RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HIVEP3Q5T1R4 2406 aa9.05□□□□□ -0.96
SDC3-201ENST00000336798 A0A087WSZ3 146 aa9.04□□□□□ -0.96
SDC3-201ENST00000336798 EXPH5Q8NEV8 1989 aa9.04□□□□□ -0.96
SDC3-201ENST00000336798 SMIM1B2RUZ4 78 aa9.04□□□□□ -0.96
SDC3-201ENST00000336798 EGFEM1PQ0D2K5 195 aa9.04□□□□□ -0.96
SDC3-201ENST00000336798 CRYGAP11844 174 aa9.04□□□□□ -0.96
SDC3-201ENST00000336798 PRLHP81277 87 aa9.04□□□□□ -0.96
SDC3-201ENST00000336798 CHCHD7Q9BUK0 85 aa9.04□□□□□ -0.96
SDC3-201ENST00000336798 FHL2Q14192 279 aa9.03□□□□□ -0.96
SDC3-201ENST00000336798 LINC00575Q6W349 94 aa9.03□□□□□ -0.96
SDC3-201ENST00000336798 IGIPA6NJ69 53 aa9.03□□□□□ -0.96
SDC3-201ENST00000336798 PRRC2AP48634 2157 aaKnown RBP9.02□□□□□ -0.96
SDC3-201ENST00000336798 COL4A4P53420 1690 aaPredicted RBP9.02□□□□□ -0.96
SDC3-201ENST00000336798 TSPEAR-AS2P59090 65 aa9.02□□□□□ -0.97
SDC3-201ENST00000336798 Q6ZSN1 163 aa9.02□□□□□ -0.97
SDC3-201ENST00000336798 C2orf48Q96LS8 159 aa9.02□□□□□ -0.97
SDC3-201ENST00000336798 TRBV7-7A0A0K0K1E9 115 aa9.01□□□□□ -0.97
SDC3-201ENST00000336798 Q9UF83 564 aa9.01□□□□□ -0.97
SDC3-201ENST00000336798 H0Y9P7 68 aa9.01□□□□□ -0.97
SDC3-201ENST00000336798 CUL9Q8IWT3 2517 aa9.01□□□□□ -0.97
SDC3-201ENST00000336798 ADAMTSL4-AS1Q5T5F5 129 aa9.01□□□□□ -0.97
SDC3-201ENST00000336798 HCFC1P51610 2035 aa9□□□□□ -0.97
SDC3-201ENST00000336798 RAI1Q7Z5J4 1906 aaPredicted RBP9□□□□□ -0.97
SDC3-201ENST00000336798 CEP192Q8TEP8 1941 aa9□□□□□ -0.97
SDC3-201ENST00000336798 RPS28P62857 69 aaKnown RBP9□□□□□ -0.97
SDC3-201ENST00000336798 IGLV1-51P01701 117 aa9□□□□□ -0.97
SDC3-201ENST00000336798 IGKV2D-30A0A075B6S6 120 aa8.99□□□□□ -0.97
SDC3-201ENST00000336798 IGKV2-30P06310 120 aa8.99□□□□□ -0.97
SDC3-201ENST00000336798 HCG22E2RYF7 251 aa8.99□□□□□ -0.97
SDC3-201ENST00000336798 URB1-AS1Q96HZ7 61 aa8.98□□□□□ -0.97
SDC3-201ENST00000336798 Q8N3U1 123 aa8.98□□□□□ -0.97
SDC3-201ENST00000336798 LYPD5Q6UWN5 251 aa8.97□□□□□ -0.97
SDC3-201ENST00000336798 ACACBO00763 2458 aa8.97□□□□□ -0.97
SDC3-201ENST00000336798 PLA2G1BP04054 148 aaKnown RBP8.97□□□□□ -0.97
SDC3-201ENST00000336798 F8WDY8 70 aa8.96□□□□□ -0.97
SDC3-201ENST00000336798 Q6ZRU5 148 aa8.96□□□□□ -0.97
SDC3-201ENST00000336798 LINC00337Q8N6G1 96 aa8.96□□□□□ -0.97
SDC3-201ENST00000336798 LTBP2Q14767 1821 aa8.96□□□□□ -0.98
SDC3-201ENST00000336798 SPACA4Q8TDM5 124 aa8.95□□□□□ -0.98
SDC3-201ENST00000336798 C7orf65Q6ZTY9 151 aa8.94□□□□□ -0.98
SDC3-201ENST00000336798 ANKHD1Q8IWZ3 2542 aaKnown RBP8.93□□□□□ -0.98
SDC3-201ENST00000336798 ATG2AQ2TAZ0 1938 aa8.92□□□□□ -0.98
SDC3-201ENST00000336798 SMCR5Q8TEV8 140 aa8.92□□□□□ -0.98
SDC3-201ENST00000336798 A0A1W2PPR1 153 aa8.91□□□□□ -0.98
SDC3-201ENST00000336798 LINC01561Q8N1V8 128 aa8.91□□□□□ -0.98
SDC3-201ENST00000336798 MUC7Q8TAX7 377 aa8.91□□□□□ -0.98
SDC3-201ENST00000336798 MUC4Q99102 2169 aa8.91□□□□□ -0.98
SDC3-201ENST00000336798 TMEM254Q8TBM7 123 aa8.91□□□□□ -0.98
SDC3-201ENST00000336798 C22orf24Q9Y442 160 aa8.91□□□□□ -0.98
SDC3-201ENST00000336798 CACNA1AO00555 2505 aa8.9□□□□□ -0.98
SDC3-201ENST00000336798 CNFNQ9BYD5 112 aa8.9□□□□□ -0.99
SDC3-201ENST00000336798 MDFIQ99750 246 aa8.89□□□□□ -0.99
SDC3-201ENST00000336798 CXCL6P80162 114 aa8.89□□□□□ -0.99
SDC3-201ENST00000336798 EML5Q05BV3 1969 aa8.89□□□□□ -0.99
SDC3-201ENST00000336798 FAM19A4Q96LR4 140 aa8.89□□□□□ -0.99
SDC3-201ENST00000336798 LIMD2Q9BT23 127 aa8.88□□□□□ -0.99
SDC3-201ENST00000336798 C16orf95Q9H693 158 aa8.88□□□□□ -0.99
SDC3-201ENST00000336798 SMCPP49901 116 aaPredicted RBP8.88□□□□□ -0.99
SDC3-201ENST00000336798 MOBPQ13875 183 aa8.88□□□□□ -0.99
SDC3-201ENST00000336798 FHL3Q13643 280 aa8.87□□□□□ -0.99
SDC3-201ENST00000336798 C1orf64Q8NEQ6 169 aa8.87□□□□□ -0.99
SDC3-201ENST00000336798 LINC00846Q9NV44 126 aa8.87□□□□□ -0.99
SDC3-201ENST00000336798 AMELXQ99217 191 aa8.86□□□□□ -0.99
SDC3-201ENST00000336798 CHTF8P0CG12 524 aa8.86□□□□□ -0.99
SDC3-201ENST00000336798 KIAA0087Q14695 138 aa8.86□□□□□ -0.99
SDC3-201ENST00000336798 TET2Q6N021 2002 aaPredicted RBP8.86□□□□□ -0.99
SDC3-201ENST00000336798 SMIM29Q86T20 159 aa8.85□□□□□ -0.99
SDC3-201ENST00000336798 MYO18BQ8IUG5 2567 aa8.85□□□□□ -0.99
SDC3-201ENST00000336798 AGRNO00468 2067 aa8.85□□□□□ -0.99
SDC3-201ENST00000336798 ABCA2Q9BZC7 2435 aa8.85□□□□□ -0.99
SDC3-201ENST00000336798 PIEZO1Q92508 2521 aa8.85□□□□□ -0.99
SDC3-201ENST00000336798 CD164Q04900 197 aa8.84□□□□□ -0.99
SDC3-201ENST00000336798 A0A1B0GU69 56 aa8.83□□□□□ -1
SDC3-201ENST00000336798 hDV103S1A0JD37 113 aa8.83□□□□□ -1
SDC3-201ENST00000336798 IGLV8-61A0A075B6I0 122 aa8.83□□□□□ -1
SDC3-201ENST00000336798 PRO0461Q9UI25 63 aa8.82□□□□□ -1
SDC3-201ENST00000336798 DOPEY1Q5JWR5 2465 aa8.82□□□□□ -1
SDC3-201ENST00000336798 SPAG11AQ6PDA7 123 aa8.82□□□□□ -1
SDC3-201ENST00000336798 A0A1B0GUV1 79 aa8.81□□□□□ -1
SDC3-201ENST00000336798 LINC00336Q6ZUF6 198 aa8.8□□□□□ -1
SDC3-201ENST00000336798 PHF5AQ7RTV0 110 aaKnown RBP8.8□□□□□ -1
SDC3-201ENST00000336798 COL5A1P20908 1838 aaPredicted RBP8.8□□□□□ -1
SDC3-201ENST00000336798 NAV3Q8IVL0 2385 aa8.79□□□□□ -1
SDC3-201ENST00000336798 SRCAPQ6ZRS2 3230 aa8.79□□□□□ -1
SDC3-201ENST00000336798 LINC00167Q96N53 147 aa8.78□□□□□ -1
SDC3-201ENST00000336798 Q8N2B8 174 aa8.78□□□□□ -1
SDC3-201ENST00000336798 CCDC168Q8NDH2 2452 aa8.78□□□□□ -1
SDC3-201ENST00000336798 A0A096LNJ9 63 aa8.78□□□□□ -1
SDC3-201ENST00000336798 NHLRC4P0CG21 123 aaPredicted RBP8.78□□□□□ -1
SDC3-201ENST00000336798 SPINT4Q6UDR6 99 aa8.76□□□□□ -1.01
SDC3-201ENST00000336798 SPATA3Q8NHX4 192 aa8.76□□□□□ -1.01
SDC3-201ENST00000336798 RPL37AP61513 92 aaKnown RBP8.75□□□□□ -1.01
SDC3-201ENST00000336798 PTPRSQ13332 1948 aa8.75□□□□□ -1.01
SDC3-201ENST00000336798 NAV2Q8IVL1 2488 aa8.74□□□□□ -1.01
SDC3-201ENST00000336798 FAM229AH3BQW9 127 aa8.74□□□□□ -1.01
SDC3-201ENST00000336798 C6orf48Q9UBA6 75 aa8.74□□□□□ -1.01
SDC3-201ENST00000336798 C2CD3Q4AC94 2353 aa8.74□□□□□ -1.01
SDC3-201ENST00000336798 C8orf87E5RJ46 101 aa8.73□□□□□ -1.01
SDC3-201ENST00000336798 C16orf90A8MZG2 172 aa8.73□□□□□ -1.01
SDC3-201ENST00000336798 RTL8CO15255 209 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms