RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 C6orf226Q5I0X4 101 aa12.48□□□□□ -0.41
PDLIM3-202ENST00000284770 PRSS2P07478 247 aa12.48□□□□□ -0.41
PDLIM3-202ENST00000284770 C1orf134Q5TEV5 83 aa12.48□□□□□ -0.41
PDLIM3-202ENST00000284770 USP17L23D6RBM5 183 aa12.47□□□□□ -0.41
PDLIM3-202ENST00000284770 SPAG11BQ08648 103 aa12.47□□□□□ -0.41
PDLIM3-202ENST00000284770 TAL2Q16559 108 aa12.47□□□□□ -0.41
PDLIM3-202ENST00000284770 BVES-AS1Q5T3Y7 98 aa12.47□□□□□ -0.41
PDLIM3-202ENST00000284770 LITAFQ99732 161 aa12.47□□□□□ -0.41
PDLIM3-202ENST00000284770 SPANXB1Q9NS25 103 aaPredicted RBP12.47□□□□□ -0.41
PDLIM3-202ENST00000284770 DNAH10Q8IVF4 4471 aa12.46□□□□□ -0.42
PDLIM3-202ENST00000284770 GVQW2A0A096LPI5 108 aaPredicted RBP12.46□□□□□ -0.42
PDLIM3-202ENST00000284770 ZNF561-AS1K7EIQ3 104 aa12.46□□□□□ -0.42
PDLIM3-202ENST00000284770 HERV-K104P63124 156 aa12.46□□□□□ -0.42
PDLIM3-202ENST00000284770 HIGD2BQ4VC39 106 aa12.46□□□□□ -0.42
PDLIM3-202ENST00000284770 DNAH6Q9C0G6 4158 aa12.45□□□□□ -0.42
PDLIM3-202ENST00000284770 HIST1H4GQ99525 98 aa12.45□□□□□ -0.42
PDLIM3-202ENST00000284770 LECT2O14960 151 aa12.44□□□□□ -0.42
PDLIM3-202ENST00000284770 BATFQ16520 125 aa12.44□□□□□ -0.42
PDLIM3-202ENST00000284770 LINC00526Q96FQ7 95 aa12.44□□□□□ -0.42
PDLIM3-202ENST00000284770 TIMM17BO60830 172 aa12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 CKS1BP61024 79 aa12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 CEND1Q8N111 149 aa12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 TMEM238C9JI98 176 aa12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 CXCL5P42830 114 aa12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 ADAMTSL4-AS1Q5T5F5 129 aa12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 SFTA2Q6UW10 78 aa12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 C2orf82Q6UX34 121 aa12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 NTN5Q8WTR8 489 aaPredicted RBP12.43□□□□□ -0.42
PDLIM3-202ENST00000284770 LRCOL1A6NCL2 159 aa12.42□□□□□ -0.42
PDLIM3-202ENST00000284770 SRSF9Q13242 221 aaKnown RBP eCLIP12.42□□□□□ -0.42
PDLIM3-202ENST00000284770 WFDC2Q14508 124 aa12.42□□□□□ -0.42
PDLIM3-202ENST00000284770 GCSHP23434 173 aa12.41□□□□□ -0.42
PDLIM3-202ENST00000284770 C2orf48Q96LS8 159 aa12.41□□□□□ -0.42
PDLIM3-202ENST00000284770 FXYD2P54710 66 aa12.41□□□□□ -0.42
PDLIM3-202ENST00000284770 SPANXDQ9BXN6 97 aa12.41□□□□□ -0.42
PDLIM3-202ENST00000284770 SPANXCQ9NY87 97 aa12.41□□□□□ -0.42
PDLIM3-202ENST00000284770 F8WDY8 70 aa12.39□□□□□ -0.43
PDLIM3-202ENST00000284770 C14orf177Q52M58 125 aa12.39□□□□□ -0.43
PDLIM3-202ENST00000284770 CIRBPQ14011 172 aaKnown RBP12.38□□□□□ -0.43
PDLIM3-202ENST00000284770 MEIG1Q5JSS6 88 aa12.38□□□□□ -0.43
PDLIM3-202ENST00000284770 CAMK2N2Q96S95 79 aa12.38□□□□□ -0.43
PDLIM3-202ENST00000284770 DNAH2Q9P225 4427 aa12.38□□□□□ -0.43
PDLIM3-202ENST00000284770 UNQ6190/PRO20217Q6UXQ8 127 aa12.38□□□□□ -0.43
PDLIM3-202ENST00000284770 SACSQ9NZJ4 4579 aa12.37□□□□□ -0.43
PDLIM3-202ENST00000284770 SMIM13P0DJ93 91 aa12.37□□□□□ -0.43
PDLIM3-202ENST00000284770 LBHQ53QV2 105 aaPredicted RBP12.37□□□□□ -0.43
PDLIM3-202ENST00000284770 C10orf25Q5T742 122 aa12.37□□□□□ -0.43
PDLIM3-202ENST00000284770 Q6ZVH6 145 aa12.37□□□□□ -0.43
PDLIM3-202ENST00000284770 HYDINQ4G0P3 5121 aa12.36□□□□□ -0.43
PDLIM3-202ENST00000284770 DAND5Q8N907 189 aa12.36□□□□□ -0.43
PDLIM3-202ENST00000284770 A0A087WTM6 91 aa12.35□□□□□ -0.43
PDLIM3-202ENST00000284770 A0A0U1RRA0 63 aa12.35□□□□□ -0.43
PDLIM3-202ENST00000284770 RTL8CO15255 209 aa12.35□□□□□ -0.43
PDLIM3-202ENST00000284770 SLPIP03973 132 aa12.35□□□□□ -0.43
PDLIM3-202ENST00000284770 SYCNQ0VAF6 134 aa12.35□□□□□ -0.43
PDLIM3-202ENST00000284770 MUSTN1Q8IVN3 82 aa12.35□□□□□ -0.43
PDLIM3-202ENST00000284770 ERG28Q9UKR5 140 aa12.35□□□□□ -0.43
PDLIM3-202ENST00000284770 PTTG1IPP53801 180 aa12.34□□□□□ -0.43
PDLIM3-202ENST00000284770 COL5A1-AS1Q5SY13 56 aa12.34□□□□□ -0.43
PDLIM3-202ENST00000284770 Q6ZRU5 148 aa12.34□□□□□ -0.43
PDLIM3-202ENST00000284770 TRBV30A0A0K0K1B3 111 aa12.33□□□□□ -0.44
PDLIM3-202ENST00000284770 C6orf48Q9UBA6 75 aa12.33□□□□□ -0.44
PDLIM3-202ENST00000284770 EIF4EBP3O60516 100 aaPredicted RBP12.33□□□□□ -0.44
PDLIM3-202ENST00000284770 Q8N814 137 aa12.33□□□□□ -0.44
PDLIM3-202ENST00000284770 A6NDN8 102 aa12.32□□□□□ -0.44
PDLIM3-202ENST00000284770 IFITM1P13164 125 aa12.32□□□□□ -0.44
PDLIM3-202ENST00000284770 PFN2P35080 140 aa12.31□□□□□ -0.44
PDLIM3-202ENST00000284770 LINC00158P58513 81 aa12.31□□□□□ -0.44
PDLIM3-202ENST00000284770 CNBPP62633 177 aaKnown RBP12.31□□□□□ -0.44
PDLIM3-202ENST00000284770 C9orf116Q5BN46 136 aaPredicted RBP12.31□□□□□ -0.44
PDLIM3-202ENST00000284770 LINC00308Q8TCZ7 52 aa12.31□□□□□ -0.44
PDLIM3-202ENST00000284770 CARD19Q96LW7 228 aa12.31□□□□□ -0.44
PDLIM3-202ENST00000284770 NPC2P61916 151 aa12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 TNP2Q05952 138 aa12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 COX17Q14061 63 aa12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 MIR7-3HGQ8N6C7 128 aa12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 TMEM238LA0A1B0GVL6 79 aa12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 A6NJY4 79 aa12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 RPL24P83731 157 aaKnown RBP12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 SOSTDC1Q6X4U4 206 aa12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 NHP2Q9NX24 153 aaKnown RBP12.3□□□□□ -0.44
PDLIM3-202ENST00000284770 A0A1B0GWB2 263 aa12.29□□□□□ -0.44
PDLIM3-202ENST00000284770 A4D1N5 150 aa12.29□□□□□ -0.44
PDLIM3-202ENST00000284770 RNF151Q2KHN1 245 aa12.29□□□□□ -0.44
PDLIM3-202ENST00000284770 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.28□□□□□ -0.44
PDLIM3-202ENST00000284770 PPDPFQ9H3Y8 114 aa12.28□□□□□ -0.44
PDLIM3-202ENST00000284770 K7ERJ3 54 aa12.27□□□□□ -0.45
PDLIM3-202ENST00000284770 DNAH17Q9UFH2 4485 aa12.27□□□□□ -0.45
PDLIM3-202ENST00000284770 KMT2CQ8NEZ4 4911 aaKnown RBP12.26□□□□□ -0.45
PDLIM3-202ENST00000284770 TAX1BP3O14907 124 aa12.26□□□□□ -0.45
PDLIM3-202ENST00000284770 CFC1BP0CG36 223 aa12.25□□□□□ -0.45
PDLIM3-202ENST00000284770 CFC1P0CG37 223 aa12.25□□□□□ -0.45
PDLIM3-202ENST00000284770 COPS9Q8WXC6 57 aa12.25□□□□□ -0.45
PDLIM3-202ENST00000284770 NDUFC2-KCTD14E9PQ53 114 aa12.23□□□□□ -0.45
PDLIM3-202ENST00000284770 FRAS1Q86XX4 4008 aa12.23□□□□□ -0.45
PDLIM3-202ENST00000284770 LOC107984156A0A0G2JMH3 177 aa12.23□□□□□ -0.45
PDLIM3-202ENST00000284770 ARL17AQ8IVW1 177 aa12.23□□□□□ -0.45
PDLIM3-202ENST00000284770 TLX1NBP0CAT3 122 aa12.22□□□□□ -0.45
PDLIM3-202ENST00000284770 LINC00336Q6ZUF6 198 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms