RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 OR13C6PQ8NH95 151 aa10.47□□□□□ -0.73
LIMS1-202ENST00000338045 LITAFQ99732 161 aa10.46□□□□□ -0.74
LIMS1-202ENST00000338045 LINC00588Q9Y4M8 146 aa10.46□□□□□ -0.74
LIMS1-202ENST00000338045 MEGF8Q7Z7M0 2845 aa10.45□□□□□ -0.74
LIMS1-202ENST00000338045 IGLV10-54A0A075B6I4 117 aa10.45□□□□□ -0.74
LIMS1-202ENST00000338045 DNAH10OSP0CZ25 163 aa10.45□□□□□ -0.74
LIMS1-202ENST00000338045 FOXI1Q12951 378 aa10.45□□□□□ -0.74
LIMS1-202ENST00000338045 SRSF9Q13242 221 aaKnown RBP eCLIP10.45□□□□□ -0.74
LIMS1-202ENST00000338045 COX7B2Q8TF08 81 aa10.45□□□□□ -0.74
LIMS1-202ENST00000338045 Q9H8V8 135 aa10.45□□□□□ -0.74
LIMS1-202ENST00000338045 TRAV8-4A0A0B4J246 113 aa10.44□□□□□ -0.74
LIMS1-202ENST00000338045 COX7A2LO14548 114 aa10.44□□□□□ -0.74
LIMS1-202ENST00000338045 TIMM17BO60830 172 aa10.44□□□□□ -0.74
LIMS1-202ENST00000338045 CRPP02741 224 aa10.44□□□□□ -0.74
LIMS1-202ENST00000338045 CCL18P55774 89 aa10.44□□□□□ -0.74
LIMS1-202ENST00000338045 UBE2WQ96B02 151 aa10.44□□□□□ -0.74
LIMS1-202ENST00000338045 H3BUT2 72 aa10.43□□□□□ -0.74
LIMS1-202ENST00000338045 MIAQ16674 131 aa10.43□□□□□ -0.74
LIMS1-202ENST00000338045 UPK3BQ9BT76 320 aa10.43□□□□□ -0.74
LIMS1-202ENST00000338045 DYNC2H1Q8NCM8 4307 aaKnown RBP10.43□□□□□ -0.74
LIMS1-202ENST00000338045 ADAMTSL4-AS1Q5T5F5 129 aa10.41□□□□□ -0.74
LIMS1-202ENST00000338045 Q8IZM0 81 aa10.41□□□□□ -0.74
LIMS1-202ENST00000338045 SPANXDQ9BXN6 97 aa10.41□□□□□ -0.74
LIMS1-202ENST00000338045 CDIP1Q9H305 208 aa10.41□□□□□ -0.74
LIMS1-202ENST00000338045 TOMM7Q9P0U1 55 aa10.41□□□□□ -0.74
LIMS1-202ENST00000338045 A0A1B0GWB2 263 aa10.4□□□□□ -0.75
LIMS1-202ENST00000338045 A0A1B0GX51 115 aa10.4□□□□□ -0.75
LIMS1-202ENST00000338045 SEC61GP60059 68 aa10.4□□□□□ -0.75
LIMS1-202ENST00000338045 KRTAP26-1Q6PEX3 210 aa10.4□□□□□ -0.75
LIMS1-202ENST00000338045 SFTA2Q6UW10 78 aa10.4□□□□□ -0.75
LIMS1-202ENST00000338045 APLNQ9ULZ1 77 aa10.4□□□□□ -0.75
LIMS1-202ENST00000338045 J3KT08 172 aa10.38□□□□□ -0.75
LIMS1-202ENST00000338045 MT-ATP8P03928 68 aa10.38□□□□□ -0.75
LIMS1-202ENST00000338045 MALP21145 153 aa10.38□□□□□ -0.75
LIMS1-202ENST00000338045 CIRBPQ14011 172 aaKnown RBP10.38□□□□□ -0.75
LIMS1-202ENST00000338045 KIAA0087Q14695 138 aa10.38□□□□□ -0.75
LIMS1-202ENST00000338045 NHP2Q9NX24 153 aaKnown RBP10.38□□□□□ -0.75
LIMS1-202ENST00000338045 C6orf226Q5I0X4 101 aa10.38□□□□□ -0.75
LIMS1-202ENST00000338045 Q6Q795 121 aa10.38□□□□□ -0.75
LIMS1-202ENST00000338045 KLK5Q9Y337 293 aaPredicted RBP10.38□□□□□ -0.75
LIMS1-202ENST00000338045 NUPR2A6NF83 97 aa10.37□□□□□ -0.75
LIMS1-202ENST00000338045 PRSS2P07478 247 aa10.37□□□□□ -0.75
LIMS1-202ENST00000338045 SMIM13P0DJ93 91 aa10.37□□□□□ -0.75
LIMS1-202ENST00000338045 NDUFV3P56181 108 aaKnown RBP10.37□□□□□ -0.75
LIMS1-202ENST00000338045 MUSTN1Q8IVN3 82 aa10.37□□□□□ -0.75
LIMS1-202ENST00000338045 CCDC179H3BU77 68 aa10.36□□□□□ -0.75
LIMS1-202ENST00000338045 APOMO95445 188 aa10.36□□□□□ -0.75
LIMS1-202ENST00000338045 IBA57-AS1B1ANH7 110 aa10.36□□□□□ -0.75
LIMS1-202ENST00000338045 RPS28P62857 69 aaKnown RBP10.36□□□□□ -0.75
LIMS1-202ENST00000338045 K7ERJ3 54 aa10.35□□□□□ -0.75
LIMS1-202ENST00000338045 IFITM1P13164 125 aa10.35□□□□□ -0.75
LIMS1-202ENST00000338045 CXCL5P42830 114 aa10.35□□□□□ -0.75
LIMS1-202ENST00000338045 MEIG1Q5JSS6 88 aa10.35□□□□□ -0.75
LIMS1-202ENST00000338045 C1orf43Q9BWL3 253 aa10.34□□□□□ -0.75
LIMS1-202ENST00000338045 XGP55808 180 aa10.34□□□□□ -0.75
LIMS1-202ENST00000338045 DAND5Q8N907 189 aa10.33□□□□□ -0.76
LIMS1-202ENST00000338045 DNAH1Q9P2D7 4330 aa10.33□□□□□ -0.76
LIMS1-202ENST00000338045 CFC1BP0CG36 223 aa10.32□□□□□ -0.76
LIMS1-202ENST00000338045 CFC1P0CG37 223 aa10.32□□□□□ -0.76
LIMS1-202ENST00000338045 SPAG11BQ08648 103 aa10.32□□□□□ -0.76
LIMS1-202ENST00000338045 C2orf82Q6UX34 121 aa10.32□□□□□ -0.76
LIMS1-202ENST00000338045 RAB37Q96AX2 223 aa10.32□□□□□ -0.76
LIMS1-202ENST00000338045 A0A0U1RRA0 63 aa10.32□□□□□ -0.76
LIMS1-202ENST00000338045 EIF4EBP3O60516 100 aaPredicted RBP10.32□□□□□ -0.76
LIMS1-202ENST00000338045 LINC00308Q8TCZ7 52 aa10.32□□□□□ -0.76
LIMS1-202ENST00000338045 DNAH7Q8WXX0 4024 aa10.31□□□□□ -0.76
LIMS1-202ENST00000338045 PLECQ15149 4684 aaKnown RBP10.31□□□□□ -0.76
LIMS1-202ENST00000338045 FAM19A5Q7Z5A7 132 aaPredicted RBP10.31□□□□□ -0.76
LIMS1-202ENST00000338045 CSMD3Q7Z407 3707 aa10.31□□□□□ -0.76
LIMS1-202ENST00000338045 IGKV2D-24A0A075B6R9 120 aa10.3□□□□□ -0.76
LIMS1-202ENST00000338045 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.3□□□□□ -0.76
LIMS1-202ENST00000338045 NAA38Q9BRA0 125 aaKnown RBP10.3□□□□□ -0.76
LIMS1-202ENST00000338045 A0A0B4J2C4 111 aa10.3□□□□□ -0.76
LIMS1-202ENST00000338045 SOSTDC1Q6X4U4 206 aa10.3□□□□□ -0.76
LIMS1-202ENST00000338045 COPS9Q8WXC6 57 aa10.3□□□□□ -0.76
LIMS1-202ENST00000338045 NPC2P61916 151 aa10.29□□□□□ -0.76
LIMS1-202ENST00000338045 WFDC2Q14508 124 aa10.29□□□□□ -0.76
LIMS1-202ENST00000338045 TTC32Q5I0X7 151 aa10.29□□□□□ -0.76
LIMS1-202ENST00000338045 MIR7-3HGQ8N6C7 128 aa10.29□□□□□ -0.76
LIMS1-202ENST00000338045 Q9HAA7 133 aa10.29□□□□□ -0.76
LIMS1-202ENST00000338045 FBN3Q75N90 2809 aa10.29□□□□□ -0.76
LIMS1-202ENST00000338045 LINC00158P58513 81 aa10.28□□□□□ -0.76
LIMS1-202ENST00000338045 C15orf56Q8N910 161 aa10.28□□□□□ -0.76
LIMS1-202ENST00000338045 NTN5Q8WTR8 489 aaPredicted RBP10.28□□□□□ -0.76
LIMS1-202ENST00000338045 C9JAW5 83 aa10.27□□□□□ -0.76
LIMS1-202ENST00000338045 GAGE2BQ13066 116 aa10.27□□□□□ -0.76
LIMS1-202ENST00000338045 ETDBQ3ZM63 59 aa10.27□□□□□ -0.76
LIMS1-202ENST00000338045 GAGE2EQ4V326 116 aa10.27□□□□□ -0.76
LIMS1-202ENST00000338045 UBE2DNLQ8IWF7 75 aa10.27□□□□□ -0.76
LIMS1-202ENST00000338045 C6orf223Q8N319 242 aa10.27□□□□□ -0.76
LIMS1-202ENST00000338045 GAGE2DQ9UEU5 116 aa10.27□□□□□ -0.76
LIMS1-202ENST00000338045 H3BMG7 143 aa10.27□□□□□ -0.77
LIMS1-202ENST00000338045 COX17Q14061 63 aa10.27□□□□□ -0.77
LIMS1-202ENST00000338045 PFN2P35080 140 aa10.26□□□□□ -0.77
LIMS1-202ENST00000338045 RMI2Q96E14 147 aa10.26□□□□□ -0.77
LIMS1-202ENST00000338045 LINC00526Q96FQ7 95 aa10.26□□□□□ -0.77
LIMS1-202ENST00000338045 PRO1854Q9UHT4 67 aa10.26□□□□□ -0.77
LIMS1-202ENST00000338045 STARD9Q9P2P6 4700 aa10.26□□□□□ -0.77
LIMS1-202ENST00000338045 GVQW2A0A096LPI5 108 aaPredicted RBP10.25□□□□□ -0.77
LIMS1-202ENST00000338045 C10orf25Q5T742 122 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms