RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 MYMXA0A1B0GTQ4 84 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 MRPS36P82909 103 aaKnown RBP6.87□□□□□ -1.31
HMGB3-201ENST00000325307 WFDC10BQ8IUB3 73 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 Q8N3U1 123 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 CDC42SE2Q9NRR3 84 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 TGP01266 2768 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 TRAV13-1A0A0B4J241 112 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 IGHV3-30P01768 117 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 IGHV3-33P01772 117 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 ANGP03950 147 aaKnown RBP6.87□□□□□ -1.31
HMGB3-201ENST00000325307 IGHV3-30-3P0DP02 117 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 IGHV3-30-5P0DP03 117 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 SNCGO76070 127 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 CLPSL2Q6UWE3 100 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 FAM19A1Q7Z5A9 133 aa6.87□□□□□ -1.31
HMGB3-201ENST00000325307 PLEKHB2Q96CS7 222 aa6.86□□□□□ -1.31
HMGB3-201ENST00000325307 AMELXQ99217 191 aa6.86□□□□□ -1.31
HMGB3-201ENST00000325307 HIST1H4GQ99525 98 aa6.86□□□□□ -1.31
HMGB3-201ENST00000325307 UBE2DNLQ8IWF7 75 aa6.86□□□□□ -1.31
HMGB3-201ENST00000325307 PKIGQ9Y2B9 76 aa6.86□□□□□ -1.31
HMGB3-201ENST00000325307 FAM236AA0A1B0GUQ0 79 aa6.85□□□□□ -1.31
HMGB3-201ENST00000325307 A0A1B0GUV1 79 aa6.85□□□□□ -1.31
HMGB3-201ENST00000325307 FAM236BA0A1B0GV22 79 aa6.85□□□□□ -1.31
HMGB3-201ENST00000325307 LINC00588Q9Y4M8 146 aa6.85□□□□□ -1.31
HMGB3-201ENST00000325307 A0A0J9YXV3 536 aa6.85□□□□□ -1.31
HMGB3-201ENST00000325307 APLNQ9ULZ1 77 aa6.85□□□□□ -1.31
HMGB3-201ENST00000325307 LINC00269Q8N2A0 174 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 C3orf22Q8N5N4 141 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 MUC7Q8TAX7 377 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 KLK12Q9UKR0 248 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 LYRM7Q5U5X0 104 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 LINC00526Q96FQ7 95 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 TCL1BO95988 128 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 ZNF22P17026 224 aaPredicted RBP6.84□□□□□ -1.31
HMGB3-201ENST00000325307 TMEM170BQ5T4T1 132 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 WWC2-AS2Q96NR7 200 aa6.84□□□□□ -1.31
HMGB3-201ENST00000325307 ANKRD29Q8N6D5 301 aa6.83□□□□□ -1.32
HMGB3-201ENST00000325307 DPH3Q96FX2 82 aa6.83□□□□□ -1.32
HMGB3-201ENST00000325307 TMEM223A0PJW6 202 aa6.83□□□□□ -1.32
HMGB3-201ENST00000325307 RPL13AP40429 203 aaKnown RBP6.83□□□□□ -1.32
HMGB3-201ENST00000325307 ZNF815PA8K554 130 aa6.82□□□□□ -1.32
HMGB3-201ENST00000325307 CRPP02741 224 aa6.82□□□□□ -1.32
HMGB3-201ENST00000325307 REG3AQ06141 175 aa6.82□□□□□ -1.32
HMGB3-201ENST00000325307 C9orf153Q5TBE3 101 aa6.82□□□□□ -1.32
HMGB3-201ENST00000325307 UBE2WQ96B02 151 aa6.82□□□□□ -1.32
HMGB3-201ENST00000325307 IGLV10-54A0A075B6I4 117 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 FAM236DA0A1B0GTK5 79 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 UQCRQO14949 82 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 FAM236CP0DP71 79 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 PSMB2P49721 201 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 SS18Q15532 418 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 C4orf48Q5BLP8 95 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 C1orf195Q5TG92 126 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 LINC00959A0A1B0GUT2 108 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 LINC01556Q5JQF7 62 aa6.81□□□□□ -1.32
HMGB3-201ENST00000325307 XCL1P47992 114 aa6.8□□□□□ -1.32
HMGB3-201ENST00000325307 LINC00242Q5T6M2 205 aa6.8□□□□□ -1.32
HMGB3-201ENST00000325307 Q9H8V8 135 aa6.8□□□□□ -1.32
HMGB3-201ENST00000325307 IGHV3-64A0A075B6Q5 118 aa6.8□□□□□ -1.32
HMGB3-201ENST00000325307 DNAH10OSP0CZ25 163 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 COX6A2Q02221 97 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 C10orf126Q8N4M7 172 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 J3QQQ9 107 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 CRYGAP11844 174 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 HERVK_113P61574 105 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 CFC1BP0CG36 223 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 CFC1P0CG37 223 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 UPK3BQ9BT76 320 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 CDKN2A-AS1Q9UH64 79 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 TENM2Q9NT68 2774 aa6.79□□□□□ -1.32
HMGB3-201ENST00000325307 TRBV7-7A0A0K0K1E9 115 aa6.78□□□□□ -1.32
HMGB3-201ENST00000325307 LEPROTO15243 131 aa6.78□□□□□ -1.32
HMGB3-201ENST00000325307 Q9HAA7 133 aa6.78□□□□□ -1.32
HMGB3-201ENST00000325307 TRAV8-3A0A0A6YYJ7 113 aa6.78□□□□□ -1.32
HMGB3-201ENST00000325307 ENHOQ6UWT2 76 aa6.78□□□□□ -1.32
HMGB3-201ENST00000325307 CHCHD10Q8WYQ3 142 aaPredicted RBP6.78□□□□□ -1.32
HMGB3-201ENST00000325307 EIF4EBP3O60516 100 aaPredicted RBP6.77□□□□□ -1.33
HMGB3-201ENST00000325307 C5orf38Q86SI9 138 aa6.77□□□□□ -1.33
HMGB3-201ENST00000325307 PRR34Q9NV39 138 aa6.77□□□□□ -1.33
HMGB3-201ENST00000325307 FAM240AA0A1B0GVK7 77 aa6.77□□□□□ -1.33
HMGB3-201ENST00000325307 SLC25A20O43772 301 aa6.77□□□□□ -1.33
HMGB3-201ENST00000325307 CSMD3Q7Z407 3707 aa6.77□□□□□ -1.33
HMGB3-201ENST00000325307 SCGB1D4Q6XE38 83 aa6.77□□□□□ -1.33
HMGB3-201ENST00000325307 SCGB1C2P0DMR2 95 aa6.76□□□□□ -1.33
HMGB3-201ENST00000325307 MIAQ16674 131 aa6.76□□□□□ -1.33
HMGB3-201ENST00000325307 IGLV5-45A0A087WSX0 123 aa6.76□□□□□ -1.33
HMGB3-201ENST00000325307 FAM19A3Q7Z5A8 133 aa6.76□□□□□ -1.33
HMGB3-201ENST00000325307 C2orf48Q96LS8 159 aa6.76□□□□□ -1.33
HMGB3-201ENST00000325307 DNAH7Q8WXX0 4024 aa6.76□□□□□ -1.33
HMGB3-201ENST00000325307 IGKV2D-24A0A075B6R9 120 aa6.75□□□□□ -1.33
HMGB3-201ENST00000325307 TMEM258P61165 79 aa6.75□□□□□ -1.33
HMGB3-201ENST00000325307 CASC10Q5T4H9 136 aa6.75□□□□□ -1.33
HMGB3-201ENST00000325307 LITAFQ99732 161 aa6.75□□□□□ -1.33
HMGB3-201ENST00000325307 TRAV8-4A0A0B4J246 113 aa6.75□□□□□ -1.33
HMGB3-201ENST00000325307 LOC107984156A0A0G2JMH3 177 aa6.75□□□□□ -1.33
HMGB3-201ENST00000325307 CD164L2Q6UWJ8 174 aa6.75□□□□□ -1.33
HMGB3-201ENST00000325307 ARL17AQ8IVW1 177 aa6.75□□□□□ -1.33
HMGB3-201ENST00000325307 LGALS3P17931 250 aaKnown RBP6.75□□□□□ -1.33
HMGB3-201ENST00000325307 IGHV3OR16-9A0A0B4J2B5 98 aa6.74□□□□□ -1.33
HMGB3-201ENST00000325307 A0A0B4J2C4 111 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms