RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 C15orf56Q8N910 161 aa9.9□□□□□ -0.82
CCDC88C-202ENST00000334448 TM2D2Q9BX73 214 aa9.9□□□□□ -0.82
CCDC88C-202ENST00000334448 TOMM7Q9P0U1 55 aa9.9□□□□□ -0.82
CCDC88C-202ENST00000334448 CFAP161Q6P656 301 aa9.89□□□□□ -0.83
CCDC88C-202ENST00000334448 SPANXDQ9BXN6 97 aa9.89□□□□□ -0.83
CCDC88C-202ENST00000334448 PPDPFQ9H3Y8 114 aa9.89□□□□□ -0.83
CCDC88C-202ENST00000334448 SPANXCQ9NY87 97 aa9.89□□□□□ -0.83
CCDC88C-202ENST00000334448 BVES-AS1Q5T3Y7 98 aa9.88□□□□□ -0.83
CCDC88C-202ENST00000334448 C2orf48Q96LS8 159 aa9.88□□□□□ -0.83
CCDC88C-202ENST00000334448 PTTG1IPP53801 180 aa9.87□□□□□ -0.83
CCDC88C-202ENST00000334448 NTN5Q8WTR8 489 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-202ENST00000334448 SNHG12Q9BXW3 62 aa9.87□□□□□ -0.83
CCDC88C-202ENST00000334448 CKS1BP61024 79 aa9.86□□□□□ -0.83
CCDC88C-202ENST00000334448 CIRBPQ14011 172 aaKnown RBP9.86□□□□□ -0.83
CCDC88C-202ENST00000334448 Q6ZR54 194 aa9.86□□□□□ -0.83
CCDC88C-202ENST00000334448 LINC00476Q8WZB0 136 aa9.86□□□□□ -0.83
CCDC88C-202ENST00000334448 IFITM1P13164 125 aa9.85□□□□□ -0.83
CCDC88C-202ENST00000334448 CEND1Q8N111 149 aa9.85□□□□□ -0.83
CCDC88C-202ENST00000334448 HIST1H4GQ99525 98 aa9.85□□□□□ -0.83
CCDC88C-202ENST00000334448 EREGO14944 169 aa9.84□□□□□ -0.83
CCDC88C-202ENST00000334448 HINT1P49773 126 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-202ENST00000334448 COX17Q14061 63 aa9.84□□□□□ -0.83
CCDC88C-202ENST00000334448 LBHQ53QV2 105 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-202ENST00000334448 ADAMTSL4-AS1Q5T5F5 129 aa9.84□□□□□ -0.83
CCDC88C-202ENST00000334448 C2orf82Q6UX34 121 aa9.84□□□□□ -0.83
CCDC88C-202ENST00000334448 Q6ZRN7 208 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-202ENST00000334448 USP17L23D6RBM5 183 aa9.83□□□□□ -0.84
CCDC88C-202ENST00000334448 ZNF561-AS1K7EIQ3 104 aa9.83□□□□□ -0.84
CCDC88C-202ENST00000334448 SRSF9Q13242 221 aaKnown RBP eCLIP9.83□□□□□ -0.84
CCDC88C-202ENST00000334448 MEIG1Q5JSS6 88 aa9.83□□□□□ -0.84
CCDC88C-202ENST00000334448 ERG28Q9UKR5 140 aa9.83□□□□□ -0.84
CCDC88C-202ENST00000334448 DNAH10Q8IVF4 4471 aa9.82□□□□□ -0.84
CCDC88C-202ENST00000334448 TRBV30A0A0K0K1B3 111 aa9.82□□□□□ -0.84
CCDC88C-202ENST00000334448 COPS9Q8WXC6 57 aa9.82□□□□□ -0.84
CCDC88C-202ENST00000334448 SMIM13P0DJ93 91 aa9.81□□□□□ -0.84
CCDC88C-202ENST00000334448 GCSHP23434 173 aa9.81□□□□□ -0.84
CCDC88C-202ENST00000334448 FXYD2P54710 66 aa9.81□□□□□ -0.84
CCDC88C-202ENST00000334448 C6orf223Q8N319 242 aa9.81□□□□□ -0.84
CCDC88C-202ENST00000334448 A0A1B0GWB2 263 aa9.8□□□□□ -0.84
CCDC88C-202ENST00000334448 RNF151Q2KHN1 245 aa9.8□□□□□ -0.84
CCDC88C-202ENST00000334448 HIGD2BQ4VC39 106 aa9.8□□□□□ -0.84
CCDC88C-202ENST00000334448 C10orf25Q5T742 122 aa9.8□□□□□ -0.84
CCDC88C-202ENST00000334448 UNQ6190/PRO20217Q6UXQ8 127 aa9.8□□□□□ -0.84
CCDC88C-202ENST00000334448 DNAH2Q9P225 4427 aa9.8□□□□□ -0.84
CCDC88C-202ENST00000334448 LOC107984156A0A0G2JMH3 177 aa9.79□□□□□ -0.84
CCDC88C-202ENST00000334448 TMEM238LA0A1B0GVL6 79 aa9.79□□□□□ -0.84
CCDC88C-202ENST00000334448 A6NJY4 79 aa9.79□□□□□ -0.84
CCDC88C-202ENST00000334448 ARL17AQ8IVW1 177 aa9.79□□□□□ -0.84
CCDC88C-202ENST00000334448 LINC00308Q8TCZ7 52 aa9.79□□□□□ -0.84
CCDC88C-202ENST00000334448 CAMK2N2Q96S95 79 aa9.79□□□□□ -0.84
CCDC88C-202ENST00000334448 C6orf48Q9UBA6 75 aa9.79□□□□□ -0.84
CCDC88C-202ENST00000334448 A6NDN8 102 aa9.78□□□□□ -0.84
CCDC88C-202ENST00000334448 RPL24P83731 157 aaKnown RBP9.78□□□□□ -0.84
CCDC88C-202ENST00000334448 C14orf177Q52M58 125 aa9.78□□□□□ -0.84
CCDC88C-202ENST00000334448 COL5A1-AS1Q5SY13 56 aa9.78□□□□□ -0.84
CCDC88C-202ENST00000334448 MUSTN1Q8IVN3 82 aa9.78□□□□□ -0.84
CCDC88C-202ENST00000334448 MIR7-3HGQ8N6C7 128 aa9.78□□□□□ -0.84
CCDC88C-202ENST00000334448 LINC00526Q96FQ7 95 aa9.78□□□□□ -0.84
CCDC88C-202ENST00000334448 KMT2AQ03164 3969 aa9.77□□□□□ -0.84
CCDC88C-202ENST00000334448 LRCOL1A6NCL2 159 aa9.77□□□□□ -0.85
CCDC88C-202ENST00000334448 PSCAO43653 123 aa9.77□□□□□ -0.85
CCDC88C-202ENST00000334448 LY6G6CO95867 125 aa9.77□□□□□ -0.85
CCDC88C-202ENST00000334448 LINC00158P58513 81 aa9.77□□□□□ -0.85
CCDC88C-202ENST00000334448 SYCNQ0VAF6 134 aa9.77□□□□□ -0.85
CCDC88C-202ENST00000334448 Q6ZRU5 148 aa9.77□□□□□ -0.85
CCDC88C-202ENST00000334448 WFDC2Q14508 124 aa9.76□□□□□ -0.85
CCDC88C-202ENST00000334448 BATFQ16520 125 aa9.76□□□□□ -0.85
CCDC88C-202ENST00000334448 SOSTDC1Q6X4U4 206 aa9.76□□□□□ -0.85
CCDC88C-202ENST00000334448 DAND5Q8N907 189 aa9.76□□□□□ -0.85
CCDC88C-202ENST00000334448 SACSQ9NZJ4 4579 aa9.75□□□□□ -0.85
CCDC88C-202ENST00000334448 CNBPP62633 177 aaKnown RBP9.75□□□□□ -0.85
CCDC88C-202ENST00000334448 DNAH17Q9UFH2 4485 aa9.74□□□□□ -0.85
CCDC88C-202ENST00000334448 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-202ENST00000334448 A4D1N5 150 aa9.74□□□□□ -0.85
CCDC88C-202ENST00000334448 EIF4EBP3O60516 100 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-202ENST00000334448 SLPIP03973 132 aa9.74□□□□□ -0.85
CCDC88C-202ENST00000334448 TLX1NBP0CAT3 122 aa9.74□□□□□ -0.85
CCDC88C-202ENST00000334448 PFN2P35080 140 aa9.74□□□□□ -0.85
CCDC88C-202ENST00000334448 CARD19Q96LW7 228 aa9.74□□□□□ -0.85
CCDC88C-202ENST00000334448 A0A0B4J2C4 111 aa9.73□□□□□ -0.85
CCDC88C-202ENST00000334448 A0A0U1RRA0 63 aa9.73□□□□□ -0.85
CCDC88C-202ENST00000334448 M0R2N4 97 aa9.73□□□□□ -0.85
CCDC88C-202ENST00000334448 C9orf116Q5BN46 136 aaPredicted RBP9.73□□□□□ -0.85
CCDC88C-202ENST00000334448 NDUFC2-KCTD14E9PQ53 114 aa9.72□□□□□ -0.85
CCDC88C-202ENST00000334448 NHP2Q9NX24 153 aaKnown RBP9.72□□□□□ -0.85
CCDC88C-202ENST00000334448 LECT2O14960 151 aa9.71□□□□□ -0.86
CCDC88C-202ENST00000334448 CFC1BP0CG36 223 aa9.71□□□□□ -0.86
CCDC88C-202ENST00000334448 CFC1P0CG37 223 aa9.71□□□□□ -0.86
CCDC88C-202ENST00000334448 C1orf134Q5TEV5 83 aa9.71□□□□□ -0.86
CCDC88C-202ENST00000334448 SND1-IT1Q9HBX3 110 aa9.71□□□□□ -0.86
CCDC88C-202ENST00000334448 NDUFC2O95298 119 aa9.7□□□□□ -0.86
CCDC88C-202ENST00000334448 TAX1BP3O14907 124 aa9.69□□□□□ -0.86
CCDC88C-202ENST00000334448 A0A087WTM6 91 aa9.68□□□□□ -0.86
CCDC88C-202ENST00000334448 K7ERJ3 54 aa9.68□□□□□ -0.86
CCDC88C-202ENST00000334448 NPC2P61916 151 aa9.68□□□□□ -0.86
CCDC88C-202ENST00000334448 LCE6AA0A183 80 aa9.67□□□□□ -0.86
CCDC88C-202ENST00000334448 Q8N814 137 aa9.67□□□□□ -0.86
CCDC88C-202ENST00000334448 Q6ZRP5 223 aa9.66□□□□□ -0.86
CCDC88C-202ENST00000334448 PRO1854Q9UHT4 67 aa9.66□□□□□ -0.86
CCDC88C-202ENST00000334448 RAB37Q96AX2 223 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms