RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 IGIPA6NJ69 53 aa11.27□□□□□ -0.61
HCFC1-201ENST00000310441 FSHBP01225 129 aa11.27□□□□□ -0.61
HCFC1-201ENST00000310441 ZNF295-AS1Q8N0V1 137 aa11.26□□□□□ -0.61
HCFC1-201ENST00000310441 A0A1B0GW54 56 aa11.26□□□□□ -0.61
HCFC1-201ENST00000310441 PSPHP1O15172 72 aa11.26□□□□□ -0.61
HCFC1-201ENST00000310441 X6R8D5 127 aa11.25□□□□□ -0.61
HCFC1-201ENST00000310441 A8MZ25 164 aa11.25□□□□□ -0.61
HCFC1-201ENST00000310441 PROK1P58294 105 aa11.25□□□□□ -0.61
HCFC1-201ENST00000310441 BRWD1-AS2P59051 145 aa11.25□□□□□ -0.61
HCFC1-201ENST00000310441 TRBV10-3A0A0K0K1G6 114 aa11.25□□□□□ -0.61
HCFC1-201ENST00000310441 IGLV1-40P01703 118 aa11.25□□□□□ -0.61
HCFC1-201ENST00000310441 POM121L12Q8N7R1 296 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 INAFM1C9JVW0 142 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 Q6ZS46 218 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 Q9BRP9 147 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 ZNF702PQ9H963 129 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 SOSTDC1Q6X4U4 206 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 C2orf48Q96LS8 159 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 A0A1B0GUV1 79 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 LINC00575Q6W349 94 aa11.24□□□□□ -0.61
HCFC1-201ENST00000310441 Q8N6K4 173 aa11.23□□□□□ -0.61
HCFC1-201ENST00000310441 TMEM254Q8TBM7 123 aa11.23□□□□□ -0.61
HCFC1-201ENST00000310441 IGLV5-52A0A0A0MRZ9 124 aa11.23□□□□□ -0.61
HCFC1-201ENST00000310441 MSMPQ1L6U9 139 aa11.23□□□□□ -0.61
HCFC1-201ENST00000310441 LY6G6CO95867 125 aa11.23□□□□□ -0.61
HCFC1-201ENST00000310441 IGLV2-18A0A075B6J9 118 aa11.23□□□□□ -0.61
HCFC1-201ENST00000310441 C11orf71Q6IPW1 123 aa11.22□□□□□ -0.61
HCFC1-201ENST00000310441 LINC00482Q8N8I6 264 aa11.22□□□□□ -0.61
HCFC1-201ENST00000310441 SMIM1B2RUZ4 78 aa11.22□□□□□ -0.61
HCFC1-201ENST00000310441 LINC00242Q5T6M2 205 aa11.21□□□□□ -0.62
HCFC1-201ENST00000310441 CHD8Q9HCK8 2581 aa11.21□□□□□ -0.62
HCFC1-201ENST00000310441 Q8N2B8 174 aa11.2□□□□□ -0.62
HCFC1-201ENST00000310441 POLQO75417 2590 aa11.2□□□□□ -0.62
HCFC1-201ENST00000310441 CRYGAP11844 174 aa11.19□□□□□ -0.62
HCFC1-201ENST00000310441 SPAG11AQ6PDA7 123 aa11.19□□□□□ -0.62
HCFC1-201ENST00000310441 A0A087WYN8 130 aa11.18□□□□□ -0.62
HCFC1-201ENST00000310441 USP24Q9UPU5 2620 aa11.18□□□□□ -0.62
HCFC1-201ENST00000310441 ACYP2P14621 99 aa11.18□□□□□ -0.62
HCFC1-201ENST00000310441 M0R2N4 97 aa11.17□□□□□ -0.62
HCFC1-201ENST00000310441 AMELXQ99217 191 aa11.17□□□□□ -0.62
HCFC1-201ENST00000310441 UNQ6190/PRO20217Q6UXQ8 127 aa11.16□□□□□ -0.62
HCFC1-201ENST00000310441 LINC01006Q8NI28 216 aa11.16□□□□□ -0.62
HCFC1-201ENST00000310441 PRR9Q5T870 116 aa11.16□□□□□ -0.62
HCFC1-201ENST00000310441 A0A1B0GU69 56 aa11.15□□□□□ -0.62
HCFC1-201ENST00000310441 BCE1O60756 84 aa11.15□□□□□ -0.62
HCFC1-201ENST00000310441 C7orf65Q6ZTY9 151 aa11.14□□□□□ -0.63
HCFC1-201ENST00000310441 ZNF580Q9UK33 172 aa11.14□□□□□ -0.63
HCFC1-201ENST00000310441 C1orf64Q8NEQ6 169 aa11.14□□□□□ -0.63
HCFC1-201ENST00000310441 LY6G6DO95868 133 aa11.14□□□□□ -0.63
HCFC1-201ENST00000310441 Q6ZPA2 131 aa11.14□□□□□ -0.63
HCFC1-201ENST00000310441 C6orf223Q8N319 242 aa11.13□□□□□ -0.63
HCFC1-201ENST00000310441 BRI3O95415 125 aa11.13□□□□□ -0.63
HCFC1-201ENST00000310441 H3BPC8 53 aa11.13□□□□□ -0.63
HCFC1-201ENST00000310441 Q6ZTC4 211 aa11.12□□□□□ -0.63
HCFC1-201ENST00000310441 BEAN1Q3B7T3 259 aa11.12□□□□□ -0.63
HCFC1-201ENST00000310441 SBSPONQ8IVN8 264 aa11.12□□□□□ -0.63
HCFC1-201ENST00000310441 COX8CQ7Z4L0 72 aa11.12□□□□□ -0.63
HCFC1-201ENST00000310441 A0A1W2PNU3 283 aaPredicted RBP11.11□□□□□ -0.63
HCFC1-201ENST00000310441 LINC01556Q5JQF7 62 aa11.11□□□□□ -0.63
HCFC1-201ENST00000310441 C1orf229Q6ZS94 237 aaPredicted RBP11.11□□□□□ -0.63
HCFC1-201ENST00000310441 PLA2G2AP14555 144 aa11.11□□□□□ -0.63
HCFC1-201ENST00000310441 A0A087WSZ3 146 aa11.11□□□□□ -0.63
HCFC1-201ENST00000310441 SPINK1P00995 79 aa11.1□□□□□ -0.63
HCFC1-201ENST00000310441 PCOTHQ58A44 107 aa11.1□□□□□ -0.63
HCFC1-201ENST00000310441 C11orf21Q9P2W6 132 aa11.1□□□□□ -0.63
HCFC1-201ENST00000310441 RPS28P62857 69 aaKnown RBP11.09□□□□□ -0.63
HCFC1-201ENST00000310441 PLA2G5P39877 138 aa11.08□□□□□ -0.64
HCFC1-201ENST00000310441 C9orf116Q5BN46 136 aaPredicted RBP11.08□□□□□ -0.64
HCFC1-201ENST00000310441 LINC00337Q8N6G1 96 aa11.08□□□□□ -0.64
HCFC1-201ENST00000310441 C8orf87E5RJ46 101 aa11.08□□□□□ -0.64
HCFC1-201ENST00000310441 COX6A2Q02221 97 aa11.07□□□□□ -0.64
HCFC1-201ENST00000310441 IGLV1-51P01701 117 aa11.07□□□□□ -0.64
HCFC1-201ENST00000310441 CRIP3Q6Q6R5 217 aa11.07□□□□□ -0.64
HCFC1-201ENST00000310441 A0A087WVE0 104 aa11.06□□□□□ -0.64
HCFC1-201ENST00000310441 C19orf84I3L1E1 186 aa11.06□□□□□ -0.64
HCFC1-201ENST00000310441 CRIP2P52943 208 aaPredicted RBP11.06□□□□□ -0.64
HCFC1-201ENST00000310441 ADAMTSL4-AS1Q5T5F5 129 aa11.05□□□□□ -0.64
HCFC1-201ENST00000310441 C6orf48Q9UBA6 75 aa11.04□□□□□ -0.64
HCFC1-201ENST00000310441 FHL2Q14192 279 aa11.04□□□□□ -0.64
HCFC1-201ENST00000310441 C10orf99Q6UWK7 81 aa11.04□□□□□ -0.64
HCFC1-201ENST00000310441 NHLRC4P0CG21 123 aaPredicted RBP11.03□□□□□ -0.64
HCFC1-201ENST00000310441 IGKV2D-30A0A075B6S6 120 aa11.03□□□□□ -0.64
HCFC1-201ENST00000310441 IGKV2-30P06310 120 aa11.03□□□□□ -0.64
HCFC1-201ENST00000310441 C1orf134Q5TEV5 83 aa11.03□□□□□ -0.64
HCFC1-201ENST00000310441 PRR3P79522 188 aaKnown RBP11.02□□□□□ -0.65
HCFC1-201ENST00000310441 PRLHP81277 87 aa11.01□□□□□ -0.65
HCFC1-201ENST00000310441 SPINT4Q6UDR6 99 aa11.01□□□□□ -0.65
HCFC1-201ENST00000310441 ODF3L2Q3SX64 289 aa11□□□□□ -0.65
HCFC1-201ENST00000310441 LINC00846Q9NV44 126 aa11□□□□□ -0.65
HCFC1-201ENST00000310441 PRRC2CQ9Y520 2896 aaKnown RBP10.99□□□□□ -0.65
HCFC1-201ENST00000310441 GAS8-AS1O95177 125 aa10.99□□□□□ -0.65
HCFC1-201ENST00000310441 TSPEAR-AS2P59090 65 aa10.99□□□□□ -0.65
HCFC1-201ENST00000310441 RETNLBQ9BQ08 111 aa10.99□□□□□ -0.65
HCFC1-201ENST00000310441 CEP295Q9C0D2 2601 aa10.99□□□□□ -0.65
HCFC1-201ENST00000310441 C18orf65Q6ZTR6 163 aa10.98□□□□□ -0.65
HCFC1-201ENST00000310441 C16orf95Q9H693 158 aa10.98□□□□□ -0.65
HCFC1-201ENST00000310441 IGLV4-60A0A075B6I1 120 aa10.98□□□□□ -0.65
HCFC1-201ENST00000310441 FASNP49327 2511 aaKnown RBP10.98□□□□□ -0.65
HCFC1-201ENST00000310441 TRAV22A0A0B4J277 110 aa10.98□□□□□ -0.65
HCFC1-201ENST00000310441 BPTFQ12830 3046 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms