RNA–Protein interactions for RNA: ENST00000285199.11

USP43-201, Transcript of ubiquitin specific peptidase 43, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP43, Length 4,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-201ENST00000285199 FAM218AQ96MZ4 157 aa11.27□□□□□ -0.61
USP43-201ENST00000285199 NBEAL2Q6ZNJ1 2754 aa11.27□□□□□ -0.61
USP43-201ENST00000285199 DEFB113Q30KQ7 82 aa11.27□□□□□ -0.61
USP43-201ENST00000285199 C5orf47Q569G3 176 aa11.27□□□□□ -0.61
USP43-201ENST00000285199 SOSTDC1Q6X4U4 206 aa11.27□□□□□ -0.61
USP43-201ENST00000285199 FAM236DA0A1B0GTK5 79 aa11.26□□□□□ -0.61
USP43-201ENST00000285199 FAM236CP0DP71 79 aa11.26□□□□□ -0.61
USP43-201ENST00000285199 Q6YL49 198 aa11.26□□□□□ -0.61
USP43-201ENST00000285199 F8WEM9 126 aa11.26□□□□□ -0.61
USP43-201ENST00000285199 NHLRC4P0CG21 123 aaPredicted RBP11.26□□□□□ -0.61
USP43-201ENST00000285199 DMXL1Q9Y485 3027 aa11.25□□□□□ -0.61
USP43-201ENST00000285199 DIRC1Q969H9 104 aa11.25□□□□□ -0.61
USP43-201ENST00000285199 FAM110AQ9BQ89 295 aa11.25□□□□□ -0.61
USP43-201ENST00000285199 LINC00959A0A1B0GUT2 108 aa11.25□□□□□ -0.61
USP43-201ENST00000285199 DNAJC9-AS1A6NH13 148 aa11.25□□□□□ -0.61
USP43-201ENST00000285199 C3orf84H3BNL1 204 aa11.24□□□□□ -0.61
USP43-201ENST00000285199 C1orf158Q8N1D5 194 aa11.24□□□□□ -0.61
USP43-201ENST00000285199 MGAM2Q2M2H8 2515 aa11.24□□□□□ -0.61
USP43-201ENST00000285199 PRR4Q16378 134 aa11.24□□□□□ -0.61
USP43-201ENST00000285199 DEFB121Q5J5C9 76 aa11.23□□□□□ -0.61
USP43-201ENST00000285199 SBSPONQ8IVN8 264 aa11.23□□□□□ -0.61
USP43-201ENST00000285199 ZNF575Q86XF7 245 aa11.22□□□□□ -0.61
USP43-201ENST00000285199 GCN1Q92616 2671 aaKnown RBP11.22□□□□□ -0.61
USP43-201ENST00000285199 SMIM9A6NGZ8 99 aa11.22□□□□□ -0.61
USP43-201ENST00000285199 UBE2BP63146 152 aa11.22□□□□□ -0.61
USP43-201ENST00000285199 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.22□□□□□ -0.61
USP43-201ENST00000285199 FLNAP21333 2647 aaKnown RBP11.22□□□□□ -0.61
USP43-201ENST00000285199 TMEM258P61165 79 aa11.22□□□□□ -0.61
USP43-201ENST00000285199 IGHV4-31P0DP07 118 aa11.21□□□□□ -0.61
USP43-201ENST00000285199 KIR2DL5BQ8NHK3 375 aa11.21□□□□□ -0.61
USP43-201ENST00000285199 ITPR1Q14643 2758 aa11.21□□□□□ -0.62
USP43-201ENST00000285199 RPL28P46779 137 aaKnown RBP11.2□□□□□ -0.62
USP43-201ENST00000285199 LRCOL1A6NCL2 159 aa11.2□□□□□ -0.62
USP43-201ENST00000285199 COL27A1Q8IZC6 1860 aaPredicted RBP11.2□□□□□ -0.62
USP43-201ENST00000285199 SVIPQ8NHG7 77 aa11.2□□□□□ -0.62
USP43-201ENST00000285199 TRBV6-4A0A1B0GX49 114 aa11.19□□□□□ -0.62
USP43-201ENST00000285199 UNQ6190/PRO20217Q6UXQ8 127 aa11.19□□□□□ -0.62
USP43-201ENST00000285199 NTM-AS1Q6ZSK4 140 aa11.19□□□□□ -0.62
USP43-201ENST00000285199 COX7BP24311 80 aa11.18□□□□□ -0.62
USP43-201ENST00000285199 FAM19A4Q96LR4 140 aa11.18□□□□□ -0.62
USP43-201ENST00000285199 APOC4P55056 127 aa11.18□□□□□ -0.62
USP43-201ENST00000285199 ZFHX4Q86UP3 3567 aa11.18□□□□□ -0.62
USP43-201ENST00000285199 FUSP35637 526 aaKnown RBP eCLIP11.18□□□□□ -0.62
USP43-201ENST00000285199 KRTAP10-9P60411 292 aa11.17□□□□□ -0.62
USP43-201ENST00000285199 ETDCA0A1B0GVM5 59 aa11.17□□□□□ -0.62
USP43-201ENST00000285199 PSCAO43653 123 aa11.17□□□□□ -0.62
USP43-201ENST00000285199 CCKP06307 115 aa11.17□□□□□ -0.62
USP43-201ENST00000285199 SPART-AS1P0CW21 52 aa11.17□□□□□ -0.62
USP43-201ENST00000285199 TRBV7-7A0A0K0K1E9 115 aa11.17□□□□□ -0.62
USP43-201ENST00000285199 LITAFQ99732 161 aa11.17□□□□□ -0.62
USP43-201ENST00000285199 CFAP46Q8IYW2 2715 aa11.16□□□□□ -0.62
USP43-201ENST00000285199 BPY2O14599 106 aa11.16□□□□□ -0.62
USP43-201ENST00000285199 IGKV2-28A0A075B6P5 120 aa11.16□□□□□ -0.62
USP43-201ENST00000285199 IGKV2D-28P01615 120 aa11.16□□□□□ -0.62
USP43-201ENST00000285199 Q6JHZ5 121 aa11.16□□□□□ -0.62
USP43-201ENST00000285199 ITPR3Q14573 2671 aa11.15□□□□□ -0.62
USP43-201ENST00000285199 A0A096LNI7 61 aa11.15□□□□□ -0.62
USP43-201ENST00000285199 SMCR5Q8TEV8 140 aa11.15□□□□□ -0.62
USP43-201ENST00000285199 CSDC2Q9Y534 153 aaKnown RBP11.15□□□□□ -0.62
USP43-201ENST00000285199 MAST4O15021 2626 aa11.14□□□□□ -0.63
USP43-201ENST00000285199 CELA1Q9UNI1 258 aa11.14□□□□□ -0.63
USP43-201ENST00000285199 C6orf223Q8N319 242 aa11.13□□□□□ -0.63
USP43-201ENST00000285199 Q8N814 137 aa11.13□□□□□ -0.63
USP43-201ENST00000285199 ZNF843Q8N446 348 aa11.12□□□□□ -0.63
USP43-201ENST00000285199 C11orf72Q8NBR9 251 aa11.11□□□□□ -0.63
USP43-201ENST00000285199 A0A087WZ39 114 aa11.11□□□□□ -0.63
USP43-201ENST00000285199 CYSRT1A8MQ03 144 aa11.11□□□□□ -0.63
USP43-201ENST00000285199 IGLV5-39A0A0G2JS06 123 aa11.1□□□□□ -0.63
USP43-201ENST00000285199 LINC01006Q8NI28 216 aa11.1□□□□□ -0.63
USP43-201ENST00000285199 Q8N9L7 120 aa11.1□□□□□ -0.63
USP43-201ENST00000285199 MUC3AQ02505 3323 aa11.1□□□□□ -0.63
USP43-201ENST00000285199 CD164L2Q6UWJ8 174 aa11.09□□□□□ -0.63
USP43-201ENST00000285199 RMI2Q96E14 147 aa11.09□□□□□ -0.63
USP43-201ENST00000285199 NDUFC2O95298 119 aa11.09□□□□□ -0.63
USP43-201ENST00000285199 C4orf26Q17RF5 130 aa11.09□□□□□ -0.63
USP43-201ENST00000285199 BEAN1Q3B7T3 259 aa11.08□□□□□ -0.64
USP43-201ENST00000285199 Q8N3U1 123 aa11.08□□□□□ -0.64
USP43-201ENST00000285199 ATP5EP2Q5VTU8 51 aa11.07□□□□□ -0.64
USP43-201ENST00000285199 IGKV2-24A0A0C4DH68 120 aa11.07□□□□□ -0.64
USP43-201ENST00000285199 UBE2DNLQ8IWF7 75 aa11.07□□□□□ -0.64
USP43-201ENST00000285199 UNC79Q9P2D8 2635 aa11.07□□□□□ -0.64
USP43-201ENST00000285199 TRBV10-3A0A0K0K1G6 114 aa11.06□□□□□ -0.64
USP43-201ENST00000285199 FLNCQ14315 2725 aa11.06□□□□□ -0.64
USP43-201ENST00000285199 FHL2Q14192 279 aa11.06□□□□□ -0.64
USP43-201ENST00000285199 Q8IZM0 81 aa11.05□□□□□ -0.64
USP43-201ENST00000285199 IGHV3OR16-9A0A0B4J2B5 98 aa11.04□□□□□ -0.64
USP43-201ENST00000285199 RPL37AP8A6NKH3 93 aa11.04□□□□□ -0.64
USP43-201ENST00000285199 PDE6GP18545 87 aa11.04□□□□□ -0.64
USP43-201ENST00000285199 NANOS2P60321 138 aaKnown RBP11.04□□□□□ -0.64
USP43-201ENST00000285199 HIGD2AQ9BW72 106 aa11.04□□□□□ -0.64
USP43-201ENST00000285199 NDUFS5O43920 106 aa11.03□□□□□ -0.64
USP43-201ENST00000285199 FAM30AQ9NZY2 134 aa11.02□□□□□ -0.64
USP43-201ENST00000285199 ZNF73O43830 326 aaPredicted RBP11.02□□□□□ -0.65
USP43-201ENST00000285199 C9orf66Q5T8R8 295 aa11.02□□□□□ -0.65
USP43-201ENST00000285199 PRORYQ9H606 182 aa11.02□□□□□ -0.65
USP43-201ENST00000285199 TNRC18O15417 2968 aaPredicted RBP11.02□□□□□ -0.65
USP43-201ENST00000285199 C9orf129Q5T035 196 aaKnown RBP11.01□□□□□ -0.65
USP43-201ENST00000285199 A0A0J9YWU9 116 aa11.01□□□□□ -0.65
USP43-201ENST00000285199 LAMA5O15230 3695 aa11□□□□□ -0.65
USP43-201ENST00000285199 NDUFC2-KCTD14E9PQ53 114 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms