RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 DNAH1Q9P2D7 4330 aa9.46□□□□□ -0.9
SS18-201ENST00000269137 TMEM238C9JI98 176 aa9.46□□□□□ -0.9
SS18-201ENST00000269137 K7EP34 96 aa9.46□□□□□ -0.9
SS18-201ENST00000269137 A0A1B0GWB2 263 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 APOMO95445 188 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 SRSF9Q13242 221 aaKnown RBP eCLIP9.45□□□□□ -0.9
SS18-201ENST00000269137 LITAFQ99732 161 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 C1orf43Q9BWL3 253 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 TGP01266 2768 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 FABP2P12104 132 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 KIAA0087Q14695 138 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 C6orf226Q5I0X4 101 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 UBE2DNLQ8IWF7 75 aa9.45□□□□□ -0.9
SS18-201ENST00000269137 PRSS2P07478 247 aa9.44□□□□□ -0.9
SS18-201ENST00000269137 LYSTQ99698 3801 aa9.44□□□□□ -0.9
SS18-201ENST00000269137 CIRBPQ14011 172 aaKnown RBP9.43□□□□□ -0.9
SS18-201ENST00000269137 SPCS1Q9Y6A9 102 aa9.43□□□□□ -0.9
SS18-201ENST00000269137 VPS13DQ5THJ4 4388 aa9.43□□□□□ -0.9
SS18-201ENST00000269137 TMEM238LA0A1B0GVL6 79 aa9.42□□□□□ -0.9
SS18-201ENST00000269137 A6NJY4 79 aa9.42□□□□□ -0.9
SS18-201ENST00000269137 SPANXDQ9BXN6 97 aa9.42□□□□□ -0.9
SS18-201ENST00000269137 SPANXCQ9NY87 97 aa9.42□□□□□ -0.9
SS18-201ENST00000269137 IGKV2D-24A0A075B6R9 120 aa9.42□□□□□ -0.9
SS18-201ENST00000269137 CXCL5P42830 114 aa9.42□□□□□ -0.9
SS18-201ENST00000269137 ADAMTSL4-AS1Q5T5F5 129 aa9.42□□□□□ -0.9
SS18-201ENST00000269137 CFAP161Q6P656 301 aa9.41□□□□□ -0.9
SS18-201ENST00000269137 MUC7Q8TAX7 377 aa9.4□□□□□ -0.9
SS18-201ENST00000269137 RMI2Q96E14 147 aa9.4□□□□□ -0.9
SS18-201ENST00000269137 Q9HAA7 133 aa9.4□□□□□ -0.9
SS18-201ENST00000269137 CKS1BP61024 79 aa9.4□□□□□ -0.91
SS18-201ENST00000269137 SPAG11BQ08648 103 aa9.39□□□□□ -0.91
SS18-201ENST00000269137 MEIG1Q5JSS6 88 aa9.39□□□□□ -0.91
SS18-201ENST00000269137 IFITM1P13164 125 aa9.38□□□□□ -0.91
SS18-201ENST00000269137 C2orf82Q6UX34 121 aa9.38□□□□□ -0.91
SS18-201ENST00000269137 MUSTN1Q8IVN3 82 aa9.38□□□□□ -0.91
SS18-201ENST00000269137 WWC2-AS2Q96NR7 200 aa9.38□□□□□ -0.91
SS18-201ENST00000269137 RPL24P83731 157 aaKnown RBP9.37□□□□□ -0.91
SS18-201ENST00000269137 C15orf56Q8N910 161 aa9.37□□□□□ -0.91
SS18-201ENST00000269137 KRTAP1-5Q9BYS1 174 aa9.37□□□□□ -0.91
SS18-201ENST00000269137 NTN5Q8WTR8 489 aaPredicted RBP9.36□□□□□ -0.91
SS18-201ENST00000269137 PPDPFQ9H3Y8 114 aa9.36□□□□□ -0.91
SS18-201ENST00000269137 ERG28Q9UKR5 140 aa9.36□□□□□ -0.91
SS18-201ENST00000269137 DAND5Q8N907 189 aa9.35□□□□□ -0.91
SS18-201ENST00000269137 COPS9Q8WXC6 57 aa9.35□□□□□ -0.91
SS18-201ENST00000269137 PGPEP1Q9NXJ5 209 aa9.35□□□□□ -0.91
SS18-201ENST00000269137 GVQW2A0A096LPI5 108 aaPredicted RBP9.35□□□□□ -0.91
SS18-201ENST00000269137 A0A0U1RRA0 63 aa9.35□□□□□ -0.91
SS18-201ENST00000269137 TTC32Q5I0X7 151 aa9.35□□□□□ -0.91
SS18-201ENST00000269137 C6orf223Q8N319 242 aa9.35□□□□□ -0.91
SS18-201ENST00000269137 LINC00308Q8TCZ7 52 aa9.35□□□□□ -0.91
SS18-201ENST00000269137 ZNF561-AS1K7EIQ3 104 aa9.34□□□□□ -0.91
SS18-201ENST00000269137 CFC1BP0CG36 223 aa9.34□□□□□ -0.91
SS18-201ENST00000269137 CFC1P0CG37 223 aa9.34□□□□□ -0.91
SS18-201ENST00000269137 LINC00158P58513 81 aa9.34□□□□□ -0.91
SS18-201ENST00000269137 COX17Q14061 63 aa9.34□□□□□ -0.91
SS18-201ENST00000269137 OCIAD2Q56VL3 154 aa9.34□□□□□ -0.91
SS18-201ENST00000269137 C2orf48Q96LS8 159 aa9.34□□□□□ -0.91
SS18-201ENST00000269137 NBDYA0A0U1RRE5 68 aa9.33□□□□□ -0.92
SS18-201ENST00000269137 A4D1N5 150 aa9.33□□□□□ -0.92
SS18-201ENST00000269137 F8WDY8 70 aa9.33□□□□□ -0.92
SS18-201ENST00000269137 UNQ6190/PRO20217Q6UXQ8 127 aa9.33□□□□□ -0.92
SS18-201ENST00000269137 MIR7-3HGQ8N6C7 128 aa9.33□□□□□ -0.92
SS18-201ENST00000269137 LINC00526Q96FQ7 95 aa9.33□□□□□ -0.92
SS18-201ENST00000269137 TSPAN13O95857 204 aa9.33□□□□□ -0.92
SS18-201ENST00000269137 C10orf25Q5T742 122 aa9.33□□□□□ -0.92
SS18-201ENST00000269137 EIF4EBP3O60516 100 aaPredicted RBP9.32□□□□□ -0.92
SS18-201ENST00000269137 PFN2P35080 140 aa9.32□□□□□ -0.92
SS18-201ENST00000269137 HIGD2BQ4VC39 106 aa9.32□□□□□ -0.92
SS18-201ENST00000269137 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.31□□□□□ -0.92
SS18-201ENST00000269137 CASC10Q5T4H9 136 aa9.31□□□□□ -0.92
SS18-201ENST00000269137 SOSTDC1Q6X4U4 206 aa9.31□□□□□ -0.92
SS18-201ENST00000269137 NPC2P61916 151 aa9.31□□□□□ -0.92
SS18-201ENST00000269137 TRBV30A0A0K0K1B3 111 aa9.3□□□□□ -0.92
SS18-201ENST00000269137 USP17L23D6RBM5 183 aa9.3□□□□□ -0.92
SS18-201ENST00000269137 CAMK2N2Q96S95 79 aa9.3□□□□□ -0.92
SS18-201ENST00000269137 PRO1854Q9UHT4 67 aa9.3□□□□□ -0.92
SS18-201ENST00000269137 DNAH10Q8IVF4 4471 aa9.29□□□□□ -0.92
SS18-201ENST00000269137 A0A0B4J2C4 111 aa9.29□□□□□ -0.92
SS18-201ENST00000269137 H3BMG7 143 aa9.29□□□□□ -0.92
SS18-201ENST00000269137 C9orf116Q5BN46 136 aaPredicted RBP9.29□□□□□ -0.92
SS18-201ENST00000269137 C6orf48Q9UBA6 75 aa9.29□□□□□ -0.92
SS18-201ENST00000269137 LOC107984156A0A0G2JMH3 177 aa9.28□□□□□ -0.92
SS18-201ENST00000269137 F8W1H4 67 aa9.28□□□□□ -0.92
SS18-201ENST00000269137 K7ERU9 68 aa9.28□□□□□ -0.92
SS18-201ENST00000269137 ARL17AQ8IVW1 177 aa9.28□□□□□ -0.92
SS18-201ENST00000269137 C3orf84H3BNL1 204 aa9.28□□□□□ -0.92
SS18-201ENST00000269137 DNAH6Q9C0G6 4158 aa9.27□□□□□ -0.93
SS18-201ENST00000269137 LYRM7Q5U5X0 104 aa9.27□□□□□ -0.93
SS18-201ENST00000269137 SYCNQ0VAF6 134 aa9.26□□□□□ -0.93
SS18-201ENST00000269137 Q6ZRU5 148 aa9.26□□□□□ -0.93
SS18-201ENST00000269137 CBY1Q9Y3M2 126 aa9.26□□□□□ -0.93
SS18-201ENST00000269137 PRO0461Q9UI25 63 aa9.26□□□□□ -0.93
SS18-201ENST00000269137 PSCAO43653 123 aa9.25□□□□□ -0.93
SS18-201ENST00000269137 RNF151Q2KHN1 245 aa9.25□□□□□ -0.93
SS18-201ENST00000269137 ALMS1Q8TCU4 4167 aa9.25□□□□□ -0.93
SS18-201ENST00000269137 WFDC2Q14508 124 aa9.24□□□□□ -0.93
SS18-201ENST00000269137 SND1-IT1Q9HBX3 110 aa9.24□□□□□ -0.93
SS18-201ENST00000269137 KMT2AQ03164 3969 aa9.24□□□□□ -0.93
SS18-201ENST00000269137 PSMB2P49721 201 aa9.24□□□□□ -0.93
SS18-201ENST00000269137 Q6ZR54 194 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms