RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SEC11AP67812 179 aa11.82□□□□□ -0.52
CLN3-259ENST00000637551 FA2HQ7L5A8 372 aa11.82□□□□□ -0.52
CLN3-259ENST00000637551 SLC7A5P1Q8MH63 180 aa11.82□□□□□ -0.52
CLN3-259ENST00000637551 OR10D4PQ8NGN7 298 aa11.82□□□□□ -0.52
CLN3-259ENST00000637551 IGHV3-64A0A075B6Q5 118 aa11.81□□□□□ -0.52
CLN3-259ENST00000637551 MALP21145 153 aa11.81□□□□□ -0.52
CLN3-259ENST00000637551 RNASE13Q5GAN3 156 aaKnown RBP11.81□□□□□ -0.52
CLN3-259ENST00000637551 C18orf32Q8TCD1 76 aa11.81□□□□□ -0.52
CLN3-259ENST00000637551 VCX2Q9H322 139 aa11.81□□□□□ -0.52
CLN3-259ENST00000637551 C2orf48Q96LS8 159 aa11.8□□□□□ -0.52
CLN3-259ENST00000637551 CHAC1Q9BUX1 264 aa11.8□□□□□ -0.52
CLN3-259ENST00000637551 ZNF561-AS1K7EIQ3 104 aa11.79□□□□□ -0.52
CLN3-259ENST00000637551 UBE2D1P51668 147 aa11.79□□□□□ -0.52
CLN3-259ENST00000637551 CIRBPQ14011 172 aaKnown RBP11.79□□□□□ -0.52
CLN3-259ENST00000637551 SDIM1Q6ZPB5 146 aa11.79□□□□□ -0.52
CLN3-259ENST00000637551 LINC00173Q6ZV60 143 aa11.79□□□□□ -0.52
CLN3-259ENST00000637551 OPRPNQ99935 248 aaPredicted RBP11.79□□□□□ -0.52
CLN3-259ENST00000637551 A0A087WZ39 114 aa11.78□□□□□ -0.52
CLN3-259ENST00000637551 SLPIP03973 132 aa11.78□□□□□ -0.52
CLN3-259ENST00000637551 LINC00242Q5T6M2 205 aa11.78□□□□□ -0.52
CLN3-259ENST00000637551 FAM30AQ9NZY2 134 aa11.78□□□□□ -0.52
CLN3-259ENST00000637551 LINC00614P0C842 121 aa11.77□□□□□ -0.53
CLN3-259ENST00000637551 CBLN2Q8IUK8 224 aa11.77□□□□□ -0.53
CLN3-259ENST00000637551 SCGB3A1Q96QR1 104 aa11.77□□□□□ -0.53
CLN3-259ENST00000637551 HERVK_113P63121 156 aa11.76□□□□□ -0.53
CLN3-259ENST00000637551 HIGD2BQ4VC39 106 aa11.76□□□□□ -0.53
CLN3-259ENST00000637551 UBR4Q5T4S7 5183 aa11.76□□□□□ -0.53
CLN3-259ENST00000637551 LINC00474Q9P2X8 69 aa11.75□□□□□ -0.53
CLN3-259ENST00000637551 DNAH8Q96JB1 4490 aa11.75□□□□□ -0.53
CLN3-259ENST00000637551 SYCNQ0VAF6 134 aa11.74□□□□□ -0.53
CLN3-259ENST00000637551 RNF151Q2KHN1 245 aa11.74□□□□□ -0.53
CLN3-259ENST00000637551 LINC01620Q4KN68 170 aa11.74□□□□□ -0.53
CLN3-259ENST00000637551 CHCHD1Q96BP2 118 aaKnown RBP11.74□□□□□ -0.53
CLN3-259ENST00000637551 CARD19Q96LW7 228 aa11.74□□□□□ -0.53
CLN3-259ENST00000637551 IGLV4-69A0A075B6H9 119 aa11.73□□□□□ -0.53
CLN3-259ENST00000637551 HBDP02042 147 aa11.73□□□□□ -0.53
CLN3-259ENST00000637551 SCXQ7RTU7 201 aa11.73□□□□□ -0.53
CLN3-259ENST00000637551 C5orf38Q86SI9 138 aa11.73□□□□□ -0.53
CLN3-259ENST00000637551 EPM2AB3EWF7 344 aa11.72□□□□□ -0.53
CLN3-259ENST00000637551 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.72□□□□□ -0.53
CLN3-259ENST00000637551 FAM229AH3BQW9 127 aa11.71□□□□□ -0.53
CLN3-259ENST00000637551 SPAG11BQ08648 103 aa11.71□□□□□ -0.53
CLN3-259ENST00000637551 URB1-AS1Q96HZ7 61 aa11.71□□□□□ -0.53
CLN3-259ENST00000637551 A0A096LNJ9 63 aa11.7□□□□□ -0.54
CLN3-259ENST00000637551 TINCRA0A1B0GVN0 87 aa11.7□□□□□ -0.54
CLN3-259ENST00000637551 ATP5LO75964 103 aa11.7□□□□□ -0.54
CLN3-259ENST00000637551 PMVKQ15126 192 aa11.7□□□□□ -0.54
CLN3-259ENST00000637551 CIRBP-AS1Q8TBR5 109 aa11.7□□□□□ -0.54
CLN3-259ENST00000637551 ORAOV1Q8WV07 137 aa11.7□□□□□ -0.54
CLN3-259ENST00000637551 MRPL35Q9NZE8 188 aaKnown RBP11.7□□□□□ -0.54
CLN3-259ENST00000637551 IGLV5-45A0A087WSX0 123 aa11.69□□□□□ -0.54
CLN3-259ENST00000637551 SPACA4Q8TDM5 124 aa11.69□□□□□ -0.54
CLN3-259ENST00000637551 CAMK2N2Q96S95 79 aa11.69□□□□□ -0.54
CLN3-259ENST00000637551 GEMIN7Q9H840 131 aaKnown RBP11.69□□□□□ -0.54
CLN3-259ENST00000637551 MYCBP2O75592 4640 aa11.69□□□□□ -0.54
CLN3-259ENST00000637551 COLCA2A8K830 154 aa11.68□□□□□ -0.54
CLN3-259ENST00000637551 NDUFA1O15239 70 aa11.68□□□□□ -0.54
CLN3-259ENST00000637551 PDZD11Q5EBL8 140 aa11.68□□□□□ -0.54
CLN3-259ENST00000637551 CST9LQ9H4G1 147 aa11.68□□□□□ -0.54
CLN3-259ENST00000637551 COX6A2Q02221 97 aa11.67□□□□□ -0.54
CLN3-259ENST00000637551 Q5VSD8 79 aa11.67□□□□□ -0.54
CLN3-259ENST00000637551 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.67□□□□□ -0.54
CLN3-259ENST00000637551 LOC107984640A0A0U1RRK4 108 aa11.66□□□□□ -0.54
CLN3-259ENST00000637551 TRGC2P03986 189 aa11.66□□□□□ -0.54
CLN3-259ENST00000637551 PLA2G1BP04054 148 aaKnown RBP11.66□□□□□ -0.54
CLN3-259ENST00000637551 INAFM2P0DMQ5 153 aa11.66□□□□□ -0.54
CLN3-259ENST00000637551 Q8IZM0 81 aa11.66□□□□□ -0.54
CLN3-259ENST00000637551 TRBV30A0A0K0K1B3 111 aa11.65□□□□□ -0.54
CLN3-259ENST00000637551 TLX1NBP0CAT3 122 aa11.65□□□□□ -0.54
CLN3-259ENST00000637551 KIAA0087Q14695 138 aa11.65□□□□□ -0.54
CLN3-259ENST00000637551 Q6ZRU5 148 aa11.65□□□□□ -0.54
CLN3-259ENST00000637551 PLAC8Q9NZF1 115 aa11.65□□□□□ -0.54
CLN3-259ENST00000637551 SRRM2Q9UQ35 2752 aaKnown RBP11.65□□□□□ -0.54
CLN3-259ENST00000637551 CXCL5P42830 114 aa11.64□□□□□ -0.55
CLN3-259ENST00000637551 PACRGQ96M98 296 aaPredicted RBP11.64□□□□□ -0.55
CLN3-259ENST00000637551 FAT1Q14517 4588 aa11.64□□□□□ -0.55
CLN3-259ENST00000637551 ZC2HC1BQ5TFG8 222 aa11.63□□□□□ -0.55
CLN3-259ENST00000637551 LINC00528Q8N1L1 170 aa11.63□□□□□ -0.55
CLN3-259ENST00000637551 LINC00526Q96FQ7 95 aa11.63□□□□□ -0.55
CLN3-259ENST00000637551 CDKN2A-AS1Q9UH64 79 aa11.63□□□□□ -0.55
CLN3-259ENST00000637551 IGLC3P0DOY3 106 aa11.62□□□□□ -0.55
CLN3-259ENST00000637551 BAGE3Q86Y29 109 aa11.62□□□□□ -0.55
CLN3-259ENST00000637551 A0A0J9YXV3 536 aa11.61□□□□□ -0.55
CLN3-259ENST00000637551 H3BRM9 83 aa11.61□□□□□ -0.55
CLN3-259ENST00000637551 PANO1I0J062 215 aa11.61□□□□□ -0.55
CLN3-259ENST00000637551 HSBP1O75506 76 aa11.61□□□□□ -0.55
CLN3-259ENST00000637551 PRSS2P07478 247 aa11.61□□□□□ -0.55
CLN3-259ENST00000637551 PTTG1IPP53801 180 aa11.61□□□□□ -0.55
CLN3-259ENST00000637551 LINC00469Q8N7U9 141 aa11.61□□□□□ -0.55
CLN3-259ENST00000637551 A0A087WYN8 130 aa11.6□□□□□ -0.55
CLN3-259ENST00000637551 A0A096LNI7 61 aa11.6□□□□□ -0.55
CLN3-259ENST00000637551 TRAV12-1A0A0B4J245 112 aa11.6□□□□□ -0.55
CLN3-259ENST00000637551 SMR3BP02814 79 aaPredicted RBP11.6□□□□□ -0.55
CLN3-259ENST00000637551 HAMPP81172 84 aa11.6□□□□□ -0.55
CLN3-259ENST00000637551 FLG2Q5D862 2391 aaPredicted RBP11.59□□□□□ -0.55
CLN3-259ENST00000637551 SMIM1B2RUZ4 78 aa11.59□□□□□ -0.55
CLN3-259ENST00000637551 ODF1Q14990 250 aa11.59□□□□□ -0.55
CLN3-259ENST00000637551 VPS13BQ7Z7G8 4022 aa11.59□□□□□ -0.55
CLN3-259ENST00000637551 CHTF8P0CG12 524 aa11.57□□□□□ -0.56
CLN3-259ENST00000637551 CKS1BP61024 79 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms