339997 TRBV6-4A0A1B0GX49 114 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms