RNA–Protein interactions for RNA: ENST00000293880.9

SSRP1-202, Transcript of structure specific recognition protein 1, humanhuman

TSL 2

Gene SSRP1, Length 6,296 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-202ENST00000293880 SMIM1B2RUZ4 78 aa11.61□□□□□ -0.55
SSRP1-202ENST00000293880 ANKHD1Q8IWZ3 2542 aaKnown RBP11.6□□□□□ -0.55
SSRP1-202ENST00000293880 HIVEP3Q5T1R4 2406 aa11.6□□□□□ -0.55
SSRP1-202ENST00000293880 PRLHP81277 87 aa11.6□□□□□ -0.55
SSRP1-202ENST00000293880 CDSNQ15517 529 aa11.6□□□□□ -0.55
SSRP1-202ENST00000293880 Q6ZSN1 163 aa11.6□□□□□ -0.55
SSRP1-202ENST00000293880 WNK1Q9H4A3 2382 aa11.6□□□□□ -0.55
SSRP1-202ENST00000293880 IGLV1-40P01703 118 aa11.59□□□□□ -0.55
SSRP1-202ENST00000293880 IGF2RP11717 2491 aa11.58□□□□□ -0.56
SSRP1-202ENST00000293880 ATG2AQ2TAZ0 1938 aa11.58□□□□□ -0.56
SSRP1-202ENST00000293880 MRGPRG-AS1Q2M3A8 158 aa11.57□□□□□ -0.56
SSRP1-202ENST00000293880 DSCAMO60469 2012 aa11.57□□□□□ -0.56
SSRP1-202ENST00000293880 Q9BRP9 147 aa11.57□□□□□ -0.56
SSRP1-202ENST00000293880 IGLV8-61A0A075B6I0 122 aa11.57□□□□□ -0.56
SSRP1-202ENST00000293880 CEP192Q8TEP8 1941 aa11.56□□□□□ -0.56
SSRP1-202ENST00000293880 LINC00846Q9NV44 126 aa11.56□□□□□ -0.56
SSRP1-202ENST00000293880 MED12LQ86YW9 2145 aa11.56□□□□□ -0.56
SSRP1-202ENST00000293880 LINC01556Q5JQF7 62 aa11.56□□□□□ -0.56
SSRP1-202ENST00000293880 AVPP01185 164 aa11.55□□□□□ -0.56
SSRP1-202ENST00000293880 CCDC168Q8NDH2 2452 aa11.54□□□□□ -0.56
SSRP1-202ENST00000293880 PCNX3Q9H6A9 2034 aa11.54□□□□□ -0.56
SSRP1-202ENST00000293880 HCG22E2RYF7 251 aa11.53□□□□□ -0.56
SSRP1-202ENST00000293880 IGLV5-52A0A0A0MRZ9 124 aa11.52□□□□□ -0.56
SSRP1-202ENST00000293880 RPL28P46779 137 aaKnown RBP11.52□□□□□ -0.56
SSRP1-202ENST00000293880 CDIP1Q9H305 208 aa11.52□□□□□ -0.56
SSRP1-202ENST00000293880 RAI1Q7Z5J4 1906 aaPredicted RBP11.52□□□□□ -0.56
SSRP1-202ENST00000293880 ARHGAP32A7KAX9 2087 aa11.52□□□□□ -0.57
SSRP1-202ENST00000293880 PIEZO2Q9H5I5 2752 aa11.51□□□□□ -0.57
SSRP1-202ENST00000293880 A0A1B0GU69 56 aa11.51□□□□□ -0.57
SSRP1-202ENST00000293880 A0A087WSZ3 146 aa11.51□□□□□ -0.57
SSRP1-202ENST00000293880 LINC00474Q9P2X8 69 aa11.51□□□□□ -0.57
SSRP1-202ENST00000293880 SMIM29Q86T20 159 aa11.5□□□□□ -0.57
SSRP1-202ENST00000293880 PLXNB1O43157 2135 aa11.5□□□□□ -0.57
SSRP1-202ENST00000293880 FSTL3O95633 263 aa11.5□□□□□ -0.57
SSRP1-202ENST00000293880 FHL2Q14192 279 aa11.5□□□□□ -0.57
SSRP1-202ENST00000293880 MDFIQ99750 246 aa11.5□□□□□ -0.57
SSRP1-202ENST00000293880 HCFC1P51610 2035 aa11.5□□□□□ -0.57
SSRP1-202ENST00000293880 KRTAP10-9P60411 292 aa11.49□□□□□ -0.57
SSRP1-202ENST00000293880 ODF3L2Q3SX64 289 aa11.49□□□□□ -0.57
SSRP1-202ENST00000293880 C1orf64Q8NEQ6 169 aa11.49□□□□□ -0.57
SSRP1-202ENST00000293880 Q6ZTC4 211 aa11.49□□□□□ -0.57
SSRP1-202ENST00000293880 PRR14LQ5THK1 2151 aa11.48□□□□□ -0.57
SSRP1-202ENST00000293880 PRRC2AP48634 2157 aaKnown RBP11.48□□□□□ -0.57
SSRP1-202ENST00000293880 NUPR2A6NF83 97 aa11.47□□□□□ -0.57
SSRP1-202ENST00000293880 FSHBP01225 129 aa11.47□□□□□ -0.57
SSRP1-202ENST00000293880 CNFNQ9BYD5 112 aa11.47□□□□□ -0.57
SSRP1-202ENST00000293880 ABCA2Q9BZC7 2435 aa11.47□□□□□ -0.57
SSRP1-202ENST00000293880 C7orf65Q6ZTY9 151 aa11.46□□□□□ -0.58
SSRP1-202ENST00000293880 IGKV2D-30A0A075B6S6 120 aa11.46□□□□□ -0.58
SSRP1-202ENST00000293880 IGKV2-30P06310 120 aa11.46□□□□□ -0.58
SSRP1-202ENST00000293880 NAV2Q8IVL1 2488 aa11.45□□□□□ -0.58
SSRP1-202ENST00000293880 EGFEM1PQ0D2K5 195 aa11.45□□□□□ -0.58
SSRP1-202ENST00000293880 LIMD2Q9BT23 127 aa11.45□□□□□ -0.58
SSRP1-202ENST00000293880 SORL1Q92673 2214 aa11.45□□□□□ -0.58
SSRP1-202ENST00000293880 A0A096LNJ9 63 aa11.45□□□□□ -0.58
SSRP1-202ENST00000293880 EML5Q05BV3 1969 aa11.44□□□□□ -0.58
SSRP1-202ENST00000293880 MYO18BQ8IUG5 2567 aa11.43□□□□□ -0.58
SSRP1-202ENST00000293880 ATP11AUNQ6ZP68 121 aa11.42□□□□□ -0.58
SSRP1-202ENST00000293880 AMELXQ99217 191 aa11.42□□□□□ -0.58
SSRP1-202ENST00000293880 SSBP3-AS1Q7Z2R9 100 aa11.4□□□□□ -0.58
SSRP1-202ENST00000293880 Q6ZRU5 148 aa11.4□□□□□ -0.58
SSRP1-202ENST00000293880 C8orf87E5RJ46 101 aa11.39□□□□□ -0.59
SSRP1-202ENST00000293880 hDV103S1A0JD37 113 aa11.39□□□□□ -0.59
SSRP1-202ENST00000293880 CXCL6P80162 114 aa11.39□□□□□ -0.59
SSRP1-202ENST00000293880 GOLGB1Q14789 3259 aaKnown RBP11.39□□□□□ -0.59
SSRP1-202ENST00000293880 LINC00337Q8N6G1 96 aa11.37□□□□□ -0.59
SSRP1-202ENST00000293880 MUC22E2RYF6 1773 aaPredicted RBP11.37□□□□□ -0.59
SSRP1-202ENST00000293880 LYPD5Q6UWN5 251 aa11.36□□□□□ -0.59
SSRP1-202ENST00000293880 CPAMD8Q8IZJ3 1885 aa11.36□□□□□ -0.59
SSRP1-202ENST00000293880 KIAA0087Q14695 138 aa11.35□□□□□ -0.59
SSRP1-202ENST00000293880 MUC7Q8TAX7 377 aa11.35□□□□□ -0.59
SSRP1-202ENST00000293880 COL5A1P20908 1838 aaPredicted RBP11.35□□□□□ -0.59
SSRP1-202ENST00000293880 MUC4Q99102 2169 aa11.35□□□□□ -0.59
SSRP1-202ENST00000293880 EXPH5Q8NEV8 1989 aa11.34□□□□□ -0.59
SSRP1-202ENST00000293880 PTPRSQ13332 1948 aa11.34□□□□□ -0.59
SSRP1-202ENST00000293880 C2orf48Q96LS8 159 aa11.34□□□□□ -0.59
SSRP1-202ENST00000293880 SMCR5Q8TEV8 140 aa11.32□□□□□ -0.6
SSRP1-202ENST00000293880 IGLV1-51P01701 117 aa11.32□□□□□ -0.6
SSRP1-202ENST00000293880 C22orf24Q9Y442 160 aa11.31□□□□□ -0.6
SSRP1-202ENST00000293880 NAV3Q8IVL0 2385 aa11.3□□□□□ -0.6
SSRP1-202ENST00000293880 LINC01561Q8N1V8 128 aa11.3□□□□□ -0.6
SSRP1-202ENST00000293880 SPATA3Q8NHX4 192 aa11.29□□□□□ -0.6
SSRP1-202ENST00000293880 SMCPP49901 116 aaPredicted RBP11.29□□□□□ -0.6
SSRP1-202ENST00000293880 WDR87Q6ZQQ6 2873 aa11.28□□□□□ -0.6
SSRP1-202ENST00000293880 FAM19A4Q96LR4 140 aa11.28□□□□□ -0.6
SSRP1-202ENST00000293880 FAM218AQ96MZ4 157 aa11.27□□□□□ -0.6
SSRP1-202ENST00000293880 C6orf48Q9UBA6 75 aa11.27□□□□□ -0.6
SSRP1-202ENST00000293880 Q8N2B8 174 aa11.27□□□□□ -0.61
SSRP1-202ENST00000293880 TM2D3Q9BRN9 247 aa11.26□□□□□ -0.61
SSRP1-202ENST00000293880 C1orf134Q5TEV5 83 aa11.26□□□□□ -0.61
SSRP1-202ENST00000293880 A8MUN3 132 aa11.26□□□□□ -0.61
SSRP1-202ENST00000293880 SPACA4Q8TDM5 124 aa11.26□□□□□ -0.61
SSRP1-202ENST00000293880 ACYP2P14621 99 aa11.25□□□□□ -0.61
SSRP1-202ENST00000293880 RPL37AP61513 92 aaKnown RBP11.25□□□□□ -0.61
SSRP1-202ENST00000293880 CHTF8P0CG12 524 aa11.24□□□□□ -0.61
SSRP1-202ENST00000293880 MOBPQ13875 183 aa11.24□□□□□ -0.61
SSRP1-202ENST00000293880 LRP4O75096 1905 aa11.23□□□□□ -0.61
SSRP1-202ENST00000293880 ADAMTS20P59510 1910 aa11.22□□□□□ -0.61
SSRP1-202ENST00000293880 A0A1W2PPR1 153 aa11.22□□□□□ -0.61
SSRP1-202ENST00000293880 RPS28P62857 69 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms